Wall clock time and date at job start Tue Mar 31 2020 06:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 N 1.46908 * 109.47402 * 180.02562 * 3 2 1 5 5 C 1.46897 * 111.00358 * 190.00321 * 4 3 2 6 6 C 1.52996 * 109.47115 * 73.86775 * 5 4 3 7 7 C 1.50707 * 109.47206 * 174.85160 * 6 5 4 8 8 O 1.21275 * 119.99366 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00167 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00084 * 0.02562 * 9 7 6 11 11 C 1.46495 * 119.99974 * 179.97438 * 9 7 6 12 12 C 1.50704 * 109.46793 * 90.00377 * 11 9 7 13 13 H 1.07998 * 120.00054 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99971 * 179.97438 * 12 11 9 15 15 N 1.31514 * 120.00098 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99939 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46970 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46998 * 120.00458 * 16 14 12 19 19 H 1.48498 * 109.47134 * 240.00343 * 16 14 12 20 20 C 1.46900 * 110.99749 * 66.04515 * 4 3 2 21 21 C 1.53003 * 109.47054 * 195.83454 * 20 4 3 22 22 C 1.52990 * 117.49831 * 243.79561 * 21 20 4 23 23 C 1.52995 * 60.00309 * 252.51086 * 22 21 20 24 24 H 1.08999 * 109.46963 * 59.99834 * 1 2 3 25 25 H 1.08993 * 109.46917 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46737 * 300.00124 * 1 2 3 27 27 H 1.09002 * 109.47473 * 240.00427 * 2 1 3 28 28 H 1.09002 * 109.47415 * 120.00400 * 2 1 3 29 29 H 1.08999 * 109.47303 * 299.99957 * 3 2 1 30 30 H 1.09003 * 109.46952 * 60.00543 * 3 2 1 31 31 H 1.08995 * 109.47234 * 193.87331 * 5 4 3 32 32 H 1.09002 * 109.46961 * 313.87689 * 5 4 3 33 33 H 1.08997 * 109.47913 * 294.85708 * 6 5 4 34 34 H 1.09005 * 109.46939 * 54.85648 * 6 5 4 35 35 H 1.09000 * 109.47410 * 89.99620 * 10 9 7 36 36 H 1.09002 * 109.46772 * 209.99971 * 10 9 7 37 37 H 1.09003 * 109.46492 * 329.99458 * 10 9 7 38 38 H 1.08999 * 109.47420 * 209.99969 * 11 9 7 39 39 H 1.09001 * 109.47603 * 330.00664 * 11 9 7 40 40 H 0.97003 * 119.99861 * 179.97438 * 15 14 12 41 41 H 1.08995 * 109.47291 * 315.83463 * 20 4 3 42 42 H 1.08998 * 109.46855 * 75.84004 * 20 4 3 43 43 H 1.09003 * 115.54657 * 29.50924 * 21 20 4 44 44 H 1.08998 * 117.50065 * 0.02562 * 22 21 20 45 45 H 1.09001 * 117.50067 * 145.02230 * 22 21 20 46 46 H 1.09003 * 117.50284 * 252.51479 * 23 22 21 47 47 H 1.08997 * 117.49860 * 107.48666 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0357 2.7931 0.2376 6 6 3.8449 3.1625 1.7100 7 6 4.4970 4.4935 1.9825 8 8 5.0586 5.0882 1.0871 9 7 4.4562 5.0229 3.2212 10 6 3.7783 4.3042 4.3030 11 6 5.0906 6.3165 3.4863 12 6 4.0931 7.4220 3.2542 13 1 3.0871 7.1847 2.9411 14 6 4.4645 8.7364 3.4427 15 7 5.6893 9.0254 3.8245 16 14 3.2282 10.1069 3.1543 17 1 1.9300 9.5218 2.7327 18 1 3.0395 10.8757 4.4107 19 1 3.7322 11.0124 2.0908 20 6 4.0350 0.8859 -1.2542 21 6 5.5134 0.5348 -1.0758 22 6 6.5288 1.2994 -1.9273 23 6 6.2185 -0.1660 -2.2388 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 5.0971 2.8178 -0.0087 32 1 3.5006 3.5072 -0.3884 33 1 2.7801 3.2270 1.9335 34 1 4.3023 2.3983 2.3385 35 1 4.4893 3.6477 4.8046 36 1 3.3771 5.0208 5.0198 37 1 2.9639 3.7093 3.8894 38 1 5.4336 6.3479 4.5204 39 1 5.9410 6.4481 2.8172 40 1 5.9507 9.9501 3.9567 41 1 3.4769 -0.0133 -1.5148 42 1 3.9301 1.6224 -2.0509 43 1 5.8118 0.2564 -0.0650 44 1 6.1437 2.0529 -2.6143 45 1 7.4956 1.5243 -1.4768 46 1 6.9810 -0.9052 -1.9932 47 1 5.6290 -0.3769 -3.1311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042490270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:49 Heat of formation + Delta-G solvation = -19.810819 kcal Electronic energy + Delta-G solvation = -22661.908935 eV Core-core repulsion = 19459.215758 eV Total energy + Delta-G solvation = -3202.693177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.28281 -38.39564 -36.49047 -34.77192 -33.48526 -32.59660 -30.79565 -27.83010 -27.24325 -25.92311 -25.04820 -22.95784 -22.45001 -21.57739 -21.10818 -20.18178 -18.28115 -16.63818 -16.49316 -15.90810 -15.68645 -15.29390 -15.04735 -14.85737 -14.47472 -14.23009 -14.00205 -13.46908 -13.25786 -12.74085 -12.52212 -12.33668 -12.18456 -12.09378 -11.85055 -11.80102 -11.62106 -11.53655 -11.31128 -11.15851 -11.08636 -10.90708 -10.82896 -10.61356 -10.55034 -10.26316 -10.14008 -9.90936 -9.58299 -8.83301 -8.42198 -8.36188 -7.58789 -6.02546 -4.07119 3.30346 3.37502 3.41137 3.52148 3.57957 3.79457 4.17531 4.46767 4.64777 4.75105 4.83099 4.89029 5.00236 5.08236 5.24309 5.28055 5.30744 5.33496 5.38428 5.41579 5.50128 5.52760 5.58185 5.65419 5.69781 5.71798 5.83227 5.86014 5.92205 5.96913 6.01640 6.03738 6.09162 6.17196 6.20584 6.26060 6.28968 7.06814 7.07191 7.12070 7.48062 7.59054 7.94380 8.26237 8.48006 8.93202 9.15812 9.58017 11.05526 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.003682 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.232611 B = 7602.804931 C = 8419.895922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.050 3.950 4 N -0.539 5.539 5 C 0.072 3.928 6 C -0.132 4.132 7 C 0.504 3.496 8 O -0.546 6.546 9 N -0.604 5.604 10 C 0.085 3.915 11 C 0.244 3.756 12 C -0.524 4.524 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.084 3.916 21 C -0.143 4.143 22 C -0.182 4.182 23 C -0.181 4.181 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.262 0.738 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.112 0.888 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 -20.454 -6.958 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.077 4.077 4 N -0.262 5.262 5 C -0.056 4.056 6 C -0.173 4.173 7 C 0.290 3.710 8 O -0.424 6.424 9 N -0.336 5.336 10 C -0.060 4.060 11 C 0.125 3.875 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.044 4.044 21 C -0.161 4.161 22 C -0.219 4.219 23 C -0.219 4.219 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.130 0.870 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.417 -20.259 -6.979 22.102 hybrid contribution -0.950 1.421 -0.630 1.822 sum -6.367 -18.838 -7.609 21.291 Atomic orbital electron populations 1.21745 0.95787 1.01575 1.01884 1.21561 0.95214 0.96529 1.02536 1.22218 0.87413 0.96990 1.01119 1.61945 1.07153 1.22915 1.34218 1.21827 1.01494 0.87223 0.95068 1.21612 1.01654 0.96022 0.97992 1.20337 0.81013 0.86733 0.82878 1.90657 1.45038 1.62944 1.43760 1.48153 1.54707 1.22572 1.08182 1.21624 0.96251 0.96788 0.91292 1.19274 0.93896 0.77426 0.96901 1.21482 0.97917 0.91045 1.45888 0.92486 1.24945 0.95430 0.98678 0.95141 1.69947 1.17397 1.19054 1.47024 0.86449 0.81324 0.81895 0.77790 1.19843 1.20956 1.20876 1.21699 0.93386 0.99008 0.90311 1.22283 0.92969 1.04164 0.96716 1.23063 1.00801 0.94423 1.03571 1.22932 1.03570 0.95685 0.99712 0.92957 0.92689 0.92539 0.92137 0.91087 0.94995 0.90443 0.89513 0.94136 0.89941 0.88931 0.93774 0.90933 0.92440 0.95084 0.93879 0.92800 0.90314 0.94683 0.86990 0.88934 0.88758 0.88913 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.03 5.90 -26.73 -0.16 -1.19 16 3 C 0.05 0.53 4.80 -3.82 -0.02 0.51 16 4 N -0.54 -6.35 4.41 -234.63 -1.03 -7.38 16 5 C 0.07 1.05 4.17 -3.83 -0.02 1.04 16 6 C -0.13 -2.01 4.25 -27.88 -0.12 -2.13 16 7 C 0.50 10.66 7.67 -10.98 -0.08 10.57 16 8 O -0.55 -13.93 15.50 5.56 0.09 -13.84 16 9 N -0.60 -13.10 2.86 -182.95 -0.52 -13.62 16 10 C 0.08 1.37 10.24 59.85 0.61 1.98 16 11 C 0.24 6.54 5.16 -5.19 -0.03 6.51 16 12 C -0.52 -15.14 9.39 -34.44 -0.32 -15.47 16 13 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 C 0.08 0.89 5.12 -3.82 -0.02 0.87 16 21 C -0.14 -1.51 4.97 -90.62 -0.45 -1.96 16 22 C -0.18 -1.94 10.02 -26.74 -0.27 -2.21 16 23 C -0.18 -1.63 10.25 -26.73 -0.27 -1.90 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.50 6.28 -51.93 -0.33 0.17 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 30 H 0.08 0.83 6.60 -51.93 -0.34 0.49 16 31 H 0.09 1.40 6.82 -51.93 -0.35 1.05 16 32 H 0.04 0.66 8.03 -51.93 -0.42 0.24 16 33 H 0.08 1.14 6.13 -51.93 -0.32 0.82 16 34 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 37 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 38 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 39 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.08 0.74 5.94 -51.93 -0.31 0.43 16 42 H 0.03 0.40 7.79 -51.93 -0.40 -0.01 16 43 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -32.61 375.47 -9.61 -42.21 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.64 Total: -1.39 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.87 Total: -2.51 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.82 Total: -47.22 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.61 -9.61 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042490270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.402 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds