Wall clock time and date at job start Tue Mar 31 2020 06:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 N 1.46908 * 109.47402 * 180.02562 * 3 2 1 5 5 C 1.46897 * 111.00358 * 190.00321 * 4 3 2 6 6 C 1.52996 * 109.47115 * 73.86775 * 5 4 3 7 7 C 1.50707 * 109.47206 * 174.85160 * 6 5 4 8 8 O 1.21275 * 119.99366 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00167 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00084 * 0.02562 * 9 7 6 11 11 C 1.46495 * 119.99974 * 179.97438 * 9 7 6 12 12 C 1.50704 * 109.46793 * 90.00377 * 11 9 7 13 13 H 1.07998 * 120.00054 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99971 * 179.97438 * 12 11 9 15 15 N 1.31514 * 120.00098 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99939 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46970 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46998 * 120.00458 * 16 14 12 19 19 H 1.48498 * 109.47134 * 240.00343 * 16 14 12 20 20 C 1.46900 * 110.99749 * 66.04515 * 4 3 2 21 21 C 1.53003 * 109.47054 * 195.83454 * 20 4 3 22 22 C 1.52990 * 117.49831 * 243.79561 * 21 20 4 23 23 C 1.52995 * 60.00309 * 252.51086 * 22 21 20 24 24 H 1.08999 * 109.46963 * 59.99834 * 1 2 3 25 25 H 1.08993 * 109.46917 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46737 * 300.00124 * 1 2 3 27 27 H 1.09002 * 109.47473 * 240.00427 * 2 1 3 28 28 H 1.09002 * 109.47415 * 120.00400 * 2 1 3 29 29 H 1.08999 * 109.47303 * 299.99957 * 3 2 1 30 30 H 1.09003 * 109.46952 * 60.00543 * 3 2 1 31 31 H 1.08995 * 109.47234 * 193.87331 * 5 4 3 32 32 H 1.09002 * 109.46961 * 313.87689 * 5 4 3 33 33 H 1.08997 * 109.47913 * 294.85708 * 6 5 4 34 34 H 1.09005 * 109.46939 * 54.85648 * 6 5 4 35 35 H 1.09000 * 109.47410 * 89.99620 * 10 9 7 36 36 H 1.09002 * 109.46772 * 209.99971 * 10 9 7 37 37 H 1.09003 * 109.46492 * 329.99458 * 10 9 7 38 38 H 1.08999 * 109.47420 * 209.99969 * 11 9 7 39 39 H 1.09001 * 109.47603 * 330.00664 * 11 9 7 40 40 H 0.97003 * 119.99861 * 179.97438 * 15 14 12 41 41 H 1.08995 * 109.47291 * 315.83463 * 20 4 3 42 42 H 1.08998 * 109.46855 * 75.84004 * 20 4 3 43 43 H 1.09003 * 115.54657 * 29.50924 * 21 20 4 44 44 H 1.08998 * 117.50065 * 0.02562 * 22 21 20 45 45 H 1.09001 * 117.50067 * 145.02230 * 22 21 20 46 46 H 1.09003 * 117.50284 * 252.51479 * 23 22 21 47 47 H 1.08997 * 117.49860 * 107.48666 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0357 2.7931 0.2376 6 6 3.8449 3.1625 1.7100 7 6 4.4970 4.4935 1.9825 8 8 5.0586 5.0882 1.0871 9 7 4.4562 5.0229 3.2212 10 6 3.7783 4.3042 4.3030 11 6 5.0906 6.3165 3.4863 12 6 4.0931 7.4220 3.2542 13 1 3.0871 7.1847 2.9411 14 6 4.4645 8.7364 3.4427 15 7 5.6893 9.0254 3.8245 16 14 3.2282 10.1069 3.1543 17 1 1.9300 9.5218 2.7327 18 1 3.0395 10.8757 4.4107 19 1 3.7322 11.0124 2.0908 20 6 4.0350 0.8859 -1.2542 21 6 5.5134 0.5348 -1.0758 22 6 6.5288 1.2994 -1.9273 23 6 6.2185 -0.1660 -2.2388 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 5.0971 2.8178 -0.0087 32 1 3.5006 3.5072 -0.3884 33 1 2.7801 3.2270 1.9335 34 1 4.3023 2.3983 2.3385 35 1 4.4893 3.6477 4.8046 36 1 3.3771 5.0208 5.0198 37 1 2.9639 3.7093 3.8894 38 1 5.4336 6.3479 4.5204 39 1 5.9410 6.4481 2.8172 40 1 5.9507 9.9501 3.9567 41 1 3.4769 -0.0133 -1.5148 42 1 3.9301 1.6224 -2.0509 43 1 5.8118 0.2564 -0.0650 44 1 6.1437 2.0529 -2.6143 45 1 7.4956 1.5243 -1.4768 46 1 6.9810 -0.9052 -1.9932 47 1 5.6290 -0.3769 -3.1311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042490270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:48 Heat of formation + Delta-G solvation = -39.763240 kcal Electronic energy + Delta-G solvation = -22662.774137 eV Core-core repulsion = 19459.215758 eV Total energy + Delta-G solvation = -3203.558379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.77540 -39.51522 -37.35292 -36.58323 -34.77985 -34.29436 -32.05171 -29.71018 -28.08103 -27.35632 -26.42789 -24.63561 -23.23733 -22.74213 -21.94951 -21.07951 -19.90904 -18.71294 -17.97560 -17.20360 -16.88927 -16.74912 -16.24147 -16.17306 -15.78852 -15.39726 -15.00354 -14.79416 -14.36493 -14.09445 -13.78664 -13.63261 -13.49800 -13.45471 -13.23786 -13.17832 -12.79793 -12.77463 -12.49306 -12.46126 -12.37932 -12.22467 -12.20308 -11.96541 -11.70683 -11.67770 -11.46785 -11.11975 -10.73461 -10.66225 -10.58108 -9.41327 -9.34919 -8.23582 -6.38763 1.35032 1.37486 1.49390 1.85558 2.28155 2.41389 2.82820 3.02018 3.05771 3.77809 3.88160 3.93668 3.99208 4.09847 4.12964 4.17035 4.33171 4.42113 4.44792 4.55417 4.58759 4.64123 4.71895 4.73384 4.78224 4.79893 4.89413 4.93511 4.95967 4.98571 5.02919 5.04944 5.09756 5.22964 5.24187 5.26085 5.34043 5.40480 5.48436 5.55835 5.84405 6.04984 6.05654 6.16705 6.68983 6.80074 7.27278 7.49507 8.83686 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.003682 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.232611 B = 7602.804931 C = 8419.895922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.047 3.953 4 N -0.532 5.532 5 C 0.081 3.919 6 C -0.112 4.112 7 C 0.494 3.506 8 O -0.601 6.601 9 N -0.612 5.612 10 C 0.079 3.921 11 C 0.258 3.742 12 C -0.542 4.542 13 H 0.053 0.947 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.969 3.031 17 H -0.267 1.267 18 H -0.267 1.267 19 H -0.282 1.282 20 C 0.085 3.915 21 C -0.150 4.150 22 C -0.201 4.201 23 C -0.159 4.159 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.018 0.982 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.023 0.977 39 H -0.004 1.004 40 H 0.267 0.733 41 H 0.099 0.901 42 H 0.025 0.975 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 -22.360 -6.756 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.080 4.080 4 N -0.255 5.255 5 C -0.048 4.048 6 C -0.152 4.152 7 C 0.283 3.717 8 O -0.483 6.483 9 N -0.343 5.343 10 C -0.063 4.063 11 C 0.136 3.864 12 C -0.581 4.581 13 H 0.071 0.929 14 C -0.193 4.193 15 N -0.569 5.569 16 Si 0.793 3.207 17 H -0.191 1.191 18 H -0.193 1.193 19 H -0.208 1.208 20 C -0.043 4.043 21 C -0.168 4.168 22 C -0.238 4.238 23 C -0.196 4.196 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.125 0.875 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.041 0.959 39 H 0.014 0.986 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.043 0.957 43 H 0.124 0.876 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.124 0.876 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.603 -22.213 -6.747 24.428 hybrid contribution -0.234 1.978 -0.694 2.109 sum -7.837 -20.235 -7.440 22.939 Atomic orbital electron populations 1.21733 0.94911 1.02306 1.01863 1.21502 0.95869 0.94896 1.02809 1.22328 0.86299 0.98503 1.00915 1.61981 1.08117 1.20512 1.34934 1.21607 1.00221 0.88499 0.94428 1.21521 1.02430 0.92601 0.98667 1.21401 0.80190 0.88302 0.81827 1.90626 1.47409 1.64877 1.45424 1.48201 1.54720 1.21296 1.10062 1.21932 0.97642 0.96814 0.89906 1.18748 0.92581 0.80057 0.94967 1.21740 0.97998 0.92172 1.46199 0.92892 1.25892 0.97461 1.01368 0.94580 1.70063 1.19294 1.19937 1.47587 0.85345 0.78754 0.78395 0.78168 1.19097 1.19251 1.20757 1.21756 0.93720 0.99355 0.89446 1.22270 0.92836 1.04764 0.96945 1.23060 1.00738 0.95794 1.04212 1.23013 1.03043 0.94336 0.99204 0.93059 0.91596 0.92524 0.91648 0.90975 0.95539 0.90383 0.91520 0.96336 0.87464 0.86346 0.91142 0.91626 0.88738 0.95893 0.98594 0.92381 0.88324 0.95680 0.87609 0.89840 0.89437 0.87631 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.14 16 2 C -0.11 -1.62 5.90 30.59 0.18 -1.44 16 3 C 0.05 0.89 4.80 86.30 0.41 1.30 16 4 N -0.53 -11.73 4.41 -896.23 -3.95 -15.68 16 5 C 0.08 2.37 4.17 86.30 0.36 2.73 16 6 C -0.11 -3.24 4.25 29.85 0.13 -3.12 16 7 C 0.49 21.12 7.67 87.66 0.67 21.79 16 8 O -0.60 -32.18 15.50 -3.01 -0.05 -32.23 16 9 N -0.61 -26.66 2.86 -851.12 -2.43 -29.09 16 10 C 0.08 2.39 10.24 127.77 1.31 3.70 16 11 C 0.26 14.34 5.16 85.64 0.44 14.79 16 12 C -0.54 -32.01 9.39 25.60 0.24 -31.77 16 13 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 14 C 0.01 0.34 5.46 84.66 0.46 0.80 16 15 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 16 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 C 0.08 1.69 5.12 86.30 0.44 2.14 16 21 C -0.15 -3.02 4.97 -10.80 -0.05 -3.08 16 22 C -0.20 -4.34 10.02 30.59 0.31 -4.03 16 23 C -0.16 -2.59 10.25 30.59 0.31 -2.27 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.88 6.28 -2.39 -0.01 0.87 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.03 0.53 8.12 -2.39 -0.02 0.51 16 30 H 0.08 1.46 6.60 -2.39 -0.02 1.45 16 31 H 0.07 2.22 6.82 -2.39 -0.02 2.21 16 32 H 0.02 0.61 8.03 -2.39 -0.02 0.59 16 33 H 0.11 2.62 6.13 -2.39 -0.01 2.61 16 34 H 0.12 2.88 8.11 -2.38 -0.02 2.86 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 37 H 0.09 2.15 6.44 -2.39 -0.02 2.14 16 38 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 39 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 40 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.10 1.59 5.94 -2.39 -0.01 1.58 16 42 H 0.02 0.56 7.79 -2.39 -0.02 0.54 16 43 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.08 1.92 8.03 -2.39 -0.02 1.90 16 45 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 46 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -73.83 375.47 2.72 -71.10 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.91 Total: 14.79 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.93 Total: 0.40 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -6.09 Total: -101.66 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.05 Total: -32.23 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.83 2.72 -71.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042490270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.340 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds