Wall clock time and date at job start Tue Mar 31 2020 05:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47145 * 2 1 4 4 H 1.09005 * 109.54037 * 55.09369 * 3 2 1 5 5 C 1.53125 * 109.50492 * 295.00157 * 3 2 1 6 6 C 1.53114 * 109.16368 * 182.40503 * 5 3 2 7 7 C 1.53037 * 109.31211 * 57.63311 * 6 5 3 8 8 N 1.46854 * 109.52285 * 300.88400 * 7 6 5 9 9 C 1.46895 * 110.99648 * 185.80147 * 8 7 6 10 10 C 1.52996 * 109.47373 * 65.74825 * 9 8 7 11 11 C 1.50702 * 109.47388 * 180.02562 * 10 9 8 12 12 O 1.21275 * 120.00079 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99782 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00699 * 0.02562 * 13 11 10 15 15 C 1.46510 * 119.99799 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.46662 * 90.00099 * 15 13 11 17 17 H 1.07993 * 120.00298 * 0.02562 * 16 15 13 18 18 C 1.37882 * 119.99790 * 179.97438 * 16 15 13 19 19 N 1.31518 * 119.99779 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 119.99978 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47188 * 60.00282 * 20 18 16 22 22 H 1.48504 * 109.47119 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47322 * 300.00137 * 20 18 16 24 24 C 1.46840 * 111.23238 * 61.67711 * 8 7 6 25 25 H 1.08998 * 109.47080 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47529 * 299.99945 * 1 2 3 27 27 H 1.09003 * 109.47300 * 60.00446 * 1 2 3 28 28 H 1.09002 * 109.47056 * 239.99811 * 2 1 3 29 29 H 1.09003 * 109.46845 * 119.99829 * 2 1 3 30 30 H 1.08998 * 109.52257 * 62.49696 * 5 3 2 31 31 H 1.09004 * 109.56800 * 302.34406 * 5 3 2 32 32 H 1.09002 * 109.50377 * 177.59436 * 6 5 3 33 33 H 1.09003 * 109.50316 * 297.67431 * 6 5 3 34 34 H 1.09000 * 109.46159 * 60.85546 * 7 6 5 35 35 H 1.09000 * 109.46461 * 180.82902 * 7 6 5 36 36 H 1.09006 * 109.47095 * 185.74417 * 9 8 7 37 37 H 1.08994 * 109.47117 * 305.74495 * 9 8 7 38 38 H 1.09008 * 109.47411 * 299.99935 * 10 9 8 39 39 H 1.09003 * 109.47446 * 59.99598 * 10 9 8 40 40 H 1.09003 * 109.46954 * 89.99786 * 14 13 11 41 41 H 1.08993 * 109.47223 * 209.99921 * 14 13 11 42 42 H 1.09003 * 109.46642 * 330.00381 * 14 13 11 43 43 H 1.08996 * 109.46844 * 210.00141 * 15 13 11 44 44 H 1.08999 * 109.46924 * 330.00408 * 15 13 11 45 45 H 0.97001 * 119.99797 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.46294 * 178.26219 * 24 8 7 47 47 H 1.09005 * 109.46534 * 58.30014 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6073 1.9821 0.8424 5 6 1.6353 2.1278 -1.3081 6 6 2.2006 3.5507 -1.3259 7 6 3.7215 3.4930 -1.1662 8 7 4.0572 2.8286 0.0996 9 6 5.5035 2.8773 0.3522 10 6 5.9346 4.3290 0.5702 11 6 7.4184 4.3790 0.8287 12 8 8.0672 3.3544 0.8382 13 7 8.0244 5.5625 1.0493 14 6 7.2407 6.8002 1.0385 15 6 9.4669 5.6110 1.3012 16 6 10.2001 5.7654 -0.0064 17 1 9.6471 5.8220 -0.9322 18 6 11.5771 5.8353 -0.0205 19 7 12.2506 5.7668 1.1071 20 14 12.4860 6.0258 -1.6412 21 1 12.0562 7.2827 -2.3049 22 1 13.9480 6.0765 -1.3858 23 1 12.1764 4.8704 -2.5212 24 6 3.5655 1.4451 0.1208 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5482 2.1668 -1.3777 31 1 2.0344 1.5666 -2.1530 32 1 1.9520 4.0292 -2.2732 33 1 1.7699 4.1236 -0.5047 34 1 4.1527 2.9323 -1.9955 35 1 4.1251 4.5056 -1.1638 36 1 5.7370 2.2916 1.2414 37 1 6.0360 2.4649 -0.5047 38 1 5.7011 4.9148 -0.3190 39 1 5.4020 4.7415 1.4271 40 1 6.8745 7.0071 2.0440 41 1 7.8693 7.6253 0.7038 42 1 6.3952 6.6888 0.3596 43 1 9.6944 6.4586 1.9477 44 1 9.7820 4.6880 1.7878 45 1 13.2193 5.8156 1.0971 46 1 3.8565 0.9706 1.0579 47 1 3.9969 0.8935 -0.7146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036169548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:56 Heat of formation + Delta-G solvation = -77.073006 kcal Electronic energy + Delta-G solvation = -22645.921096 eV Core-core repulsion = 19440.744845 eV Total energy + Delta-G solvation = -3205.176251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87194 -40.02517 -36.72537 -36.27911 -34.74972 -33.57928 -31.86328 -30.15767 -29.38404 -27.33017 -26.28897 -25.02375 -24.05766 -23.24357 -21.48853 -20.59498 -19.87629 -18.71391 -18.03473 -17.13061 -16.79617 -16.53560 -16.24933 -15.87267 -15.58947 -15.27589 -15.09966 -14.63013 -14.44052 -14.11262 -14.02183 -13.80072 -13.63505 -13.45091 -13.24988 -13.22755 -12.91362 -12.78493 -12.67282 -12.49805 -12.24122 -12.20100 -12.11816 -11.94163 -11.76490 -11.72789 -11.43752 -11.05420 -11.00751 -10.65695 -10.60880 -9.42724 -9.34014 -8.23667 -6.38938 1.35040 1.39532 1.46950 1.83432 2.27104 2.41168 2.94342 3.05542 3.77454 3.78362 3.91080 3.93827 4.06359 4.12095 4.23258 4.37626 4.41055 4.43554 4.49959 4.59781 4.67986 4.72366 4.72877 4.76956 4.79659 4.90885 4.96490 4.97923 4.98605 5.02158 5.06133 5.10938 5.16351 5.22055 5.25337 5.27709 5.35940 5.52281 5.54786 5.59911 5.83417 6.04327 6.05030 6.15297 6.68053 6.78618 7.26661 7.47773 8.83289 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.002947 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.472951 B = 9499.863937 C = 9529.833291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.077 4.077 4 H 0.077 0.923 5 C -0.115 4.115 6 C -0.111 4.111 7 C 0.044 3.956 8 N -0.535 5.535 9 C 0.080 3.920 10 C -0.114 4.114 11 C 0.494 3.506 12 O -0.603 6.603 13 N -0.612 5.612 14 C 0.079 3.921 15 C 0.258 3.742 16 C -0.544 4.544 17 H 0.053 0.947 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.969 3.031 21 H -0.259 1.259 22 H -0.277 1.277 23 H -0.278 1.278 24 C 0.057 3.943 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.021 0.979 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.017 0.983 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.024 0.976 44 H -0.004 1.004 45 H 0.268 0.732 46 H 0.069 0.931 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.053 -3.940 -4.021 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.096 4.096 4 H 0.096 0.904 5 C -0.152 4.152 6 C -0.149 4.149 7 C -0.084 4.084 8 N -0.259 5.259 9 C -0.048 4.048 10 C -0.154 4.154 11 C 0.283 3.717 12 O -0.485 6.485 13 N -0.343 5.343 14 C -0.063 4.063 15 C 0.136 3.864 16 C -0.582 4.582 17 H 0.071 0.929 18 C -0.193 4.193 19 N -0.569 5.569 20 Si 0.793 3.207 21 H -0.183 1.183 22 H -0.202 1.202 23 H -0.204 1.204 24 C -0.070 4.070 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.040 0.960 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.035 0.965 38 H 0.128 0.872 39 H 0.139 0.861 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.042 0.958 44 H 0.014 0.986 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -25.773 -4.164 -3.552 26.348 hybrid contribution 1.775 -0.520 -1.093 2.148 sum -23.998 -4.684 -4.645 24.888 Atomic orbital electron populations 1.21772 0.94709 1.01914 1.02219 1.21522 0.96835 0.95421 1.01861 1.21167 0.92895 0.96572 0.98928 0.90446 1.21684 1.01375 0.95564 0.96625 1.21569 0.93143 0.97457 1.02709 1.22298 0.97715 0.99392 0.88954 1.61940 1.12294 1.17258 1.34401 1.21599 0.87329 0.95670 1.00223 1.21554 0.89296 0.98893 1.05609 1.21385 0.91307 0.82782 0.76234 1.90628 1.68592 1.35345 1.53899 1.48214 1.09572 1.07590 1.68908 1.21941 0.96053 0.85486 1.02849 1.18756 0.76454 0.95522 0.95647 1.21671 0.92232 1.50652 0.93671 0.92906 1.25897 0.98365 0.94552 1.00511 1.70051 1.07949 1.50780 1.28072 0.85451 0.77326 0.79033 0.78902 1.18314 1.20236 1.20398 1.22195 0.96334 0.88073 1.00443 0.92428 0.92530 0.92082 0.92355 0.92081 0.90171 0.92816 0.90213 0.90787 0.96026 0.89920 0.91543 0.96482 0.87232 0.86130 0.91063 0.91607 0.88689 0.95807 0.98598 0.92356 0.91207 0.95887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.67 71.98 0.70 -0.94 16 2 C -0.12 -1.62 5.41 30.59 0.17 -1.46 16 3 C -0.08 -1.22 2.35 -10.74 -0.03 -1.25 16 4 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 5 C -0.12 -1.63 4.98 30.67 0.15 -1.48 16 6 C -0.11 -1.65 6.09 30.64 0.19 -1.47 16 7 C 0.04 0.88 5.29 86.32 0.46 1.33 16 8 N -0.53 -12.35 4.66 -896.38 -4.17 -16.52 16 9 C 0.08 2.37 4.25 86.30 0.37 2.73 16 10 C -0.11 -3.27 4.18 29.85 0.12 -3.14 16 11 C 0.49 21.08 7.67 87.66 0.67 21.75 16 12 O -0.60 -32.28 15.56 -3.01 -0.05 -32.33 16 13 N -0.61 -26.59 2.86 -851.11 -2.43 -29.03 16 14 C 0.08 2.36 10.24 127.77 1.31 3.66 16 15 C 0.26 14.31 5.16 85.63 0.44 14.75 16 16 C -0.54 -32.02 9.39 25.60 0.24 -31.78 16 17 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 18 C 0.01 0.33 5.46 84.66 0.46 0.79 16 19 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 20 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 24 C 0.06 1.21 4.74 86.33 0.41 1.62 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.61 6.62 -2.39 -0.02 0.60 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.91 6.70 -2.39 -0.02 0.90 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.08 1.54 6.21 -2.39 -0.01 1.53 16 36 H 0.07 2.14 7.95 -2.38 -0.02 2.12 16 37 H 0.02 0.58 8.08 -2.39 -0.02 0.56 16 38 H 0.11 2.66 5.69 -2.38 -0.01 2.64 16 39 H 0.12 2.87 8.11 -2.39 -0.02 2.86 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 42 H 0.09 2.13 6.44 -2.39 -0.02 2.11 16 43 H 0.02 1.33 8.07 -2.39 -0.02 1.32 16 44 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.07 1.52 8.02 -2.39 -0.02 1.50 16 47 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 Total: -1.00 -73.98 365.16 2.22 -71.75 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.91 Total: 10.36 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 5.66 Total: 5.13 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -6.32 Total: -102.44 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.05 Total: -32.33 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -73.98 2.22 -71.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036169548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.321 kcal (2) G-P(sol) polarization free energy of solvation -73.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds