Wall clock time and date at job start Tue Mar 31 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47154 * 2 1 4 4 N 1.46897 * 109.47014 * 119.99597 * 2 1 3 5 5 C 1.46900 * 111.00247 * 306.39155 * 4 2 1 6 6 C 1.50709 * 109.46935 * 287.20919 * 5 4 2 7 7 H 1.08000 * 119.99847 * 357.99369 * 6 5 4 8 8 C 1.37868 * 119.99889 * 177.99768 * 6 5 4 9 9 N 1.31512 * 120.00361 * 179.97438 * 8 6 5 10 10 Si 1.86808 * 120.00072 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46889 * 89.99900 * 10 8 6 12 12 H 1.48498 * 109.47211 * 210.00003 * 10 8 6 13 13 H 1.48494 * 109.47116 * 330.00357 * 10 8 6 14 14 C 1.46898 * 111.00029 * 70.34768 * 4 2 1 15 15 C 1.50693 * 109.47353 * 76.31125 * 14 4 2 16 16 O 1.21281 * 120.00460 * 357.44111 * 15 14 4 17 17 N 1.34774 * 120.00035 * 177.43682 * 15 14 4 18 18 C 1.44579 * 118.64454 * 359.73792 * 17 15 14 19 19 C 1.54308 * 109.90985 * 270.85216 * 18 17 15 20 20 C 1.47097 * 110.29470 * 288.76027 * 19 18 17 21 21 C 1.52566 * 114.32682 * 62.72872 * 20 19 18 22 22 C 1.50877 * 109.35538 * 274.98055 * 21 20 19 23 23 C 1.47612 * 118.64696 * 180.02562 * 17 15 14 24 24 H 1.08999 * 109.46991 * 308.11778 * 1 2 3 25 25 H 1.09002 * 109.46965 * 68.11835 * 1 2 3 26 26 H 1.08993 * 109.46971 * 188.11878 * 1 2 3 27 27 H 1.08997 * 109.47397 * 239.99820 * 2 1 3 28 28 H 1.08992 * 109.47571 * 171.60013 * 3 2 1 29 29 H 1.09003 * 109.46977 * 291.60208 * 3 2 1 30 30 H 1.08999 * 109.47264 * 51.59544 * 3 2 1 31 31 H 1.09000 * 109.47109 * 47.20506 * 5 4 2 32 32 H 1.09001 * 109.47115 * 167.21589 * 5 4 2 33 33 H 0.97003 * 120.00496 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.46936 * 316.30829 * 14 4 2 35 35 H 1.09002 * 109.47302 * 196.31730 * 14 4 2 36 36 H 1.08995 * 109.44877 * 30.76158 * 18 17 15 37 37 H 1.09000 * 109.44995 * 150.67767 * 18 17 15 38 38 H 1.08991 * 109.40281 * 168.46533 * 19 18 17 39 39 H 1.09003 * 109.27957 * 48.96945 * 19 18 17 40 40 H 1.09003 * 108.50969 * 301.47616 * 20 19 18 41 41 H 1.09003 * 108.51268 * 183.98458 * 20 19 18 42 42 H 1.09005 * 109.48875 * 155.01701 * 21 20 19 43 43 H 1.08993 * 109.49232 * 34.94999 * 21 20 19 44 44 H 1.09004 * 109.36873 * 331.69749 * 22 21 20 45 45 H 1.09005 * 109.36945 * 212.08111 * 22 21 20 46 46 H 1.09004 * 108.94852 * 258.55936 * 23 17 15 47 47 H 1.09000 * 108.94212 * 17.26737 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4280 -0.1201 2.4162 6 6 2.0407 1.2303 2.6854 7 1 2.8173 1.6097 2.0378 8 6 1.6100 1.9811 3.7584 9 7 2.1450 3.1593 3.9938 10 14 0.2664 1.3251 4.8783 11 1 0.8802 0.5490 5.9856 12 1 -0.5084 2.4607 5.4397 13 1 -0.6405 0.4439 4.0997 14 6 1.7603 -2.1359 1.1168 15 6 2.7544 -2.7721 0.1798 16 8 3.5665 -2.0839 -0.4012 17 7 2.7411 -4.1060 -0.0124 18 6 1.7642 -4.8992 0.6996 19 6 2.3365 -5.3369 2.0642 20 6 3.3841 -6.3522 1.8761 21 6 4.5995 -5.8638 1.0939 22 6 4.3314 -6.0019 -0.3844 23 6 3.7286 -4.6977 -0.9363 24 1 -0.3633 0.6344 0.8085 25 1 -0.3633 0.3830 -0.9536 26 1 -0.3633 -1.0173 0.1451 27 1 1.8934 -0.5138 -0.8899 28 1 3.1196 1.4463 0.1501 29 1 1.8045 1.9112 -0.9555 30 1 1.5593 1.9979 0.8053 31 1 0.3522 -0.0102 2.2800 32 1 1.6219 -0.7818 3.2604 33 1 1.8417 3.6877 4.7485 34 1 0.7501 -2.3027 0.7427 35 1 1.8587 -2.5801 2.1073 36 1 0.8642 -4.3063 0.8621 37 1 1.5152 -5.7823 0.1112 38 1 1.5361 -5.7533 2.6757 39 1 2.7609 -4.4703 2.5712 40 1 2.9514 -7.2021 1.3481 41 1 3.7172 -6.6917 2.8569 42 1 5.4698 -6.4624 1.3631 43 1 4.7894 -4.8175 1.3329 44 1 3.6324 -6.8218 -0.5500 45 1 5.2660 -6.2159 -0.9029 46 1 3.2410 -4.9085 -1.8881 47 1 4.5323 -3.9803 -1.1020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:07 Heat of formation + Delta-G solvation = -43.552704 kcal Electronic energy + Delta-G solvation = -24134.251924 eV Core-core repulsion = 20930.529222 eV Total energy + Delta-G solvation = -3203.722702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43996 -39.41979 -38.17739 -34.82908 -34.61198 -33.75268 -32.60153 -30.57092 -28.18324 -27.91147 -26.85557 -25.88512 -23.78824 -22.65542 -21.33965 -20.53300 -19.66755 -18.82587 -18.16570 -17.27086 -16.98424 -16.61011 -16.24291 -15.79576 -15.40082 -15.21908 -15.06769 -14.83406 -14.54494 -14.17350 -14.08489 -13.91557 -13.40458 -13.30515 -13.15394 -13.03542 -12.88063 -12.59199 -12.48200 -12.45351 -12.33728 -11.96113 -11.79664 -11.78967 -11.57792 -11.52790 -11.48955 -11.26997 -10.94584 -10.63626 -10.57613 -9.54628 -8.85683 -8.15880 -6.14666 1.38329 1.39378 1.49166 1.70602 2.04691 2.41372 3.14966 3.24266 3.61533 3.88864 3.95011 4.02111 4.07828 4.15189 4.19982 4.24107 4.29758 4.40021 4.45519 4.56443 4.64532 4.72770 4.73603 4.78994 4.86102 4.87955 4.94876 4.99464 5.02987 5.05796 5.16705 5.20496 5.24322 5.28641 5.29100 5.40202 5.50292 5.51474 5.64364 5.73271 5.78385 6.08561 6.39212 6.51356 6.76520 6.91377 7.33961 7.43637 8.99558 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020568 B = 0.004956 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.012545 B = 5648.305625 C = 6259.642749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.097 3.903 3 C -0.130 4.130 4 N -0.533 5.533 5 C 0.167 3.833 6 C -0.503 4.503 7 H 0.054 0.946 8 C 0.005 3.995 9 N -0.953 5.953 10 Si 0.938 3.062 11 H -0.271 1.271 12 H -0.288 1.288 13 H -0.243 1.243 14 C 0.034 3.966 15 C 0.509 3.491 16 O -0.568 6.568 17 N -0.603 5.603 18 C 0.104 3.896 19 C -0.141 4.141 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.119 4.119 23 C 0.109 3.891 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.012 0.988 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.031 0.969 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 -24.087 -7.456 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.012 4.012 3 C -0.188 4.188 4 N -0.257 5.257 5 C 0.040 3.960 6 C -0.541 4.541 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.594 5.594 10 Si 0.762 3.238 11 H -0.196 1.196 12 H -0.214 1.214 13 H -0.166 1.166 14 C -0.097 4.097 15 C 0.297 3.703 16 O -0.446 6.446 17 N -0.337 5.337 18 C -0.019 4.019 19 C -0.179 4.179 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.012 4.012 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.594 -23.553 -7.641 25.021 hybrid contribution -0.737 0.531 0.801 1.211 sum -4.331 -23.023 -6.839 24.405 Atomic orbital electron populations 1.22381 0.96687 1.01857 1.02497 1.21423 0.92939 0.94848 0.91940 1.22013 0.99756 0.96385 1.00625 1.61670 1.60194 1.00757 1.03067 1.20114 0.93644 0.94212 0.88000 1.21548 1.20189 1.01180 1.11232 0.92809 1.25766 0.99262 0.95045 0.99019 1.70060 1.45205 1.13369 1.30808 0.85858 0.79976 0.78432 0.79566 1.19602 1.21441 1.16614 1.22135 0.97239 0.90252 1.00058 1.21046 0.84772 0.82622 0.81882 1.90648 1.40533 1.63206 1.50167 1.47793 1.34766 1.05676 1.45435 1.21743 0.90465 0.96802 0.92851 1.21248 0.99911 0.99349 0.97433 1.20426 0.95182 0.98856 1.00691 1.21083 0.98813 1.00230 0.95654 1.21720 1.01915 0.96222 0.95862 1.21851 0.91721 0.95739 0.91938 0.93137 0.90953 0.91674 0.91600 0.95735 0.93130 0.91423 0.97039 0.95866 0.92851 0.89823 0.87719 0.89596 0.87743 0.88522 0.94062 0.90149 0.92338 0.91180 0.94976 0.89293 0.89908 0.90839 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.87 8.33 71.98 0.60 -5.27 16 2 C 0.10 3.92 2.62 44.92 0.12 4.03 16 3 C -0.13 -5.96 7.68 71.98 0.55 -5.41 16 4 N -0.53 -22.89 4.06 -880.05 -3.57 -26.46 16 5 C 0.17 7.80 3.55 85.56 0.30 8.11 16 6 C -0.50 -28.80 7.23 25.60 0.19 -28.62 16 7 H 0.05 3.48 5.59 -2.91 -0.02 3.46 16 8 C 0.01 0.30 5.47 84.65 0.46 0.76 16 9 N -0.95 -60.03 13.96 21.44 0.30 -59.73 16 10 Si 0.94 43.29 27.51 68.60 1.89 45.18 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.24 -10.11 6.48 99.48 0.65 -9.46 16 14 C 0.03 1.11 3.83 85.56 0.33 1.44 16 15 C 0.51 16.88 7.33 87.66 0.64 17.53 16 16 O -0.57 -24.41 14.44 -3.03 -0.04 -24.46 16 17 N -0.60 -14.13 2.25 -819.38 -1.85 -15.98 16 18 C 0.10 1.62 5.10 87.18 0.44 2.06 16 19 C -0.14 -2.18 5.57 29.20 0.16 -2.01 16 20 C -0.11 -1.59 5.15 28.61 0.15 -1.44 16 21 C -0.12 -2.09 5.51 29.76 0.16 -1.93 16 22 C -0.12 -1.74 5.71 30.21 0.17 -1.56 16 23 C 0.11 2.30 6.10 86.47 0.53 2.82 16 24 H 0.05 1.89 6.49 -2.39 -0.02 1.88 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.06 1.84 6.25 -2.39 -0.01 1.83 16 27 H 0.07 2.68 6.68 -2.39 -0.02 2.66 16 28 H 0.02 1.23 7.45 -2.39 -0.02 1.21 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 3.50 5.46 -2.39 -0.01 3.49 16 31 H 0.01 0.54 4.61 -2.39 -0.01 0.53 16 32 H 0.02 1.06 7.19 -2.39 -0.02 1.05 16 33 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.08 2.25 5.40 -2.38 -0.01 2.24 16 35 H 0.10 3.15 6.44 -2.39 -0.02 3.13 16 36 H 0.09 1.23 6.32 -2.39 -0.02 1.22 16 37 H 0.10 1.07 8.06 -2.39 -0.02 1.05 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.04 0.88 7.25 -2.39 -0.02 0.86 16 40 H 0.08 0.79 7.36 -2.39 -0.02 0.77 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.03 0.80 7.48 -2.39 -0.02 0.78 16 44 H 0.09 0.90 7.32 -2.39 -0.02 0.88 16 45 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.06 1.57 6.96 -2.39 -0.02 1.56 16 Total: -1.00 -74.18 339.71 2.42 -71.76 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.88 Total: 19.17 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 4.81 Total: -9.49 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -5.12 Total: -102.17 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.04 Total: -24.46 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.89 Total: 45.18 kcal Total: -74.18 2.42 -71.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.210 kcal (2) G-P(sol) polarization free energy of solvation -74.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds