Wall clock time and date at job start Tue Mar 31 2020 05:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47555 * 2 1 4 4 H 1.09002 * 109.49852 * 304.91901 * 3 2 1 5 5 C 1.53117 * 109.50128 * 65.00060 * 3 2 1 6 6 C 1.53119 * 109.16141 * 177.59881 * 5 3 2 7 7 C 1.53039 * 109.27487 * 302.34608 * 6 5 3 8 8 N 1.46845 * 109.52792 * 59.17846 * 7 6 5 9 9 C 1.46893 * 111.00323 * 174.16374 * 8 7 6 10 10 H 1.08996 * 109.47377 * 186.05126 * 9 8 7 11 11 C 1.53009 * 109.46931 * 306.04651 * 9 8 7 12 12 C 1.50697 * 109.47512 * 66.04154 * 9 8 7 13 13 O 1.21283 * 119.99859 * 328.79624 * 12 9 8 14 14 N 1.34783 * 119.99990 * 148.79153 * 12 9 8 15 15 C 1.46494 * 119.99656 * 184.36430 * 14 12 9 16 16 C 1.46493 * 119.99829 * 4.36665 * 14 12 9 17 17 C 1.50705 * 109.47202 * 85.38958 * 16 14 12 18 18 H 1.07999 * 119.99900 * 0.02562 * 17 16 14 19 19 C 1.37876 * 120.00260 * 179.97438 * 17 16 14 20 20 N 1.31519 * 119.99814 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00229 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47206 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47029 * 300.00255 * 21 19 17 24 24 H 1.48503 * 109.47231 * 60.00080 * 21 19 17 25 25 C 1.46849 * 111.19716 * 298.25869 * 8 7 6 26 26 H 1.09002 * 109.46978 * 59.99855 * 1 2 3 27 27 H 1.09001 * 109.47329 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46952 * 300.00399 * 1 2 3 29 29 H 1.09005 * 109.47331 * 239.99819 * 2 1 3 30 30 H 1.09000 * 109.47496 * 120.00179 * 2 1 3 31 31 H 1.08996 * 109.52534 * 57.69091 * 5 3 2 32 32 H 1.09003 * 109.57348 * 297.53424 * 5 3 2 33 33 H 1.08995 * 109.50559 * 182.40539 * 6 5 3 34 34 H 1.09002 * 109.50157 * 62.28405 * 6 5 3 35 35 H 1.08999 * 109.46264 * 299.15769 * 7 6 5 36 36 H 1.08994 * 109.45355 * 179.19144 * 7 6 5 37 37 H 1.09005 * 109.46824 * 305.92169 * 11 9 8 38 38 H 1.08997 * 109.47065 * 65.91974 * 11 9 8 39 39 H 1.09000 * 109.47202 * 185.92884 * 11 9 8 40 40 H 1.09000 * 109.47463 * 272.49334 * 15 14 12 41 41 H 1.08996 * 109.47646 * 32.49414 * 15 14 12 42 42 H 1.09004 * 109.46998 * 152.49656 * 15 14 12 43 43 H 1.08996 * 109.47523 * 325.39455 * 16 14 12 44 44 H 1.08997 * 109.47346 * 205.38932 * 16 14 12 45 45 H 0.97004 * 119.99972 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.46529 * 181.75420 * 25 8 7 47 47 H 1.08997 * 109.46177 * 301.72623 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6069 1.9816 -0.8425 5 6 1.6354 2.1277 1.3081 6 6 2.2008 3.5506 1.3259 7 6 3.7217 3.4920 1.1666 8 7 4.0574 2.8285 -0.0997 9 6 5.5037 2.8770 -0.3522 10 1 5.7131 2.4754 -1.3436 11 6 5.9861 4.3271 -0.2771 12 6 6.2228 2.0541 0.6854 13 8 5.7666 1.9566 1.8049 14 7 7.3728 1.4263 0.3692 15 6 8.0216 0.5497 1.3474 16 6 7.9740 1.6207 -0.9525 17 6 8.8327 2.8590 -0.9366 18 1 8.9221 3.4426 -0.0323 19 6 9.5052 3.2463 -2.0762 20 7 9.3967 2.5354 -3.1774 21 14 10.5702 4.7808 -2.0564 22 1 11.1795 4.9779 -3.3962 23 1 9.7337 5.9595 -1.7152 24 1 11.6435 4.6253 -1.0420 25 6 3.5657 1.4449 -0.1208 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0355 1.5663 2.1524 32 1 0.5484 2.1668 1.3789 33 1 1.9523 4.0292 2.2731 34 1 1.7706 4.1234 0.5042 35 1 4.1524 2.9309 1.9960 36 1 4.1258 4.5042 1.1644 37 1 5.3930 4.9428 -0.9533 38 1 5.8733 4.6951 0.7426 39 1 7.0356 4.3763 -0.5673 40 1 8.6850 1.1394 1.9801 41 1 7.2625 0.0696 1.9649 42 1 8.6002 -0.2122 0.8250 43 1 7.1860 1.7346 -1.6969 44 1 8.5882 0.7558 -1.2030 45 1 9.8695 2.8081 -3.9793 46 1 3.8566 0.9703 -1.0580 47 1 3.9970 0.8934 0.7146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042145566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:14 Heat of formation + Delta-G solvation = -47.186077 kcal Electronic energy + Delta-G solvation = -24186.216872 eV Core-core repulsion = 20982.336615 eV Total energy + Delta-G solvation = -3203.880257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.11275 -38.08765 -35.24628 -34.79506 -32.58347 -32.44800 -30.26865 -28.66786 -27.70132 -26.26550 -24.67750 -23.10846 -22.96960 -22.28145 -20.61549 -19.51608 -18.11813 -16.58558 -16.40610 -16.02819 -15.09777 -14.77226 -14.68788 -14.48552 -14.27126 -13.93619 -13.56201 -13.37059 -13.07338 -12.64499 -12.44391 -12.27235 -12.05636 -11.89708 -11.82807 -11.56082 -11.50411 -11.44389 -11.08700 -10.98188 -10.93386 -10.77539 -10.62055 -10.53406 -10.39898 -10.12227 -9.88415 -9.87317 -9.75697 -9.47489 -8.58772 -7.74634 -7.54915 -6.21550 -4.28201 3.22538 3.28027 3.28541 3.37181 3.98197 4.27428 4.31293 4.85231 4.96460 5.01603 5.11130 5.24949 5.35024 5.38424 5.40093 5.60408 5.70694 5.75985 5.81737 5.85600 5.88423 5.95051 5.98353 5.99262 6.08728 6.10316 6.16109 6.19966 6.20311 6.30786 6.34125 6.40638 6.46788 6.49320 6.56249 6.69632 6.80564 6.97492 7.12069 7.41791 7.52260 7.54581 7.73347 8.01955 8.29647 8.75319 8.99364 9.38468 10.85120 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.004620 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.181845 B = 6058.768876 C = 6227.433155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.080 4.080 4 H 0.075 0.925 5 C -0.113 4.113 6 C -0.114 4.114 7 C 0.028 3.972 8 N -0.513 5.513 9 C 0.072 3.928 10 H 0.109 0.891 11 C -0.144 4.144 12 C 0.493 3.507 13 O -0.576 6.576 14 N -0.598 5.598 15 C 0.094 3.906 16 C 0.235 3.765 17 C -0.536 4.536 18 H 0.061 0.939 19 C 0.067 3.933 20 N -0.889 5.889 21 Si 0.894 3.106 22 H -0.285 1.285 23 H -0.273 1.273 24 H -0.276 1.276 25 C 0.052 3.948 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.036 0.964 45 H 0.266 0.734 46 H 0.067 0.933 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.644 -2.055 4.814 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.099 4.099 4 H 0.093 0.907 5 C -0.151 4.151 6 C -0.152 4.152 7 C -0.099 4.099 8 N -0.237 5.237 9 C -0.039 4.039 10 H 0.126 0.874 11 C -0.202 4.202 12 C 0.280 3.720 13 O -0.458 6.458 14 N -0.328 5.328 15 C -0.050 4.050 16 C 0.116 3.884 17 C -0.575 4.575 18 H 0.080 0.920 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.722 3.278 22 H -0.211 1.211 23 H -0.199 1.199 24 H -0.202 1.202 25 C -0.076 4.076 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.019 -1.874 4.787 13.998 hybrid contribution 1.292 0.323 0.436 1.401 sum -11.728 -1.551 5.223 12.932 Atomic orbital electron populations 1.21786 0.95998 1.01158 1.01790 1.21535 0.95688 0.96600 1.01934 1.21154 0.94984 0.95373 0.98360 0.90663 1.21638 0.99729 0.96294 0.97414 1.21577 0.96089 0.96586 1.00975 1.22519 0.94891 0.99853 0.92630 1.62466 1.11346 1.15875 1.33964 1.21807 0.86025 0.97450 0.98617 0.87365 1.21921 1.04299 0.92667 1.01282 1.21757 0.81118 0.79858 0.89264 1.90475 1.67651 1.64649 1.23046 1.48338 1.22753 1.44467 1.17285 1.21421 0.97143 0.93724 0.92713 1.19510 0.93751 0.97569 0.77608 1.21396 1.28829 1.09897 0.97340 0.92041 1.24924 0.96353 0.97120 0.95221 1.69907 1.42498 1.38831 1.01469 0.86606 0.80727 0.83219 0.77275 1.21092 1.19874 1.20179 1.22167 0.94646 0.89756 1.01015 0.92821 0.93141 0.92638 0.92004 0.92209 0.92388 0.92295 0.92242 0.91908 0.90346 0.91183 0.91792 0.93303 0.88512 0.93578 0.92426 0.91794 0.94304 0.94621 0.92386 0.91420 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 37.16 0.36 -1.06 16 2 C -0.12 -1.35 5.41 -26.73 -0.14 -1.49 16 3 C -0.08 -1.04 2.35 -90.54 -0.21 -1.25 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 5 C -0.11 -1.42 4.98 -26.61 -0.13 -1.55 16 6 C -0.11 -1.53 6.09 -26.65 -0.16 -1.69 16 7 C 0.03 0.46 4.64 -3.83 -0.02 0.45 16 8 N -0.51 -8.77 4.70 -228.08 -1.07 -9.84 16 9 C 0.07 1.38 2.29 -68.87 -0.16 1.23 16 10 H 0.11 2.20 5.93 -51.93 -0.31 1.89 16 11 C -0.14 -2.70 8.53 37.16 0.32 -2.38 16 12 C 0.49 10.30 5.73 -10.98 -0.06 10.24 16 13 O -0.58 -12.73 12.31 5.56 0.07 -12.66 16 14 N -0.60 -12.69 2.87 -182.96 -0.52 -13.22 16 15 C 0.09 1.74 10.42 59.84 0.62 2.37 16 16 C 0.24 5.50 5.02 -5.19 -0.03 5.47 16 17 C -0.54 -13.52 7.30 -34.44 -0.25 -13.77 16 18 H 0.06 1.59 7.57 -52.49 -0.40 1.19 16 19 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -23.94 13.29 55.43 0.74 -23.20 16 21 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.05 0.84 4.26 -3.83 -0.02 0.82 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.51 6.62 -51.93 -0.34 0.16 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.64 6.70 -51.93 -0.35 0.29 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.49 5.33 -51.93 -0.28 1.21 16 36 H 0.07 1.14 6.00 -51.93 -0.31 0.83 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.89 6.56 -51.93 -0.34 0.55 16 39 H 0.10 2.04 5.63 -51.93 -0.29 1.74 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.03 7.56 -51.93 -0.39 0.63 16 42 H 0.06 1.08 7.83 -51.93 -0.41 0.67 16 43 H 0.04 0.94 5.90 -51.93 -0.31 0.63 16 44 H 0.04 0.87 7.82 -51.93 -0.41 0.47 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 47 H 0.04 0.78 6.55 -51.93 -0.34 0.44 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -27.03 350.02 -8.77 -35.81 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -8.25 Total: 3.72 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 0.02 Total: -0.99 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.86 Total: -46.27 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.07 Total: -12.66 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.03 -8.77 -35.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042145566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.379 kcal (2) G-P(sol) polarization free energy of solvation -27.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds