Wall clock time and date at job start Tue Mar 31 2020 05:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46972 * 2 1 4 4 H 1.09003 * 109.50592 * 55.07645 * 3 2 1 5 5 C 1.53122 * 109.50371 * 294.99834 * 3 2 1 6 6 C 1.53117 * 109.16084 * 182.40554 * 5 3 2 7 7 C 1.53031 * 109.27898 * 57.65574 * 6 5 3 8 8 N 1.46850 * 109.52447 * 300.81764 * 7 6 5 9 9 C 1.46904 * 111.00117 * 185.83700 * 8 7 6 10 10 H 1.09001 * 109.46625 * 66.01720 * 9 8 7 11 11 C 1.52997 * 109.46851 * 186.01180 * 9 8 7 12 12 C 1.50694 * 109.47564 * 306.01796 * 9 8 7 13 13 O 1.21290 * 119.99416 * 333.91657 * 12 9 8 14 14 N 1.34770 * 120.00464 * 153.91977 * 12 9 8 15 15 C 1.46507 * 119.99758 * 359.97438 * 14 12 9 16 16 C 1.46501 * 120.00142 * 180.02562 * 14 12 9 17 17 C 1.50697 * 109.47424 * 90.00022 * 16 14 12 18 18 H 1.08005 * 119.99931 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00289 * 180.02562 * 17 16 14 20 20 N 1.31513 * 119.99733 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99997 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47313 * 89.99860 * 21 19 17 23 23 H 1.48497 * 109.46874 * 209.99687 * 21 19 17 24 24 H 1.48504 * 109.47235 * 329.99715 * 21 19 17 25 25 C 1.46848 * 111.19532 * 61.74366 * 8 7 6 26 26 H 1.09001 * 109.47596 * 300.00247 * 1 2 3 27 27 H 1.09002 * 109.47500 * 60.00513 * 1 2 3 28 28 H 1.08998 * 109.47154 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47601 * 239.99735 * 2 1 3 30 30 H 1.09002 * 109.47500 * 119.99487 * 2 1 3 31 31 H 1.09004 * 109.52234 * 302.31165 * 5 3 2 32 32 H 1.08998 * 109.52307 * 62.49682 * 5 3 2 33 33 H 1.09005 * 109.49762 * 177.59531 * 6 5 3 34 34 H 1.08998 * 109.50287 * 297.71146 * 6 5 3 35 35 H 1.09005 * 109.46467 * 60.83549 * 7 6 5 36 36 H 1.09000 * 109.46405 * 180.81550 * 7 6 5 37 37 H 1.08994 * 109.47267 * 300.00378 * 11 9 8 38 38 H 1.09001 * 109.47066 * 60.00809 * 11 9 8 39 39 H 1.09002 * 109.46630 * 180.02562 * 11 9 8 40 40 H 1.08993 * 109.46833 * 90.00218 * 15 14 12 41 41 H 1.09000 * 109.46611 * 210.00121 * 15 14 12 42 42 H 1.08995 * 109.46965 * 330.00117 * 15 14 12 43 43 H 1.09007 * 109.46997 * 209.99898 * 16 14 12 44 44 H 1.08995 * 109.47394 * 329.99489 * 16 14 12 45 45 H 0.96995 * 119.99693 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.45893 * 178.24313 * 25 8 7 47 47 H 1.09004 * 109.46565 * 58.27365 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6066 1.9817 0.8424 5 6 1.6352 2.1278 -1.3081 6 6 2.2005 3.5507 -1.3259 7 6 3.7214 3.4922 -1.1667 8 7 4.0571 2.8287 0.0997 9 6 5.5035 2.8774 0.3522 10 1 5.8098 3.9113 0.5114 11 6 5.8318 2.0507 1.5971 12 6 6.2401 2.3123 -0.8348 13 8 5.6954 1.5055 -1.5584 14 7 7.5039 2.7032 -1.0922 15 6 8.1615 3.6780 -0.2183 16 6 8.2197 2.1542 -2.2465 17 6 7.9728 3.0250 -3.4514 18 1 7.3451 3.8997 -3.3660 19 6 8.5475 2.7045 -4.6631 20 7 9.3114 1.6391 -4.7672 21 14 8.2408 3.7836 -6.1567 22 1 9.2807 4.8415 -6.2250 23 1 8.2975 2.9537 -7.3868 24 1 6.9005 4.4133 -6.0457 25 6 3.5655 1.4451 0.1208 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0353 1.5663 -2.1524 32 1 0.5482 2.1668 -1.3778 33 1 1.9519 4.0292 -2.2732 34 1 1.7703 4.1234 -0.5043 35 1 4.1521 2.9310 -1.9960 36 1 4.1256 4.5045 -1.1643 37 1 5.2991 2.4595 2.4556 38 1 5.5254 1.0169 1.4379 39 1 6.9049 2.0872 1.7847 40 1 8.6806 3.1543 0.5843 41 1 8.8795 4.2587 -0.7974 42 1 7.4134 4.3462 0.2082 43 1 9.2880 2.1257 -2.0316 44 1 7.8628 1.1444 -2.4487 45 1 9.7160 1.4139 -5.6195 46 1 3.8564 0.9707 1.0580 47 1 3.9969 0.8936 -0.7146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042145565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:10 Heat of formation + Delta-G solvation = -64.231030 kcal Electronic energy + Delta-G solvation = -24057.042728 eV Core-core repulsion = 20852.423346 eV Total energy + Delta-G solvation = -3204.619382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61018 -39.41314 -36.71438 -36.10655 -34.80065 -33.92503 -31.02940 -30.24467 -29.62182 -27.40503 -26.15665 -25.36490 -24.52752 -22.80491 -21.98166 -20.68631 -19.75003 -18.74420 -18.02109 -17.55059 -16.79993 -16.27065 -15.97585 -15.95727 -15.50668 -15.09026 -14.98573 -14.57758 -14.51785 -14.14768 -14.05997 -13.61125 -13.57724 -13.48447 -13.23878 -13.05388 -13.00439 -12.81685 -12.59411 -12.49557 -12.32545 -12.23374 -12.12503 -11.88925 -11.80764 -11.67786 -11.46019 -11.10074 -11.00277 -10.94667 -10.68562 -9.42670 -9.10485 -8.26606 -6.41922 1.31778 1.34807 1.44952 1.79876 2.28752 2.44539 2.86840 3.02510 3.69911 3.80189 3.81755 4.00225 4.07285 4.16109 4.23029 4.34152 4.43509 4.45696 4.56614 4.64118 4.71231 4.74135 4.77431 4.82798 4.85256 4.90482 4.95545 4.97141 5.01769 5.05837 5.12836 5.13245 5.18028 5.21099 5.24543 5.27706 5.32160 5.50455 5.51822 5.62586 5.81306 5.98417 6.02010 6.08838 6.65454 6.77526 7.24473 7.47281 8.80246 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.004972 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.489772 B = 5630.405776 C = 6331.613247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.073 4.073 4 H 0.088 0.912 5 C -0.114 4.114 6 C -0.105 4.105 7 C 0.040 3.960 8 N -0.495 5.495 9 C 0.065 3.935 10 H 0.122 0.878 11 C -0.134 4.134 12 C 0.470 3.530 13 O -0.589 6.589 14 N -0.609 5.609 15 C 0.076 3.924 16 C 0.261 3.739 17 C -0.541 4.541 18 H 0.050 0.950 19 C 0.008 3.992 20 N -0.928 5.928 21 Si 0.967 3.033 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.274 1.274 25 C 0.038 3.962 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.011 0.989 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.021 0.979 44 H -0.007 1.007 45 H 0.267 0.733 46 H 0.084 0.916 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.330 4.013 14.922 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.092 4.092 4 H 0.106 0.894 5 C -0.152 4.152 6 C -0.143 4.143 7 C -0.088 4.088 8 N -0.218 5.218 9 C -0.047 4.047 10 H 0.140 0.860 11 C -0.192 4.192 12 C 0.258 3.742 13 O -0.470 6.470 14 N -0.340 5.340 15 C -0.066 4.066 16 C 0.139 3.861 17 C -0.579 4.579 18 H 0.068 0.932 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.791 3.209 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.199 1.199 25 C -0.090 4.090 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.029 0.971 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.039 0.961 44 H 0.011 0.989 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -13.708 3.766 14.816 20.533 hybrid contribution 1.007 -0.372 -2.182 2.432 sum -12.702 3.394 12.633 18.233 Atomic orbital electron populations 1.21752 0.94234 1.01972 1.02310 1.21506 0.97132 0.95573 1.01390 1.21150 0.93472 0.96352 0.98220 0.89360 1.21659 1.01078 0.95484 0.96970 1.21506 0.92874 0.97536 1.02378 1.22221 0.98016 0.98198 0.90384 1.62634 1.09797 1.17028 1.32337 1.22136 0.87645 1.02330 0.92616 0.86021 1.21824 1.02982 0.98997 0.95355 1.22614 0.81896 0.81873 0.87817 1.90584 1.66993 1.36884 1.52542 1.48360 1.14259 1.43182 1.28233 1.21995 0.98784 0.92006 0.93834 1.18695 0.90827 0.93137 0.83441 1.21655 1.30067 1.10767 0.95454 0.93210 1.25856 0.94611 0.96667 1.01942 1.70051 1.33076 1.26950 1.26725 0.85433 0.78750 0.78677 0.78073 1.18553 1.20549 1.19938 1.22490 0.95846 0.89135 1.01494 0.91607 0.92654 0.92333 0.94072 0.91414 0.95057 0.89754 0.91482 0.89533 0.97068 0.91171 0.88024 0.93137 0.90619 0.90813 0.91649 0.88896 0.96110 0.98890 0.92383 0.89829 0.95151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.67 71.98 0.70 -1.76 16 2 C -0.12 -2.57 5.41 30.59 0.17 -2.41 16 3 C -0.07 -1.77 2.35 -10.74 -0.03 -1.79 16 4 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 5 C -0.11 -2.92 4.98 30.67 0.15 -2.77 16 6 C -0.11 -2.72 6.09 30.64 0.19 -2.53 16 7 C 0.04 1.32 4.90 86.32 0.42 1.74 16 8 N -0.50 -14.75 4.73 -875.50 -4.14 -18.88 16 9 C 0.06 1.93 2.29 44.17 0.10 2.03 16 10 H 0.12 3.07 6.01 -2.39 -0.01 3.06 16 11 C -0.13 -3.10 8.59 71.98 0.62 -2.48 16 12 C 0.47 19.86 5.93 87.66 0.52 20.38 16 13 O -0.59 -30.75 11.91 -3.06 -0.04 -30.78 16 14 N -0.61 -26.40 2.86 -851.14 -2.43 -28.83 16 15 C 0.08 2.29 10.04 127.77 1.28 3.58 16 16 C 0.26 14.46 5.16 85.63 0.44 14.91 16 17 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 18 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 19 C 0.01 0.48 5.46 84.66 0.46 0.95 16 20 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 21 Si 0.97 45.75 29.54 68.60 2.03 47.78 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 25 C 0.04 1.14 3.91 86.33 0.34 1.48 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.94 6.62 -2.39 -0.02 0.92 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 0.97 8.14 -2.38 -0.02 0.96 16 32 H 0.08 1.73 6.70 -2.39 -0.02 1.72 16 33 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.01 0.48 6.04 -2.38 -0.01 0.47 16 36 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.05 1.31 6.19 -2.39 -0.01 1.30 16 39 H 0.07 1.58 7.90 -2.39 -0.02 1.57 16 40 H 0.07 1.82 8.12 -2.39 -0.02 1.81 16 41 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16 42 H 0.09 2.17 5.83 -2.39 -0.01 2.15 16 43 H 0.02 1.17 8.07 -2.38 -0.02 1.15 16 44 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 46 H 0.08 2.26 5.82 -2.39 -0.01 2.24 16 47 H 0.03 1.22 5.65 -2.38 -0.01 1.20 16 Total: -1.00 -74.32 353.78 2.23 -72.09 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.92 Total: 15.91 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.60 Total: -0.37 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -6.28 Total: -104.63 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.04 Total: -30.78 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -74.32 2.23 -72.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042145565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.855 kcal (2) G-P(sol) polarization free energy of solvation -74.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds