Wall clock time and date at job start Tue Mar 31 2020 05:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46972 * 2 1 4 4 H 1.09003 * 109.50592 * 55.07645 * 3 2 1 5 5 C 1.53122 * 109.50371 * 294.99834 * 3 2 1 6 6 C 1.53117 * 109.16084 * 182.40554 * 5 3 2 7 7 C 1.53031 * 109.27898 * 57.65574 * 6 5 3 8 8 N 1.46850 * 109.52447 * 300.81764 * 7 6 5 9 9 C 1.46904 * 111.00117 * 185.83700 * 8 7 6 10 10 H 1.09001 * 109.46625 * 66.01720 * 9 8 7 11 11 C 1.52997 * 109.46851 * 186.01180 * 9 8 7 12 12 C 1.50694 * 109.47564 * 306.01796 * 9 8 7 13 13 O 1.21290 * 119.99416 * 333.91657 * 12 9 8 14 14 N 1.34770 * 120.00464 * 153.91977 * 12 9 8 15 15 C 1.46507 * 119.99758 * 359.97438 * 14 12 9 16 16 C 1.46501 * 120.00142 * 180.02562 * 14 12 9 17 17 C 1.50697 * 109.47424 * 90.00022 * 16 14 12 18 18 H 1.08005 * 119.99931 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00289 * 180.02562 * 17 16 14 20 20 N 1.31513 * 119.99733 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99997 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47313 * 89.99860 * 21 19 17 23 23 H 1.48497 * 109.46874 * 209.99687 * 21 19 17 24 24 H 1.48504 * 109.47235 * 329.99715 * 21 19 17 25 25 C 1.46848 * 111.19532 * 61.74366 * 8 7 6 26 26 H 1.09001 * 109.47596 * 300.00247 * 1 2 3 27 27 H 1.09002 * 109.47500 * 60.00513 * 1 2 3 28 28 H 1.08998 * 109.47154 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47601 * 239.99735 * 2 1 3 30 30 H 1.09002 * 109.47500 * 119.99487 * 2 1 3 31 31 H 1.09004 * 109.52234 * 302.31165 * 5 3 2 32 32 H 1.08998 * 109.52307 * 62.49682 * 5 3 2 33 33 H 1.09005 * 109.49762 * 177.59531 * 6 5 3 34 34 H 1.08998 * 109.50287 * 297.71146 * 6 5 3 35 35 H 1.09005 * 109.46467 * 60.83549 * 7 6 5 36 36 H 1.09000 * 109.46405 * 180.81550 * 7 6 5 37 37 H 1.08994 * 109.47267 * 300.00378 * 11 9 8 38 38 H 1.09001 * 109.47066 * 60.00809 * 11 9 8 39 39 H 1.09002 * 109.46630 * 180.02562 * 11 9 8 40 40 H 1.08993 * 109.46833 * 90.00218 * 15 14 12 41 41 H 1.09000 * 109.46611 * 210.00121 * 15 14 12 42 42 H 1.08995 * 109.46965 * 330.00117 * 15 14 12 43 43 H 1.09007 * 109.46997 * 209.99898 * 16 14 12 44 44 H 1.08995 * 109.47394 * 329.99489 * 16 14 12 45 45 H 0.96995 * 119.99693 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.45893 * 178.24313 * 25 8 7 47 47 H 1.09004 * 109.46565 * 58.27365 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6066 1.9817 0.8424 5 6 1.6352 2.1278 -1.3081 6 6 2.2005 3.5507 -1.3259 7 6 3.7214 3.4922 -1.1667 8 7 4.0571 2.8287 0.0997 9 6 5.5035 2.8774 0.3522 10 1 5.8098 3.9113 0.5114 11 6 5.8318 2.0507 1.5971 12 6 6.2401 2.3123 -0.8348 13 8 5.6954 1.5055 -1.5584 14 7 7.5039 2.7032 -1.0922 15 6 8.1615 3.6780 -0.2183 16 6 8.2197 2.1542 -2.2465 17 6 7.9728 3.0250 -3.4514 18 1 7.3451 3.8997 -3.3660 19 6 8.5475 2.7045 -4.6631 20 7 9.3114 1.6391 -4.7672 21 14 8.2408 3.7836 -6.1567 22 1 9.2807 4.8415 -6.2250 23 1 8.2975 2.9537 -7.3868 24 1 6.9005 4.4133 -6.0457 25 6 3.5655 1.4451 0.1208 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0353 1.5663 -2.1524 32 1 0.5482 2.1668 -1.3778 33 1 1.9519 4.0292 -2.2732 34 1 1.7703 4.1234 -0.5043 35 1 4.1521 2.9310 -1.9960 36 1 4.1256 4.5045 -1.1643 37 1 5.2991 2.4595 2.4556 38 1 5.5254 1.0169 1.4379 39 1 6.9049 2.0872 1.7847 40 1 8.6806 3.1543 0.5843 41 1 8.8795 4.2587 -0.7974 42 1 7.4134 4.3462 0.2082 43 1 9.2880 2.1257 -2.0316 44 1 7.8628 1.1444 -2.4487 45 1 9.7160 1.4139 -5.6195 46 1 3.8564 0.9707 1.0580 47 1 3.9969 0.8936 -0.7146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042145565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:11 Heat of formation + Delta-G solvation = -43.499280 kcal Electronic energy + Delta-G solvation = -24056.143731 eV Core-core repulsion = 20852.423346 eV Total energy + Delta-G solvation = -3203.720385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18309 -38.04984 -35.21416 -34.65142 -33.01198 -32.47429 -29.72055 -29.21613 -27.77777 -25.90670 -24.74720 -24.08230 -23.00789 -21.48588 -20.74588 -19.54123 -18.21909 -16.64909 -16.40787 -16.17404 -15.07721 -14.80529 -14.73567 -14.44930 -14.20809 -13.90242 -13.53178 -13.45715 -13.18414 -12.88662 -12.57064 -12.28537 -12.22376 -12.09075 -11.93363 -11.71457 -11.41004 -11.26295 -11.23736 -11.05123 -10.93551 -10.80568 -10.62595 -10.57257 -10.41496 -10.17168 -9.99480 -9.88113 -9.62804 -9.44106 -8.45521 -7.66410 -7.62887 -6.06138 -4.11016 3.28064 3.34123 3.36362 3.41644 3.98162 4.10809 4.43167 4.85832 4.89590 5.00944 5.12927 5.20742 5.28312 5.28908 5.33240 5.33962 5.40506 5.62917 5.67807 5.71795 5.79085 5.81551 5.83554 5.91569 5.96403 5.98001 6.02401 6.10799 6.11735 6.17823 6.21711 6.25215 6.27659 6.34567 6.46180 6.50487 6.72292 7.01810 7.27758 7.36509 7.42610 7.53563 7.90099 8.21779 8.40996 8.88215 9.07991 9.54215 11.01908 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.004972 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.489772 B = 5630.405776 C = 6331.613247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.080 4.080 4 H 0.070 0.930 5 C -0.116 4.116 6 C -0.110 4.110 7 C 0.039 3.961 8 N -0.510 5.510 9 C 0.058 3.942 10 H 0.099 0.901 11 C -0.140 4.140 12 C 0.480 3.520 13 O -0.540 6.540 14 N -0.599 5.599 15 C 0.081 3.919 16 C 0.244 3.756 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.036 3.964 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.030 0.970 44 H 0.042 0.958 45 H 0.263 0.737 46 H 0.070 0.930 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.818 2.004 12.952 17.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.099 4.099 4 H 0.088 0.912 5 C -0.153 4.153 6 C -0.148 4.148 7 C -0.088 4.088 8 N -0.234 5.234 9 C -0.055 4.055 10 H 0.117 0.883 11 C -0.198 4.198 12 C 0.265 3.735 13 O -0.419 6.419 14 N -0.331 5.331 15 C -0.063 4.063 16 C 0.125 3.875 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.091 4.091 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.204 1.730 12.803 17.772 hybrid contribution 0.510 0.304 -1.586 1.693 sum -11.694 2.034 11.217 16.332 Atomic orbital electron populations 1.21789 0.96109 1.01149 1.01707 1.21520 0.95548 0.96613 1.02032 1.21165 0.95405 0.95301 0.97995 0.91167 1.21660 0.99768 0.96079 0.97805 1.21510 0.95128 0.96970 1.01222 1.22247 0.95998 0.98899 0.91697 1.62493 1.10143 1.17170 1.33586 1.21936 0.88351 1.01082 0.94086 0.88317 1.21805 1.01704 1.00188 0.96066 1.21514 0.82359 0.82703 0.86899 1.90586 1.65995 1.34741 1.50562 1.48308 1.13768 1.42177 1.28868 1.21704 0.98005 0.92415 0.94194 1.19270 0.91235 0.95487 0.81522 1.21408 1.30096 1.10695 0.94173 0.92602 1.24932 0.95055 0.95314 0.98766 1.69932 1.32300 1.25409 1.25730 0.86512 0.78607 0.80228 0.82180 1.20603 1.21067 1.19917 1.22498 0.94132 0.89781 1.02698 0.92985 0.92592 0.93149 0.91902 0.92190 0.91982 0.92237 0.91924 0.91791 0.91957 0.91638 0.91149 0.91785 0.91824 0.93644 0.90824 0.92257 0.95168 0.93996 0.92725 0.91215 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 37.15 0.36 -1.07 16 2 C -0.12 -1.35 5.41 -26.73 -0.14 -1.49 16 3 C -0.08 -1.01 2.35 -90.54 -0.21 -1.23 16 4 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 5 C -0.12 -1.51 4.98 -26.61 -0.13 -1.64 16 6 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 7 C 0.04 0.65 4.90 -3.84 -0.02 0.63 16 8 N -0.51 -7.88 4.73 -228.08 -1.08 -8.96 16 9 C 0.06 0.90 2.29 -68.87 -0.16 0.74 16 10 H 0.10 1.41 6.01 -51.93 -0.31 1.09 16 11 C -0.14 -1.80 8.59 37.16 0.32 -1.48 16 12 C 0.48 9.85 5.93 -10.99 -0.07 9.79 16 13 O -0.54 -13.17 11.91 5.55 0.07 -13.10 16 14 N -0.60 -12.71 2.86 -182.96 -0.52 -13.23 16 15 C 0.08 1.28 10.04 59.85 0.60 1.89 16 16 C 0.24 6.43 5.16 -5.19 -0.03 6.40 16 17 C -0.52 -14.94 9.39 -34.44 -0.32 -15.27 16 18 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 21 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.04 0.55 3.91 -3.83 -0.02 0.53 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.53 6.62 -51.93 -0.34 0.19 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.67 6.70 -51.93 -0.35 0.32 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.28 6.04 -51.93 -0.31 0.97 16 36 H 0.07 1.05 8.12 -51.93 -0.42 0.62 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.88 6.19 -51.93 -0.32 0.55 16 39 H 0.06 0.76 7.90 -51.93 -0.41 0.35 16 40 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 41 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 42 H 0.06 0.78 5.83 -51.93 -0.30 0.48 16 43 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 44 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.07 0.98 5.82 -51.93 -0.30 0.67 16 47 H 0.07 1.41 5.65 -51.93 -0.29 1.11 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -31.80 353.78 -8.93 -40.73 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.36 Total: 0.48 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -0.08 Total: -2.20 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.86 Total: -48.19 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.07 Total: -13.10 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.80 -8.93 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042145565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.773 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds