Wall clock time and date at job start Tue Mar 31 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47017 * 2 1 4 4 N 1.46498 * 109.46901 * 179.97438 * 3 2 1 5 5 C 1.36929 * 120.00340 * 274.31868 * 4 3 2 6 6 H 1.08002 * 120.00272 * 337.84059 * 5 4 3 7 7 C 1.38811 * 120.00257 * 157.84181 * 5 4 3 8 8 N 1.31621 * 120.00356 * 7.73610 * 7 5 4 9 9 Si 1.86802 * 120.00226 * 187.73336 * 7 5 4 10 10 H 1.48497 * 109.47022 * 59.99838 * 9 7 5 11 11 H 1.48494 * 109.47225 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47161 * 300.00205 * 9 7 5 13 13 C 1.46507 * 119.99761 * 94.32051 * 4 3 2 14 14 C 1.50701 * 109.46823 * 269.99798 * 13 4 3 15 15 O 1.21279 * 120.00162 * 359.97438 * 14 13 4 16 16 N 1.34781 * 119.99787 * 180.02562 * 14 13 4 17 17 C 1.46497 * 120.00110 * 180.02562 * 16 14 13 18 18 C 1.54068 * 108.87253 * 277.97280 * 17 16 14 19 19 C 1.54066 * 112.81443 * 197.50521 * 18 17 16 20 20 C 1.50473 * 112.49945 * 318.28373 * 19 18 17 21 21 C 1.54238 * 108.51924 * 94.15232 * 20 19 18 22 22 C 1.45536 * 112.40779 * 280.01259 * 21 20 19 23 23 C 1.50472 * 108.87724 * 154.99750 * 17 16 14 24 24 H 1.08999 * 109.47278 * 300.00265 * 1 2 3 25 25 H 1.09000 * 109.47266 * 59.99946 * 1 2 3 26 26 H 1.09003 * 109.47348 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47278 * 239.99735 * 2 1 3 28 28 H 1.08998 * 109.46854 * 119.99735 * 2 1 3 29 29 H 1.08999 * 109.47313 * 59.99756 * 3 2 1 30 30 H 1.08998 * 109.47092 * 299.99589 * 3 2 1 31 31 H 0.96990 * 120.00281 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.46923 * 150.00125 * 13 4 3 33 33 H 1.09000 * 109.47320 * 29.99919 * 13 4 3 34 34 H 0.97006 * 119.99996 * 359.97438 * 16 14 13 35 35 H 1.08997 * 108.76885 * 36.47852 * 17 16 14 36 36 H 1.09002 * 108.81599 * 318.36536 * 18 17 16 37 37 H 1.08997 * 108.81701 * 76.75673 * 18 17 16 38 38 H 1.09001 * 108.87703 * 197.50829 * 19 18 17 39 39 H 1.09002 * 108.88182 * 79.06377 * 19 18 17 40 40 H 1.09001 * 109.62485 * 334.43944 * 20 19 18 41 41 H 1.09006 * 109.62443 * 213.86247 * 20 19 18 42 42 H 1.08997 * 108.89514 * 40.76959 * 21 20 19 43 43 H 1.09004 * 108.89173 * 159.35450 * 21 20 19 44 44 H 1.08998 * 108.89820 * 182.69166 * 22 21 20 45 45 H 1.09006 * 108.89464 * 301.18483 * 22 21 20 46 46 H 1.09000 * 109.62686 * 95.21502 * 23 17 16 47 47 H 1.09002 * 109.78887 * 334.72815 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4424 0.0006 5 6 4.1891 1.3533 1.1834 6 1 3.7087 1.6374 2.1080 7 6 5.5004 0.8978 1.1941 8 7 6.1365 0.6967 0.0595 9 14 6.3622 0.5704 2.8188 10 1 5.6158 -0.4671 3.5747 11 1 7.7445 0.0943 2.5587 12 1 6.4111 1.8233 3.6144 13 6 4.2379 1.5378 -1.2643 14 6 4.4893 0.1537 -1.8048 15 8 4.0954 -0.8168 -1.1934 16 7 5.1528 -0.0057 -2.9671 17 6 5.3966 -1.3511 -3.4928 18 6 6.6338 -1.9436 -2.7913 19 6 7.2311 -3.1455 -3.5478 20 6 6.1736 -4.0752 -4.0783 21 6 5.8599 -3.6796 -5.5357 22 6 4.9623 -2.5370 -5.6195 23 6 5.5662 -1.2672 -4.9856 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 7.0526 0.3781 0.0670 32 1 5.1903 2.0404 -1.0953 33 1 3.6492 2.1073 -1.9834 34 1 5.4681 0.7706 -3.4559 35 1 4.5320 -1.9765 -3.2706 36 1 7.3950 -1.1680 -2.7066 37 1 6.3491 -2.2667 -1.7900 38 1 7.8812 -3.7003 -2.8712 39 1 7.8270 -2.7762 -4.3825 40 1 5.2716 -3.9873 -3.4727 41 1 6.5398 -5.1015 -4.0482 42 1 6.7926 -3.4337 -6.0433 43 1 5.3971 -4.5280 -6.0400 44 1 4.7418 -2.3374 -6.6681 45 1 4.0324 -2.7802 -5.1053 46 1 6.6265 -1.2044 -5.2307 47 1 5.0495 -0.3864 -5.3668 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050273100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:41 Heat of formation + Delta-G solvation = -33.902268 kcal Electronic energy + Delta-G solvation = -24196.962523 eV Core-core repulsion = 20993.658296 eV Total energy + Delta-G solvation = -3203.304228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.22371 -37.60554 -35.51195 -33.50223 -32.77491 -32.08852 -30.51741 -29.89306 -26.79279 -25.40692 -24.63565 -23.67537 -21.92314 -20.58423 -20.06334 -19.21850 -18.83260 -16.79295 -15.92971 -15.56357 -15.17382 -14.77147 -14.21120 -14.13898 -13.81396 -13.62437 -13.54061 -12.89785 -12.81782 -12.78773 -12.65952 -12.04259 -11.86532 -11.62583 -11.42173 -11.11053 -11.02078 -10.89022 -10.72233 -10.62072 -10.57440 -10.47401 -10.23892 -10.20453 -10.13995 -9.98751 -9.83110 -9.75382 -9.48151 -8.64800 -8.09711 -7.79794 -6.69186 -5.71763 -3.10346 3.43497 3.49163 3.51962 4.28182 4.44375 4.67438 4.75687 4.87170 5.12604 5.38240 5.42033 5.45159 5.47504 5.59218 5.62088 5.65878 5.81914 5.88366 5.92898 5.96267 6.06737 6.16228 6.22376 6.23545 6.25989 6.30271 6.34252 6.38744 6.48554 6.51365 6.54954 6.60875 6.67754 6.73286 6.85077 6.96153 7.04735 7.21441 7.41488 7.53939 7.73224 7.82130 8.44201 8.85818 9.29168 9.86225 10.02589 10.38148 11.34630 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.005997 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.309819 B = 4668.246221 C = 5752.813934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.152 3.848 4 N -0.579 5.579 5 C -0.240 4.240 6 H 0.071 0.929 7 C 0.008 3.992 8 N -0.906 5.906 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.287 1.287 13 C 0.164 3.836 14 C 0.531 3.469 15 O -0.539 6.539 16 N -0.750 5.750 17 C 0.158 3.842 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.123 4.123 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.034 0.966 31 H 0.252 0.748 32 H 0.117 0.883 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 -3.267 -11.866 12.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.026 3.974 4 N -0.298 5.298 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.188 4.188 8 N -0.553 5.553 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.213 1.213 13 C 0.034 3.966 14 C 0.319 3.681 15 O -0.414 6.414 16 N -0.404 5.404 17 C 0.052 3.948 18 C -0.160 4.160 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.161 4.161 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.134 0.866 33 H 0.040 0.960 34 H 0.215 0.785 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.221 -3.983 -11.349 12.089 hybrid contribution 0.914 -0.218 0.702 1.173 sum -0.307 -4.202 -10.647 11.450 Atomic orbital electron populations 1.21788 0.98349 1.00113 1.00334 1.22157 0.92251 1.00517 1.03105 1.20894 0.84525 0.93932 0.98073 1.43748 0.99548 1.84194 1.02327 1.19151 0.95212 1.36329 0.86162 0.91108 1.24892 0.97860 0.99320 0.96775 1.69651 1.11347 1.50626 1.23649 0.86297 0.78320 0.78092 0.83535 1.21317 1.21875 1.21316 1.20741 0.98423 0.91572 0.85869 1.21966 0.74687 0.94096 0.77376 1.90470 1.52271 1.42134 1.56480 1.46439 1.61724 1.06371 1.25842 1.20422 0.97478 0.85918 0.90979 1.22240 0.97486 0.96426 0.99831 1.21321 0.97773 0.96559 0.99592 1.21371 1.00015 0.98444 0.95917 1.20484 0.99873 0.97917 0.96972 1.20421 0.99391 0.95072 1.00402 1.21654 1.01241 0.97728 0.95461 0.93702 0.93868 0.94066 0.91590 0.92370 0.94214 0.94788 0.93679 0.86586 0.96035 0.78463 0.91164 0.92170 0.91549 0.92886 0.92698 0.91322 0.92488 0.92413 0.92767 0.92533 0.92032 0.91621 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.14 -2.99 5.67 -26.73 -0.15 -3.14 16 3 C 0.15 3.30 5.72 -4.04 -0.02 3.27 16 4 N -0.58 -14.53 2.07 -174.61 -0.36 -14.89 16 5 C -0.24 -6.58 9.70 -15.06 -0.15 -6.72 16 6 H 0.07 1.92 7.84 -52.49 -0.41 1.51 16 7 C 0.01 0.22 5.41 -17.43 -0.09 0.13 16 8 N -0.91 -24.88 8.21 55.49 0.46 -24.43 16 9 Si 0.91 22.46 29.56 -169.99 -5.02 17.44 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.16 3.82 5.47 -5.19 -0.03 3.79 16 14 C 0.53 12.29 5.71 -10.98 -0.06 12.23 16 15 O -0.54 -14.53 13.56 5.56 0.08 -14.45 16 16 N -0.75 -13.96 4.95 -54.50 -0.27 -14.23 16 17 C 0.16 2.64 1.94 -68.64 -0.13 2.51 16 18 C -0.12 -2.11 5.37 -25.62 -0.14 -2.25 16 19 C -0.11 -1.58 5.31 -27.44 -0.15 -1.72 16 20 C -0.12 -1.51 5.61 -27.35 -0.15 -1.66 16 21 C -0.12 -1.25 5.26 -29.60 -0.16 -1.41 16 22 C -0.11 -1.32 5.26 -29.60 -0.16 -1.47 16 23 C -0.12 -1.57 5.17 -27.34 -0.14 -1.71 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.55 6.39 -51.93 -0.33 1.22 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.03 0.67 7.84 -51.93 -0.41 0.26 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.12 2.91 6.24 -51.93 -0.32 2.59 16 33 H 0.02 0.45 7.86 -51.93 -0.41 0.04 16 34 H 0.38 6.18 8.48 -40.82 -0.35 5.83 16 35 H 0.07 1.35 6.08 -51.93 -0.32 1.03 16 36 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.68 6.63 -51.93 -0.34 0.34 16 40 H 0.07 0.99 6.98 -51.93 -0.36 0.63 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.59 7.47 -51.93 -0.39 0.20 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.77 7.47 -51.93 -0.39 0.39 16 46 H 0.07 0.80 6.98 -51.93 -0.36 0.43 16 47 H 0.07 0.81 7.86 -51.93 -0.41 0.40 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -30.19 353.07 -9.54 -39.73 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -8.58 Total: 5.76 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -1.16 Total: -0.26 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.18 Total: -53.55 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.19 -9.54 -39.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050273100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.833 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds