Wall clock time and date at job start Tue Mar 31 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47269 * 2 1 4 4 H 1.09000 * 109.50803 * 305.07769 * 3 2 1 5 5 C 1.53129 * 109.53719 * 65.13410 * 3 2 1 6 6 C 1.53123 * 109.15931 * 177.57614 * 5 3 2 7 7 C 1.53039 * 109.31189 * 302.40768 * 6 5 3 8 8 N 1.46842 * 109.52266 * 59.15550 * 7 6 5 9 9 C 1.46910 * 110.99703 * 174.16402 * 8 7 6 10 10 C 1.53001 * 109.46982 * 293.95645 * 9 8 7 11 11 C 1.50696 * 109.46994 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00246 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99804 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99952 * 0.02562 * 13 11 10 15 15 C 1.46497 * 119.99684 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.46821 * 90.00533 * 15 13 11 17 17 H 1.07992 * 120.00031 * 359.97438 * 16 15 13 18 18 C 1.37884 * 119.99846 * 180.02562 * 16 15 13 19 19 N 1.31517 * 120.00024 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47308 * 90.00109 * 20 18 16 22 22 H 1.48496 * 109.47022 * 210.00489 * 20 18 16 23 23 H 1.48497 * 109.47268 * 330.00120 * 20 18 16 24 24 C 1.46849 * 111.20050 * 298.25785 * 8 7 6 25 25 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47714 * 300.00479 * 1 2 3 27 27 H 1.09004 * 109.46892 * 60.00403 * 1 2 3 28 28 H 1.08996 * 109.47450 * 239.99999 * 2 1 3 29 29 H 1.09004 * 109.46892 * 119.99597 * 2 1 3 30 30 H 1.09000 * 109.49266 * 57.69305 * 5 3 2 31 31 H 1.08995 * 109.55725 * 297.50051 * 5 3 2 32 32 H 1.09002 * 109.50371 * 182.44317 * 6 5 3 33 33 H 1.09003 * 109.50070 * 62.36477 * 6 5 3 34 34 H 1.08995 * 109.46501 * 179.17754 * 7 6 5 35 35 H 1.09002 * 109.45552 * 299.15457 * 7 6 5 36 36 H 1.08999 * 109.47041 * 53.95578 * 9 8 7 37 37 H 1.08994 * 109.46712 * 173.95817 * 9 8 7 38 38 H 1.09001 * 109.46721 * 300.00112 * 10 9 8 39 39 H 1.09004 * 109.47095 * 59.99745 * 10 9 8 40 40 H 1.08995 * 109.47453 * 90.00034 * 14 13 11 41 41 H 1.09004 * 109.47142 * 209.99873 * 14 13 11 42 42 H 1.09000 * 109.47202 * 329.99858 * 14 13 11 43 43 H 1.09003 * 109.47437 * 210.00137 * 15 13 11 44 44 H 1.09003 * 109.47711 * 330.00346 * 15 13 11 45 45 H 0.96997 * 119.99959 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.46071 * 181.75754 * 24 8 7 47 47 H 1.09002 * 109.46350 * 301.73871 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6047 1.9824 -0.8408 5 6 1.6386 2.1275 1.3093 6 6 2.2048 3.5501 1.3263 7 6 3.7252 3.4917 1.1621 8 7 4.0568 2.8287 -0.1055 9 6 5.5024 2.8775 -0.3626 10 6 5.9316 4.3288 -0.5876 11 6 7.4144 4.3788 -0.8520 12 8 8.0640 3.3547 -0.8594 13 7 8.0186 5.5617 -1.0804 14 6 7.2340 6.7989 -1.0710 15 6 9.4601 5.6104 -1.3369 16 6 9.7115 5.4824 -2.8174 17 1 8.8806 5.3751 -3.4988 18 6 11.0023 5.5013 -3.3016 19 7 11.2217 5.3891 -4.5935 20 14 12.4395 5.6861 -2.1228 21 1 12.8905 4.3431 -1.6776 22 1 13.5574 6.3810 -2.8102 23 1 12.0132 6.4812 -0.9433 24 6 3.5652 1.4451 -0.1256 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0408 1.5654 2.1521 31 1 0.5518 2.1671 1.3821 32 1 1.9592 4.0283 2.2746 33 1 1.7721 4.1238 0.5066 34 1 4.1294 4.5040 1.1592 35 1 4.1584 2.9301 1.9898 36 1 6.0379 2.4689 0.4943 37 1 5.7336 2.2885 -1.2501 38 1 5.3961 4.7373 -1.4446 39 1 5.7003 4.9178 0.2999 40 1 7.2159 7.2100 -0.0618 41 1 7.6871 7.5216 -1.7497 42 1 6.2153 6.5855 -1.3948 43 1 9.8607 6.5597 -0.9812 44 1 9.9504 4.7899 -0.8129 45 1 12.1298 5.4027 -4.9342 46 1 3.8531 0.9710 -1.0639 47 1 3.9991 0.8933 0.7083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036169549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:00 Heat of formation + Delta-G solvation = -74.038190 kcal Electronic energy + Delta-G solvation = -22655.602964 eV Core-core repulsion = 19450.558312 eV Total energy + Delta-G solvation = -3205.044652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.90910 -40.04393 -36.76631 -36.29325 -34.72041 -33.59326 -31.97981 -30.44978 -29.62390 -27.37240 -26.23783 -24.84418 -23.96467 -23.16301 -21.48075 -20.59499 -19.88265 -19.16001 -18.07501 -17.13934 -16.85502 -16.54830 -16.24583 -15.76642 -15.49403 -15.40295 -15.12083 -14.66986 -14.45584 -14.41202 -13.97140 -13.88024 -13.65020 -13.61636 -13.29933 -13.27024 -12.93588 -12.81067 -12.61904 -12.41601 -12.24497 -12.13746 -12.02871 -11.93323 -11.76486 -11.75551 -11.43923 -11.05390 -11.01320 -10.84462 -10.67113 -9.40016 -9.32435 -8.35211 -6.40470 1.31611 1.35941 1.44521 1.78647 2.26826 2.30187 2.92696 2.99230 3.76444 3.77039 3.90213 3.93464 4.05635 4.12131 4.23788 4.37010 4.40221 4.42918 4.48731 4.56670 4.66874 4.67625 4.72046 4.76152 4.78720 4.81262 4.92775 4.94292 4.96467 4.99034 5.02900 5.04779 5.10703 5.16150 5.25170 5.27329 5.36122 5.44879 5.51988 5.59547 5.61525 6.05092 6.16785 6.22873 6.60886 6.69345 7.20123 7.41155 8.81948 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033702 B = 0.002992 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.622063 B = 9356.813103 C = 9714.892305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.078 4.078 4 H 0.073 0.927 5 C -0.114 4.114 6 C -0.112 4.112 7 C 0.045 3.955 8 N -0.539 5.539 9 C 0.080 3.920 10 C -0.115 4.115 11 C 0.496 3.504 12 O -0.599 6.599 13 N -0.608 5.608 14 C 0.077 3.923 15 C 0.222 3.778 16 C -0.537 4.537 17 H 0.027 0.973 18 C 0.009 3.991 19 N -0.946 5.946 20 Si 0.950 3.050 21 H -0.277 1.277 22 H -0.274 1.274 23 H -0.237 1.237 24 C 0.058 3.942 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.057 0.943 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.269 0.731 46 H 0.064 0.936 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.700 -2.650 15.368 27.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.097 4.097 4 H 0.091 0.909 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.082 4.082 8 N -0.264 5.264 9 C -0.048 4.048 10 C -0.154 4.154 11 C 0.285 3.715 12 O -0.481 6.481 13 N -0.339 5.339 14 C -0.065 4.065 15 C 0.099 3.901 16 C -0.575 4.575 17 H 0.045 0.955 18 C -0.189 4.189 19 N -0.586 5.586 20 Si 0.773 3.227 21 H -0.203 1.203 22 H -0.199 1.199 23 H -0.160 1.160 24 C -0.070 4.070 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.035 0.965 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -22.471 -2.879 14.864 27.096 hybrid contribution 1.671 -0.660 0.177 1.805 sum -20.800 -3.538 15.041 25.911 Atomic orbital electron populations 1.21772 0.94726 1.01920 1.02195 1.21521 0.96829 0.95438 1.01855 1.21170 0.92956 0.96568 0.98995 0.90850 1.21677 1.01351 0.95633 0.96488 1.21580 0.93368 0.97356 1.02687 1.22300 0.97602 0.99506 0.88812 1.61921 1.12520 1.17317 1.34594 1.21591 0.87429 0.95615 1.00176 1.21553 0.89287 0.99013 1.05583 1.21377 0.91367 0.82694 0.76068 1.90629 1.68266 1.35018 1.54210 1.47988 1.09502 1.07881 1.68572 1.21989 0.96303 0.85286 1.02950 1.19341 0.79231 0.97199 0.94288 1.21571 0.93032 1.50447 0.92479 0.95464 1.25895 1.02072 0.93968 0.96975 1.70055 1.22194 1.51723 1.14661 0.85681 0.78266 0.79111 0.79676 1.20278 1.19876 1.15999 1.22177 0.96307 0.88139 1.00350 0.92402 0.91926 0.92738 0.92336 0.92099 0.92514 0.90275 0.89939 0.91141 0.89664 0.95521 0.95585 0.92391 0.87099 0.86253 0.90047 0.91655 0.89139 0.93056 0.96467 0.92237 0.91728 0.95482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 71.98 0.70 -1.01 16 2 C -0.12 -1.67 5.41 30.59 0.17 -1.51 16 3 C -0.08 -1.27 2.35 -10.74 -0.03 -1.30 16 4 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.11 -1.56 4.98 30.68 0.15 -1.41 16 6 C -0.11 -1.58 6.09 30.65 0.19 -1.39 16 7 C 0.05 0.83 5.29 86.33 0.46 1.29 16 8 N -0.54 -12.37 4.66 -896.35 -4.17 -16.55 16 9 C 0.08 2.33 4.25 86.30 0.37 2.70 16 10 C -0.11 -3.21 4.19 29.85 0.12 -3.09 16 11 C 0.50 20.36 7.67 87.66 0.67 21.03 16 12 O -0.60 -30.82 15.56 -3.03 -0.05 -30.86 16 13 N -0.61 -24.96 2.86 -851.14 -2.43 -27.39 16 14 C 0.08 2.16 10.24 127.77 1.31 3.47 16 15 C 0.22 11.01 4.23 85.63 0.36 11.37 16 16 C -0.54 -32.24 9.94 25.60 0.25 -31.99 16 17 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 18 C 0.01 0.52 5.47 84.66 0.46 0.99 16 19 N -0.95 -60.77 13.96 21.45 0.30 -60.48 16 20 Si 0.95 45.07 27.47 68.60 1.88 46.95 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 23 H -0.24 -10.04 6.54 99.48 0.65 -9.38 16 24 C 0.06 1.24 4.74 86.32 0.41 1.65 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.63 6.63 -2.39 -0.02 0.62 16 27 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.88 6.70 -2.39 -0.02 0.86 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.40 6.22 -2.39 -0.01 1.39 16 35 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.03 0.82 8.08 -2.39 -0.02 0.80 16 37 H 0.06 1.96 7.94 -2.39 -0.02 1.94 16 38 H 0.11 2.87 7.40 -2.39 -0.02 2.85 16 39 H 0.12 2.54 6.40 -2.38 -0.02 2.52 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 1.99 8.07 -2.38 -0.02 1.97 16 42 H 0.09 2.03 6.44 -2.39 -0.02 2.02 16 43 H 0.05 2.32 7.13 -2.39 -0.02 2.30 16 44 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 45 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 46 H 0.06 1.49 8.01 -2.39 -0.02 1.47 16 47 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -76.80 361.59 1.98 -74.82 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.85 Total: 12.69 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.59 Total: 0.81 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -6.30 Total: -104.41 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.05 Total: -30.86 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -76.80 1.98 -74.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036169549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.784 kcal (2) G-P(sol) polarization free energy of solvation -76.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds