Wall clock time and date at job start Tue Mar 31 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47269 * 2 1 4 4 H 1.09000 * 109.50803 * 305.07769 * 3 2 1 5 5 C 1.53129 * 109.53719 * 65.13410 * 3 2 1 6 6 C 1.53123 * 109.15931 * 177.57614 * 5 3 2 7 7 C 1.53039 * 109.31189 * 302.40768 * 6 5 3 8 8 N 1.46842 * 109.52266 * 59.15550 * 7 6 5 9 9 C 1.46910 * 110.99703 * 174.16402 * 8 7 6 10 10 C 1.53001 * 109.46982 * 293.95645 * 9 8 7 11 11 C 1.50696 * 109.46994 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00246 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99804 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99952 * 0.02562 * 13 11 10 15 15 C 1.46497 * 119.99684 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.46821 * 90.00533 * 15 13 11 17 17 H 1.07992 * 120.00031 * 359.97438 * 16 15 13 18 18 C 1.37884 * 119.99846 * 180.02562 * 16 15 13 19 19 N 1.31517 * 120.00024 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47308 * 90.00109 * 20 18 16 22 22 H 1.48496 * 109.47022 * 210.00489 * 20 18 16 23 23 H 1.48497 * 109.47268 * 330.00120 * 20 18 16 24 24 C 1.46849 * 111.20050 * 298.25785 * 8 7 6 25 25 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47714 * 300.00479 * 1 2 3 27 27 H 1.09004 * 109.46892 * 60.00403 * 1 2 3 28 28 H 1.08996 * 109.47450 * 239.99999 * 2 1 3 29 29 H 1.09004 * 109.46892 * 119.99597 * 2 1 3 30 30 H 1.09000 * 109.49266 * 57.69305 * 5 3 2 31 31 H 1.08995 * 109.55725 * 297.50051 * 5 3 2 32 32 H 1.09002 * 109.50371 * 182.44317 * 6 5 3 33 33 H 1.09003 * 109.50070 * 62.36477 * 6 5 3 34 34 H 1.08995 * 109.46501 * 179.17754 * 7 6 5 35 35 H 1.09002 * 109.45552 * 299.15457 * 7 6 5 36 36 H 1.08999 * 109.47041 * 53.95578 * 9 8 7 37 37 H 1.08994 * 109.46712 * 173.95817 * 9 8 7 38 38 H 1.09001 * 109.46721 * 300.00112 * 10 9 8 39 39 H 1.09004 * 109.47095 * 59.99745 * 10 9 8 40 40 H 1.08995 * 109.47453 * 90.00034 * 14 13 11 41 41 H 1.09004 * 109.47142 * 209.99873 * 14 13 11 42 42 H 1.09000 * 109.47202 * 329.99858 * 14 13 11 43 43 H 1.09003 * 109.47437 * 210.00137 * 15 13 11 44 44 H 1.09003 * 109.47711 * 330.00346 * 15 13 11 45 45 H 0.96997 * 119.99959 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.46071 * 181.75754 * 24 8 7 47 47 H 1.09002 * 109.46350 * 301.73871 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6047 1.9824 -0.8408 5 6 1.6386 2.1275 1.3093 6 6 2.2048 3.5501 1.3263 7 6 3.7252 3.4917 1.1621 8 7 4.0568 2.8287 -0.1055 9 6 5.5024 2.8775 -0.3626 10 6 5.9316 4.3288 -0.5876 11 6 7.4144 4.3788 -0.8520 12 8 8.0640 3.3547 -0.8594 13 7 8.0186 5.5617 -1.0804 14 6 7.2340 6.7989 -1.0710 15 6 9.4601 5.6104 -1.3369 16 6 9.7115 5.4824 -2.8174 17 1 8.8806 5.3751 -3.4988 18 6 11.0023 5.5013 -3.3016 19 7 11.2217 5.3891 -4.5935 20 14 12.4395 5.6861 -2.1228 21 1 12.8905 4.3431 -1.6776 22 1 13.5574 6.3810 -2.8102 23 1 12.0132 6.4812 -0.9433 24 6 3.5652 1.4451 -0.1256 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0408 1.5654 2.1521 31 1 0.5518 2.1671 1.3821 32 1 1.9592 4.0283 2.2746 33 1 1.7721 4.1238 0.5066 34 1 4.1294 4.5040 1.1592 35 1 4.1584 2.9301 1.9898 36 1 6.0379 2.4689 0.4943 37 1 5.7336 2.2885 -1.2501 38 1 5.3961 4.7373 -1.4446 39 1 5.7003 4.9178 0.2999 40 1 7.2159 7.2100 -0.0618 41 1 7.6871 7.5216 -1.7497 42 1 6.2153 6.5855 -1.3948 43 1 9.8607 6.5597 -0.9812 44 1 9.9504 4.7899 -0.8129 45 1 12.1298 5.4027 -4.9342 46 1 3.8531 0.9710 -1.0639 47 1 3.9991 0.8933 0.7083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036169549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:00 Heat of formation + Delta-G solvation = -51.654295 kcal Electronic energy + Delta-G solvation = -22654.632326 eV Core-core repulsion = 19450.558312 eV Total energy + Delta-G solvation = -3204.074013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.66252 -38.83165 -35.59720 -34.85029 -32.84360 -32.49087 -30.78842 -29.28666 -28.18595 -25.96102 -25.15970 -23.72938 -22.84677 -21.86245 -20.51904 -19.85168 -18.33097 -16.94593 -16.70685 -15.61868 -15.50834 -15.41198 -15.06769 -14.67645 -14.40622 -14.33940 -13.95931 -13.59394 -13.37189 -13.12304 -12.74951 -12.54744 -12.27885 -12.25363 -12.10278 -11.98031 -11.79160 -11.55037 -11.35772 -11.33492 -11.11404 -10.99642 -10.86762 -10.69142 -10.51464 -10.31251 -10.27456 -10.12941 -9.52577 -8.97576 -8.57419 -8.34841 -7.67559 -6.07124 -4.05669 3.30089 3.35976 3.37760 3.38471 3.62306 4.08613 4.40936 4.50216 4.59988 4.65920 4.87109 5.00177 5.03600 5.16786 5.17058 5.25504 5.26863 5.32377 5.41279 5.42451 5.43997 5.55401 5.60098 5.65913 5.68792 5.73411 5.76264 5.82551 5.86879 5.88918 5.90417 5.99558 6.10519 6.14749 6.15647 6.21292 6.28352 6.71754 6.95690 7.05410 7.07560 7.36456 7.62932 8.27854 8.49102 8.95044 9.01829 9.53251 11.06367 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033702 B = 0.002992 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.622063 B = 9356.813103 C = 9714.892305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.079 0.921 5 C -0.116 4.116 6 C -0.117 4.117 7 C 0.050 3.950 8 N -0.540 5.540 9 C 0.073 3.927 10 C -0.133 4.133 11 C 0.507 3.493 12 O -0.545 6.545 13 N -0.599 5.599 14 C 0.084 3.916 15 C 0.215 3.785 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.877 3.123 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.266 1.266 24 C 0.061 3.939 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.264 0.736 46 H 0.075 0.925 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.186 -4.022 12.899 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.103 4.103 4 H 0.097 0.903 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.078 4.078 8 N -0.264 5.264 9 C -0.055 4.055 10 C -0.174 4.174 11 C 0.293 3.707 12 O -0.423 6.423 13 N -0.331 5.331 14 C -0.060 4.060 15 C 0.094 3.906 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.067 4.067 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -20.900 -4.293 12.380 24.668 hybrid contribution 1.278 -0.199 1.019 1.647 sum -19.622 -4.492 13.399 24.181 Atomic orbital electron populations 1.21793 0.95809 1.01396 1.01898 1.21537 0.95942 0.96286 1.02024 1.21222 0.94848 0.95719 0.98541 0.90268 1.21676 1.00443 0.95946 0.97291 1.21586 0.95050 0.97057 1.01750 1.22159 0.96048 0.99519 0.90055 1.61883 1.14722 1.16551 1.33254 1.21788 0.85683 0.96150 1.01867 1.21635 0.93858 0.98294 1.03601 1.20357 0.89230 0.83672 0.77398 1.90661 1.66600 1.33144 1.51878 1.47843 1.10527 1.05703 1.69039 1.21662 0.95859 0.87754 1.00766 1.19656 0.76189 0.97096 0.97658 1.21340 0.94091 1.50562 0.90618 0.90769 1.24872 0.98645 0.94532 0.95055 1.69901 1.21133 1.50355 1.12279 0.86836 0.82490 0.78906 0.81362 1.19930 1.21071 1.19100 1.22107 0.94697 0.88784 1.01078 0.92977 0.92612 0.92690 0.91820 0.92189 0.92470 0.91758 0.91768 0.91070 0.90495 0.95101 0.94130 0.89800 0.88494 0.89776 0.93776 0.90634 0.91938 0.95297 0.94630 0.92580 0.90626 0.95017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 37.16 0.36 -0.65 16 2 C -0.12 -0.91 5.41 -26.73 -0.14 -1.06 16 3 C -0.08 -0.74 2.35 -90.54 -0.21 -0.95 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 5 C -0.12 -0.93 4.98 -26.60 -0.13 -1.07 16 6 C -0.12 -0.99 6.09 -26.65 -0.16 -1.15 16 7 C 0.05 0.52 5.29 -3.84 -0.02 0.50 16 8 N -0.54 -6.46 4.66 -234.67 -1.09 -7.56 16 9 C 0.07 1.06 4.25 -3.82 -0.02 1.04 16 10 C -0.13 -1.98 4.19 -27.88 -0.12 -2.09 16 11 C 0.51 10.42 7.67 -10.99 -0.08 10.34 16 12 O -0.54 -13.55 15.56 5.56 0.09 -13.46 16 13 N -0.60 -12.54 2.86 -182.96 -0.52 -13.07 16 14 C 0.08 1.29 10.24 59.85 0.61 1.91 16 15 C 0.21 5.36 4.23 -5.19 -0.02 5.33 16 16 C -0.53 -15.42 9.94 -34.44 -0.34 -15.76 16 17 H 0.07 2.38 8.06 -52.49 -0.42 1.95 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 20 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 21 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 24 C 0.06 0.66 4.74 -3.83 -0.02 0.64 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.35 6.63 -51.93 -0.34 0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 6.70 -51.93 -0.35 0.11 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.77 6.22 -51.93 -0.32 0.44 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 37 H 0.08 1.35 7.94 -51.93 -0.41 0.94 16 38 H 0.10 1.36 7.40 -51.93 -0.38 0.98 16 39 H 0.08 1.05 6.40 -51.93 -0.33 0.71 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 42 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 43 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 44 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 47 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -33.63 361.59 -9.07 -42.70 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -8.70 Total: -3.02 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.40 Total: -0.96 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.84 Total: -47.89 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.63 -9.07 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036169549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.952 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds