Wall clock time and date at job start Tue Mar 31 2020 06:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47502 * 2 1 4 4 N 1.46907 * 109.46810 * 239.99860 * 2 1 3 5 5 C 1.46895 * 110.99798 * 69.75986 * 4 2 1 6 6 C 1.53001 * 109.47252 * 195.86950 * 5 4 2 7 7 C 1.50696 * 109.47602 * 174.79740 * 6 5 4 8 8 O 1.21288 * 119.99792 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00250 * 179.97438 * 7 6 5 10 10 C 1.46490 * 120.00072 * 0.02562 * 9 7 6 11 11 C 1.46507 * 119.99901 * 180.02562 * 9 7 6 12 12 C 1.50690 * 109.47191 * 89.99879 * 11 9 7 13 13 H 1.07996 * 120.00275 * 359.97438 * 12 11 9 14 14 C 1.37886 * 120.00028 * 179.97438 * 12 11 9 15 15 N 1.31514 * 119.99366 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00240 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47396 * 89.99689 * 16 14 12 18 18 H 1.48502 * 109.47286 * 210.00390 * 16 14 12 19 19 H 1.48501 * 109.47211 * 330.00029 * 16 14 12 20 20 C 1.46903 * 110.99857 * 193.71278 * 4 2 1 21 21 C 1.52993 * 109.47172 * 66.04757 * 20 4 2 22 22 C 1.52998 * 117.49960 * 243.62421 * 21 20 4 23 23 C 1.52997 * 117.49928 * 174.99877 * 21 20 4 24 24 H 1.08993 * 109.47341 * 183.40080 * 1 2 3 25 25 H 1.09001 * 109.46925 * 303.40448 * 1 2 3 26 26 H 1.08999 * 109.46979 * 63.39960 * 1 2 3 27 27 H 1.08999 * 109.47030 * 120.00365 * 2 1 3 28 28 H 1.08999 * 109.47277 * 300.00214 * 3 2 1 29 29 H 1.08998 * 109.46766 * 60.00274 * 3 2 1 30 30 H 1.09002 * 109.47217 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47580 * 315.87095 * 5 4 2 32 32 H 1.09003 * 109.47401 * 75.87205 * 5 4 2 33 33 H 1.08997 * 109.47384 * 294.80346 * 6 5 4 34 34 H 1.09000 * 109.46855 * 54.80240 * 6 5 4 35 35 H 1.08997 * 109.47347 * 89.99674 * 10 9 7 36 36 H 1.08997 * 109.47455 * 209.99786 * 10 9 7 37 37 H 1.09002 * 109.47058 * 329.99834 * 10 9 7 38 38 H 1.09003 * 109.46918 * 210.00490 * 11 9 7 39 39 H 1.09004 * 109.46796 * 329.99593 * 11 9 7 40 40 H 0.97002 * 119.99539 * 179.97438 * 15 14 12 41 41 H 1.09000 * 109.46616 * 186.04953 * 20 4 2 42 42 H 1.09002 * 109.46959 * 306.04585 * 20 4 2 43 43 H 1.09001 * 115.55122 * 29.32639 * 21 20 4 44 44 H 1.08994 * 117.50003 * 359.97438 * 22 21 20 45 45 H 1.09006 * 117.50173 * 145.02219 * 22 21 20 46 46 H 1.09004 * 117.50260 * 214.97926 * 23 21 20 47 47 H 1.09000 * 117.49944 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1995 5 6 1.7477 0.0945 -2.4096 6 6 1.8983 -0.7980 -3.6431 7 6 1.4961 -0.0266 -4.8736 8 8 1.1258 1.1240 -4.7739 9 7 1.5487 -0.6150 -6.0850 10 6 1.9963 -2.0046 -6.2055 11 6 1.1581 0.1352 -7.2813 12 6 2.3640 0.8378 -7.8496 13 1 3.3251 0.7361 -7.3677 14 6 2.2403 1.6105 -8.9848 15 7 1.0700 1.7338 -9.5719 16 14 3.7352 2.4809 -9.6897 17 1 4.4098 1.5915 -10.6691 18 1 3.3064 3.7300 -10.3687 19 1 4.6781 2.8131 -8.5916 20 6 3.4513 -1.0003 -1.0822 21 6 3.6637 -2.0196 0.0388 22 6 4.4847 -1.5756 1.2511 23 6 5.0803 -2.5603 0.2428 24 1 -0.3633 -1.0258 0.0610 25 1 -0.3633 0.5658 0.8579 26 1 -0.3633 0.4602 -0.9189 27 1 1.8933 -0.5139 0.8899 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 3.1301 1.4424 -0.0005 31 1 0.7318 0.4872 -2.3671 32 1 2.4547 0.9219 -2.4714 33 1 2.9366 -1.1161 -3.7370 34 1 1.2581 -1.6739 -3.5381 35 1 1.1383 -2.6714 -6.1210 36 1 2.4750 -2.1495 -7.1740 37 1 2.7089 -2.2270 -5.4112 38 1 0.7537 -0.5516 -8.0249 39 1 0.3995 0.8718 -7.0166 40 1 0.9829 2.2777 -10.3703 41 1 3.8120 -1.4148 -2.0235 42 1 4.0014 -0.0877 -0.8526 43 1 2.8335 -2.7034 0.2159 44 1 4.8738 -0.5575 1.2499 45 1 4.1947 -1.9673 2.2262 46 1 5.1822 -3.5999 0.5545 47 1 5.8610 -2.1896 -0.4213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042582925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:52 Heat of formation + Delta-G solvation = -14.329146 kcal Electronic energy + Delta-G solvation = -22953.824467 eV Core-core repulsion = 19751.368994 eV Total energy + Delta-G solvation = -3202.455473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.53638 -38.57549 -36.70432 -34.76028 -32.83805 -32.39075 -30.27209 -27.84022 -27.23156 -26.26886 -25.52931 -23.63646 -22.58630 -21.97816 -20.96163 -19.17163 -18.34134 -16.56262 -16.45759 -16.34941 -15.41905 -15.17249 -14.97691 -14.83153 -14.61922 -14.13587 -13.77738 -13.43307 -13.26853 -12.57835 -12.48328 -12.41065 -12.15052 -11.98806 -11.86551 -11.78605 -11.73090 -11.58968 -11.37858 -11.20269 -11.02849 -10.93384 -10.86543 -10.68020 -10.52939 -10.30998 -10.13777 -9.99923 -9.60336 -8.83750 -8.42093 -8.29630 -7.59338 -6.02693 -4.07301 3.30526 3.36937 3.40654 3.50690 3.54721 3.73267 4.16462 4.46501 4.57244 4.72735 4.79102 4.86187 5.02089 5.18697 5.24673 5.26225 5.29580 5.31964 5.41179 5.45190 5.46510 5.57564 5.63511 5.67295 5.70105 5.74714 5.79671 5.86895 5.89493 5.90902 5.97341 6.09874 6.13941 6.15765 6.25835 6.26566 6.32198 7.08412 7.10889 7.14529 7.47678 7.58467 7.94139 8.26054 8.47570 8.92675 9.15114 9.57716 11.05381 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020293 B = 0.003579 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.426214 B = 7822.155721 C = 8141.286078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.078 3.922 3 C -0.188 4.188 4 N -0.531 5.531 5 C 0.069 3.931 6 C -0.134 4.134 7 C 0.504 3.496 8 O -0.546 6.546 9 N -0.604 5.604 10 C 0.085 3.915 11 C 0.245 3.755 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.079 3.921 21 C -0.141 4.141 22 C -0.186 4.186 23 C -0.179 4.179 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.263 0.737 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.924 -9.266 20.280 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 C -0.247 4.247 4 N -0.255 5.255 5 C -0.059 4.059 6 C -0.174 4.174 7 C 0.290 3.710 8 O -0.425 6.425 9 N -0.336 5.336 10 C -0.060 4.060 11 C 0.125 3.875 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.049 4.049 21 C -0.159 4.159 22 C -0.223 4.223 23 C -0.217 4.217 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.130 0.870 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.366 -9.014 20.101 22.285 hybrid contribution 1.394 1.160 -0.490 1.879 sum 4.761 -7.854 19.610 21.655 Atomic orbital electron populations 1.21857 0.94425 1.02136 1.01846 1.21668 0.95712 0.92395 0.93243 1.22492 1.01181 0.98273 1.02726 1.62184 1.15422 1.45545 1.02341 1.21849 1.02668 0.93913 0.87468 1.21636 1.02852 0.99962 0.92989 1.20340 0.78872 0.87231 0.84511 1.90658 1.47907 1.17630 1.86285 1.48155 1.64515 1.12741 1.08183 1.21621 0.98624 0.83084 1.02635 1.19270 0.96384 0.91511 0.80285 1.21441 0.95214 1.29643 1.10121 0.92546 1.24944 0.96150 0.96337 0.96746 1.69936 1.22959 1.40122 1.20403 0.86499 0.82766 0.79152 0.79015 1.20635 1.21072 1.19947 1.21747 0.88768 0.96384 0.97985 1.22292 0.94778 1.01588 0.97253 1.23053 1.04979 0.99772 0.94522 1.22944 0.96612 0.99083 1.03058 0.92083 0.92606 0.92139 0.89939 0.91677 0.92328 0.92898 0.89529 0.93845 0.89917 0.88879 0.93756 0.90933 0.92433 0.95087 0.93883 0.92738 0.90212 0.94476 0.87035 0.89123 0.89071 0.88839 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.28 37.16 0.34 -1.13 16 2 C 0.08 0.81 2.79 -67.71 -0.19 0.62 16 3 C -0.19 -2.00 8.44 37.16 0.31 -1.69 16 4 N -0.53 -6.16 4.38 -226.65 -0.99 -7.15 16 5 C 0.07 0.99 2.92 -3.83 -0.01 0.98 16 6 C -0.13 -2.02 4.21 -27.88 -0.12 -2.14 16 7 C 0.50 10.60 7.67 -10.99 -0.08 10.51 16 8 O -0.55 -13.86 15.50 5.55 0.09 -13.77 16 9 N -0.60 -13.06 2.86 -182.96 -0.52 -13.58 16 10 C 0.08 1.36 10.24 59.84 0.61 1.98 16 11 C 0.24 6.53 5.16 -5.19 -0.03 6.51 16 12 C -0.53 -15.15 9.39 -34.44 -0.32 -15.47 16 13 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 16 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.08 0.83 4.99 -3.83 -0.02 0.81 16 21 C -0.14 -1.26 4.67 -90.63 -0.42 -1.68 16 22 C -0.19 -1.48 10.05 -26.73 -0.27 -1.74 16 23 C -0.18 -1.43 10.25 -26.73 -0.27 -1.70 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.70 6.33 -51.93 -0.33 0.37 16 27 H 0.08 0.80 6.82 -51.93 -0.35 0.44 16 28 H 0.06 0.81 6.64 -51.93 -0.34 0.46 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.56 6.74 -51.93 -0.35 0.21 16 31 H 0.09 1.36 5.89 -51.93 -0.31 1.05 16 32 H 0.04 0.69 7.15 -51.93 -0.37 0.32 16 33 H 0.08 1.13 6.05 -51.93 -0.31 0.82 16 34 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 37 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 38 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 39 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.08 0.87 6.49 -51.93 -0.34 0.53 16 42 H 0.04 0.41 6.33 -51.93 -0.33 0.08 16 43 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 0.73 8.03 -51.93 -0.42 0.31 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -32.38 368.25 -9.09 -41.47 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.36 Total: -0.89 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.56 Total: -2.49 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.78 Total: -46.93 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.38 -9.09 -41.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042582925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.137 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds