Wall clock time and date at job start Tue Mar 31 2020 06:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47502 * 2 1 4 4 N 1.46907 * 109.46810 * 239.99860 * 2 1 3 5 5 C 1.46895 * 110.99798 * 69.75986 * 4 2 1 6 6 C 1.53001 * 109.47252 * 195.86950 * 5 4 2 7 7 C 1.50696 * 109.47602 * 174.79740 * 6 5 4 8 8 O 1.21288 * 119.99792 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00250 * 179.97438 * 7 6 5 10 10 C 1.46490 * 120.00072 * 0.02562 * 9 7 6 11 11 C 1.46507 * 119.99901 * 180.02562 * 9 7 6 12 12 C 1.50690 * 109.47191 * 89.99879 * 11 9 7 13 13 H 1.07996 * 120.00275 * 359.97438 * 12 11 9 14 14 C 1.37886 * 120.00028 * 179.97438 * 12 11 9 15 15 N 1.31514 * 119.99366 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00240 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47396 * 89.99689 * 16 14 12 18 18 H 1.48502 * 109.47286 * 210.00390 * 16 14 12 19 19 H 1.48501 * 109.47211 * 330.00029 * 16 14 12 20 20 C 1.46903 * 110.99857 * 193.71278 * 4 2 1 21 21 C 1.52993 * 109.47172 * 66.04757 * 20 4 2 22 22 C 1.52998 * 117.49960 * 243.62421 * 21 20 4 23 23 C 1.52997 * 117.49928 * 174.99877 * 21 20 4 24 24 H 1.08993 * 109.47341 * 183.40080 * 1 2 3 25 25 H 1.09001 * 109.46925 * 303.40448 * 1 2 3 26 26 H 1.08999 * 109.46979 * 63.39960 * 1 2 3 27 27 H 1.08999 * 109.47030 * 120.00365 * 2 1 3 28 28 H 1.08999 * 109.47277 * 300.00214 * 3 2 1 29 29 H 1.08998 * 109.46766 * 60.00274 * 3 2 1 30 30 H 1.09002 * 109.47217 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47580 * 315.87095 * 5 4 2 32 32 H 1.09003 * 109.47401 * 75.87205 * 5 4 2 33 33 H 1.08997 * 109.47384 * 294.80346 * 6 5 4 34 34 H 1.09000 * 109.46855 * 54.80240 * 6 5 4 35 35 H 1.08997 * 109.47347 * 89.99674 * 10 9 7 36 36 H 1.08997 * 109.47455 * 209.99786 * 10 9 7 37 37 H 1.09002 * 109.47058 * 329.99834 * 10 9 7 38 38 H 1.09003 * 109.46918 * 210.00490 * 11 9 7 39 39 H 1.09004 * 109.46796 * 329.99593 * 11 9 7 40 40 H 0.97002 * 119.99539 * 179.97438 * 15 14 12 41 41 H 1.09000 * 109.46616 * 186.04953 * 20 4 2 42 42 H 1.09002 * 109.46959 * 306.04585 * 20 4 2 43 43 H 1.09001 * 115.55122 * 29.32639 * 21 20 4 44 44 H 1.08994 * 117.50003 * 359.97438 * 22 21 20 45 45 H 1.09006 * 117.50173 * 145.02219 * 22 21 20 46 46 H 1.09004 * 117.50260 * 214.97926 * 23 21 20 47 47 H 1.09000 * 117.49944 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1995 5 6 1.7477 0.0945 -2.4096 6 6 1.8983 -0.7980 -3.6431 7 6 1.4961 -0.0266 -4.8736 8 8 1.1258 1.1240 -4.7739 9 7 1.5487 -0.6150 -6.0850 10 6 1.9963 -2.0046 -6.2055 11 6 1.1581 0.1352 -7.2813 12 6 2.3640 0.8378 -7.8496 13 1 3.3251 0.7361 -7.3677 14 6 2.2403 1.6105 -8.9848 15 7 1.0700 1.7338 -9.5719 16 14 3.7352 2.4809 -9.6897 17 1 4.4098 1.5915 -10.6691 18 1 3.3064 3.7300 -10.3687 19 1 4.6781 2.8131 -8.5916 20 6 3.4513 -1.0003 -1.0822 21 6 3.6637 -2.0196 0.0388 22 6 4.4847 -1.5756 1.2511 23 6 5.0803 -2.5603 0.2428 24 1 -0.3633 -1.0258 0.0610 25 1 -0.3633 0.5658 0.8579 26 1 -0.3633 0.4602 -0.9189 27 1 1.8933 -0.5139 0.8899 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 3.1301 1.4424 -0.0005 31 1 0.7318 0.4872 -2.3671 32 1 2.4547 0.9219 -2.4714 33 1 2.9366 -1.1161 -3.7370 34 1 1.2581 -1.6739 -3.5381 35 1 1.1383 -2.6714 -6.1210 36 1 2.4750 -2.1495 -7.1740 37 1 2.7089 -2.2270 -5.4112 38 1 0.7537 -0.5516 -8.0249 39 1 0.3995 0.8718 -7.0166 40 1 0.9829 2.2777 -10.3703 41 1 3.8120 -1.4148 -2.0235 42 1 4.0014 -0.0877 -0.8526 43 1 2.8335 -2.7034 0.2159 44 1 4.8738 -0.5575 1.2499 45 1 4.1947 -1.9673 2.2262 46 1 5.1822 -3.5999 0.5545 47 1 5.8610 -2.1896 -0.4213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042582925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:51 Heat of formation + Delta-G solvation = -34.455737 kcal Electronic energy + Delta-G solvation = -22954.697222 eV Core-core repulsion = 19751.368994 eV Total energy + Delta-G solvation = -3203.328228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85981 -39.82238 -37.45643 -36.57313 -34.77488 -33.68721 -31.42967 -29.68189 -28.10710 -27.46936 -26.97018 -25.21064 -23.60777 -23.08671 -21.73802 -20.11673 -19.91890 -18.70967 -17.85170 -17.47343 -17.00411 -16.56891 -16.26983 -15.90668 -15.64951 -15.57180 -14.86036 -14.62961 -14.29833 -14.14463 -13.82915 -13.72715 -13.46009 -13.39828 -13.21430 -13.06264 -12.85617 -12.73423 -12.65727 -12.46178 -12.32293 -12.21819 -12.16824 -11.94031 -11.92292 -11.71623 -11.55184 -11.07785 -10.71411 -10.65314 -10.57811 -9.41193 -9.26626 -8.23485 -6.38692 1.35091 1.38285 1.48548 1.85524 2.28705 2.41902 2.86804 3.04755 3.06008 3.81465 3.84263 3.94997 4.05295 4.08865 4.14876 4.19973 4.30302 4.41526 4.47169 4.48830 4.56800 4.68273 4.72768 4.74506 4.84500 4.84863 4.91555 4.93223 4.95911 4.97370 5.03666 5.04235 5.08641 5.12449 5.22972 5.31923 5.34242 5.38498 5.45524 5.55677 5.84414 6.05438 6.10606 6.22372 6.68849 6.80160 7.27252 7.49498 8.83615 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020293 B = 0.003579 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.426214 B = 7822.155721 C = 8141.286078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.079 3.921 3 C -0.184 4.184 4 N -0.525 5.525 5 C 0.079 3.921 6 C -0.114 4.114 7 C 0.494 3.506 8 O -0.601 6.601 9 N -0.612 5.612 10 C 0.079 3.921 11 C 0.258 3.742 12 C -0.544 4.544 13 H 0.052 0.948 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.969 3.031 17 H -0.262 1.262 18 H -0.280 1.280 19 H -0.274 1.274 20 C 0.078 3.922 21 C -0.145 4.145 22 C -0.182 4.182 23 C -0.175 4.175 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.099 0.901 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.022 0.978 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.023 0.977 39 H -0.004 1.004 40 H 0.267 0.733 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 -10.971 21.760 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.243 4.243 4 N -0.248 5.248 5 C -0.050 4.050 6 C -0.154 4.154 7 C 0.283 3.717 8 O -0.484 6.484 9 N -0.343 5.343 10 C -0.063 4.063 11 C 0.137 3.863 12 C -0.582 4.582 13 H 0.071 0.929 14 C -0.193 4.193 15 N -0.569 5.569 16 Si 0.793 3.207 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.198 1.198 20 C -0.049 4.049 21 C -0.164 4.164 22 C -0.219 4.219 23 C -0.213 4.213 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.117 0.883 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.041 0.959 39 H 0.014 0.986 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.130 0.870 44 H 0.106 0.894 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.153 -10.777 21.597 24.680 hybrid contribution 0.804 1.675 -0.911 2.070 sum 5.957 -9.102 20.686 23.371 Atomic orbital electron populations 1.21845 0.94243 1.02488 1.01457 1.21750 0.95855 0.92176 0.93160 1.22450 1.01100 0.98490 1.02231 1.62207 1.16360 1.44657 1.01620 1.21621 1.01117 0.93506 0.88719 1.21550 1.04428 0.99655 0.89804 1.21402 0.77572 0.86966 0.85754 1.90627 1.50214 1.20362 1.87150 1.48204 1.64470 1.14663 1.06954 1.21924 1.00519 0.80113 1.03728 1.18743 0.94760 0.90802 0.82004 1.21708 0.95512 1.30415 1.10587 0.92925 1.25891 0.99377 0.96939 0.97074 1.70057 1.25146 1.40765 1.20890 0.85393 0.78774 0.78129 0.78374 1.18639 1.20565 1.19840 1.21787 0.87739 0.96651 0.98769 1.22160 0.95457 1.01474 0.97271 1.23103 1.04287 0.99778 0.94745 1.23014 0.95706 0.99746 1.02795 0.91562 0.91060 0.94240 0.88282 0.94164 0.90802 0.92922 0.91338 0.95975 0.87562 0.86332 0.91126 0.91639 0.88781 0.95903 0.98573 0.92369 0.90346 0.95091 0.86990 0.89405 0.87942 0.87716 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.28 71.98 0.67 -2.08 16 2 C 0.08 1.52 2.79 44.91 0.13 1.65 16 3 C -0.18 -3.82 8.44 71.98 0.61 -3.22 16 4 N -0.52 -11.43 4.38 -870.98 -3.82 -15.24 16 5 C 0.08 2.26 2.92 86.30 0.25 2.51 16 6 C -0.11 -3.29 4.21 29.85 0.13 -3.17 16 7 C 0.49 21.06 7.67 87.66 0.67 21.73 16 8 O -0.60 -32.04 15.50 -3.05 -0.05 -32.09 16 9 N -0.61 -26.64 2.86 -851.15 -2.43 -29.07 16 10 C 0.08 2.40 10.24 127.77 1.31 3.70 16 11 C 0.26 14.35 5.16 85.63 0.44 14.79 16 12 C -0.54 -32.06 9.39 25.60 0.24 -31.82 16 13 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 14 C 0.01 0.36 5.46 84.66 0.46 0.82 16 15 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 16 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 20 C 0.08 1.50 4.99 86.30 0.43 1.93 16 21 C -0.15 -2.21 4.67 -10.80 -0.05 -2.26 16 22 C -0.18 -2.41 10.05 30.59 0.31 -2.10 16 23 C -0.18 -2.31 10.25 30.59 0.31 -1.99 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.04 0.93 6.33 -2.39 -0.02 0.91 16 27 H 0.10 1.65 6.82 -2.39 -0.02 1.64 16 28 H 0.04 1.03 6.64 -2.39 -0.02 1.02 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.08 6.74 -2.39 -0.02 1.06 16 31 H 0.07 2.23 5.89 -2.39 -0.01 2.21 16 32 H 0.02 0.72 7.15 -2.39 -0.02 0.70 16 33 H 0.11 2.61 6.05 -2.39 -0.01 2.59 16 34 H 0.12 2.87 8.11 -2.39 -0.02 2.86 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 37 H 0.09 2.16 6.44 -2.39 -0.02 2.14 16 38 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 39 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 41 H 0.08 1.51 6.49 -2.39 -0.02 1.50 16 42 H 0.03 0.64 6.33 -2.39 -0.02 0.62 16 43 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.09 1.22 8.03 -2.39 -0.02 1.20 16 45 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -73.26 368.25 2.84 -70.42 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.92 Total: 14.77 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 5.91 Total: 0.51 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -5.96 Total: -101.17 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.05 Total: -32.09 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -73.26 2.84 -70.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042582925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.966 kcal (2) G-P(sol) polarization free energy of solvation -73.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds