Wall clock time and date at job start Tue Mar 31 2020 06:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47154 * 2 1 4 4 N 1.46897 * 109.47014 * 119.99597 * 2 1 3 5 5 C 1.46900 * 111.00247 * 306.39155 * 4 2 1 6 6 C 1.50709 * 109.46935 * 287.20919 * 5 4 2 7 7 H 1.08000 * 119.99847 * 357.99369 * 6 5 4 8 8 C 1.37868 * 119.99889 * 177.99768 * 6 5 4 9 9 N 1.31512 * 120.00361 * 179.97438 * 8 6 5 10 10 Si 1.86808 * 120.00072 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46889 * 89.99900 * 10 8 6 12 12 H 1.48498 * 109.47211 * 210.00003 * 10 8 6 13 13 H 1.48494 * 109.47116 * 330.00357 * 10 8 6 14 14 C 1.46898 * 111.00029 * 70.34768 * 4 2 1 15 15 C 1.50693 * 109.47353 * 76.31125 * 14 4 2 16 16 O 1.21281 * 120.00460 * 357.44111 * 15 14 4 17 17 N 1.34774 * 120.00035 * 177.43682 * 15 14 4 18 18 C 1.44579 * 118.64454 * 359.73792 * 17 15 14 19 19 C 1.54308 * 109.90985 * 270.85216 * 18 17 15 20 20 C 1.47097 * 110.29470 * 288.76027 * 19 18 17 21 21 C 1.52566 * 114.32682 * 62.72872 * 20 19 18 22 22 C 1.50877 * 109.35538 * 274.98055 * 21 20 19 23 23 C 1.47612 * 118.64696 * 180.02562 * 17 15 14 24 24 H 1.08999 * 109.46991 * 308.11778 * 1 2 3 25 25 H 1.09002 * 109.46965 * 68.11835 * 1 2 3 26 26 H 1.08993 * 109.46971 * 188.11878 * 1 2 3 27 27 H 1.08997 * 109.47397 * 239.99820 * 2 1 3 28 28 H 1.08992 * 109.47571 * 171.60013 * 3 2 1 29 29 H 1.09003 * 109.46977 * 291.60208 * 3 2 1 30 30 H 1.08999 * 109.47264 * 51.59544 * 3 2 1 31 31 H 1.09000 * 109.47109 * 47.20506 * 5 4 2 32 32 H 1.09001 * 109.47115 * 167.21589 * 5 4 2 33 33 H 0.97003 * 120.00496 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.46936 * 316.30829 * 14 4 2 35 35 H 1.09002 * 109.47302 * 196.31730 * 14 4 2 36 36 H 1.08995 * 109.44877 * 30.76158 * 18 17 15 37 37 H 1.09000 * 109.44995 * 150.67767 * 18 17 15 38 38 H 1.08991 * 109.40281 * 168.46533 * 19 18 17 39 39 H 1.09003 * 109.27957 * 48.96945 * 19 18 17 40 40 H 1.09003 * 108.50969 * 301.47616 * 20 19 18 41 41 H 1.09003 * 108.51268 * 183.98458 * 20 19 18 42 42 H 1.09005 * 109.48875 * 155.01701 * 21 20 19 43 43 H 1.08993 * 109.49232 * 34.94999 * 21 20 19 44 44 H 1.09004 * 109.36873 * 331.69749 * 22 21 20 45 45 H 1.09005 * 109.36945 * 212.08111 * 22 21 20 46 46 H 1.09004 * 108.94852 * 258.55936 * 23 17 15 47 47 H 1.09000 * 108.94212 * 17.26737 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4280 -0.1201 2.4162 6 6 2.0407 1.2303 2.6854 7 1 2.8173 1.6097 2.0378 8 6 1.6100 1.9811 3.7584 9 7 2.1450 3.1593 3.9938 10 14 0.2664 1.3251 4.8783 11 1 0.8802 0.5490 5.9856 12 1 -0.5084 2.4607 5.4397 13 1 -0.6405 0.4439 4.0997 14 6 1.7603 -2.1359 1.1168 15 6 2.7544 -2.7721 0.1798 16 8 3.5665 -2.0839 -0.4012 17 7 2.7411 -4.1060 -0.0124 18 6 1.7642 -4.8992 0.6996 19 6 2.3365 -5.3369 2.0642 20 6 3.3841 -6.3522 1.8761 21 6 4.5995 -5.8638 1.0939 22 6 4.3314 -6.0019 -0.3844 23 6 3.7286 -4.6977 -0.9363 24 1 -0.3633 0.6344 0.8085 25 1 -0.3633 0.3830 -0.9536 26 1 -0.3633 -1.0173 0.1451 27 1 1.8934 -0.5138 -0.8899 28 1 3.1196 1.4463 0.1501 29 1 1.8045 1.9112 -0.9555 30 1 1.5593 1.9979 0.8053 31 1 0.3522 -0.0102 2.2800 32 1 1.6219 -0.7818 3.2604 33 1 1.8417 3.6877 4.7485 34 1 0.7501 -2.3027 0.7427 35 1 1.8587 -2.5801 2.1073 36 1 0.8642 -4.3063 0.8621 37 1 1.5152 -5.7823 0.1112 38 1 1.5361 -5.7533 2.6757 39 1 2.7609 -4.4703 2.5712 40 1 2.9514 -7.2021 1.3481 41 1 3.7172 -6.6917 2.8569 42 1 5.4698 -6.4624 1.3631 43 1 4.7894 -4.8175 1.3329 44 1 3.6324 -6.8218 -0.5500 45 1 5.2660 -6.2159 -0.9029 46 1 3.2410 -4.9085 -1.8881 47 1 4.5323 -3.9803 -1.1020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:08 Heat of formation + Delta-G solvation = -22.815999 kcal Electronic energy + Delta-G solvation = -24133.352713 eV Core-core repulsion = 20930.529222 eV Total energy + Delta-G solvation = -3202.823491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29592 -38.07749 -36.86637 -33.83258 -32.96087 -32.45357 -31.06381 -28.76039 -27.01672 -26.36394 -25.75680 -24.74696 -21.89703 -21.62819 -20.57972 -19.07028 -18.35957 -17.01266 -16.84620 -16.17462 -15.70301 -15.30850 -14.63644 -14.47010 -14.32803 -13.98592 -13.80285 -13.50101 -13.16342 -13.04311 -12.73488 -12.44693 -12.31319 -12.13482 -11.67401 -11.58266 -11.43707 -11.20355 -11.06871 -10.89996 -10.82515 -10.78442 -10.62364 -10.56439 -10.53163 -10.20310 -9.95626 -9.81769 -9.18968 -8.88689 -8.52068 -8.44521 -7.24534 -5.98221 -3.92006 2.97115 3.11173 3.29054 3.36735 3.37472 4.43476 4.45304 4.64778 4.71733 4.78488 4.84455 4.96807 4.99678 5.21844 5.30461 5.33805 5.43546 5.50752 5.57572 5.60963 5.67252 5.73056 5.80022 5.82548 5.91042 5.96412 5.97548 6.01048 6.03994 6.11873 6.25513 6.34609 6.52739 6.63901 6.69513 6.73128 6.93207 6.97670 7.25468 7.47773 7.62432 7.70822 7.98525 8.12656 8.57081 8.73396 9.15228 9.62346 11.13698 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020568 B = 0.004956 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.012545 B = 5648.305625 C = 6259.642749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.094 3.906 3 C -0.141 4.141 4 N -0.504 5.504 5 C 0.155 3.845 6 C -0.503 4.503 7 H 0.097 0.903 8 C 0.067 3.933 9 N -0.900 5.900 10 Si 0.867 3.133 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.032 3.968 15 C 0.512 3.488 16 O -0.514 6.514 17 N -0.616 5.616 18 C 0.113 3.887 19 C -0.144 4.144 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.129 4.129 23 C 0.113 3.887 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.026 0.974 30 H 0.098 0.902 31 H 0.001 0.999 32 H 0.018 0.982 33 H 0.262 0.738 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 -20.166 -7.231 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.014 4.014 3 C -0.198 4.198 4 N -0.228 5.228 5 C 0.030 3.970 6 C -0.541 4.541 7 H 0.115 0.885 8 C -0.134 4.134 9 N -0.540 5.540 10 Si 0.694 3.306 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.194 1.194 14 C -0.100 4.100 15 C 0.300 3.700 16 O -0.387 6.387 17 N -0.352 5.352 18 C -0.011 4.011 19 C -0.182 4.182 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.167 4.167 23 C -0.009 4.009 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.117 0.883 31 H 0.019 0.981 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.963 -19.555 -7.404 20.932 hybrid contribution -1.672 -0.660 0.821 1.976 sum -2.636 -20.215 -6.584 21.423 Atomic orbital electron populations 1.22507 0.99246 1.00643 1.02005 1.21486 0.90997 0.96614 0.92315 1.22202 1.02305 0.94651 1.00658 1.61893 1.59176 0.98107 1.03588 1.20360 0.93555 0.96428 0.86702 1.21339 1.21391 0.99227 1.12174 0.88488 1.24885 0.96415 0.94954 0.97154 1.69882 1.42872 1.11502 1.29727 0.86996 0.83014 0.78811 0.81732 1.20360 1.21345 1.19354 1.22087 0.95745 0.93133 0.99025 1.21031 0.85396 0.81297 0.82302 1.90663 1.38509 1.61597 1.47948 1.47763 1.34549 1.06843 1.46003 1.21415 0.91191 0.96015 0.92518 1.21255 0.99115 1.00172 0.97673 1.20417 0.95892 0.98450 1.00412 1.21071 0.97544 1.02391 0.94604 1.21750 1.00946 0.97235 0.96766 1.21720 0.92604 0.95398 0.91191 0.91193 0.93139 0.94103 0.91672 0.92360 0.95536 0.88326 0.98142 0.96420 0.92785 0.92607 0.88820 0.90393 0.90784 0.90829 0.91192 0.92505 0.92525 0.92096 0.91235 0.91853 0.90946 0.92540 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 8.33 37.16 0.31 -3.00 16 2 C 0.09 1.92 2.62 -67.71 -0.18 1.74 16 3 C -0.14 -3.09 7.68 37.16 0.29 -2.80 16 4 N -0.50 -10.82 4.06 -229.51 -0.93 -11.76 16 5 C 0.16 3.67 3.55 -4.97 -0.02 3.66 16 6 C -0.50 -13.92 7.23 -34.44 -0.25 -14.17 16 7 H 0.10 2.93 5.59 -52.49 -0.29 2.64 16 8 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 10 Si 0.87 21.05 27.51 -169.99 -4.68 16.37 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.21 6.48 56.52 0.37 -5.85 16 14 C 0.03 0.54 3.83 -4.98 -0.02 0.52 16 15 C 0.51 8.63 7.33 -10.99 -0.08 8.54 16 16 O -0.51 -10.71 14.44 5.56 0.08 -10.63 16 17 N -0.62 -7.77 2.25 -172.92 -0.39 -8.16 16 18 C 0.11 1.09 5.10 -4.38 -0.02 1.07 16 19 C -0.14 -1.33 5.57 -28.88 -0.16 -1.49 16 20 C -0.11 -0.98 5.15 -29.79 -0.15 -1.13 16 21 C -0.12 -1.13 5.51 -28.02 -0.15 -1.29 16 22 C -0.13 -1.11 5.71 -27.32 -0.16 -1.27 16 23 C 0.11 1.27 6.10 -2.96 -0.02 1.25 16 24 H 0.07 1.38 6.49 -51.93 -0.34 1.04 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.66 6.25 -51.93 -0.32 0.33 16 27 H 0.07 1.33 6.68 -51.93 -0.35 0.98 16 28 H 0.06 1.38 7.45 -51.93 -0.39 0.99 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 2.42 5.46 -51.93 -0.28 2.14 16 31 H 0.00 0.02 4.61 -51.93 -0.24 -0.22 16 32 H 0.02 0.42 7.19 -51.93 -0.37 0.05 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.06 0.86 5.40 -51.93 -0.28 0.57 16 35 H 0.09 1.50 6.44 -51.93 -0.33 1.16 16 36 H 0.08 0.73 6.32 -51.93 -0.33 0.40 16 37 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.80 7.25 -51.93 -0.38 0.42 16 40 H 0.06 0.42 7.36 -51.93 -0.38 0.04 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.86 7.48 -51.93 -0.39 0.47 16 44 H 0.06 0.47 7.32 -51.93 -0.38 0.09 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 1.20 6.96 -51.93 -0.36 0.84 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -31.83 339.71 -8.70 -40.53 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.96 Total: 1.58 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -0.71 Total: -6.57 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.55 Total: -46.40 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.68 Total: 16.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.83 -8.70 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.710 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds