Wall clock time and date at job start Tue Mar 31 2020 06:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46868 * 2 1 4 4 N 1.46500 * 109.47199 * 119.99738 * 2 1 3 5 5 C 1.46505 * 119.99928 * 300.00506 * 4 2 1 6 6 C 1.34773 * 120.00105 * 120.00039 * 4 2 1 7 7 O 1.21281 * 119.99881 * 359.97438 * 6 4 2 8 8 C 1.50696 * 120.00150 * 180.02562 * 6 4 2 9 9 C 1.53125 * 109.52456 * 179.97438 * 8 6 4 10 10 C 1.53033 * 109.28287 * 177.61794 * 9 8 6 11 11 N 1.46851 * 109.52231 * 300.82460 * 10 9 8 12 12 C 1.46898 * 110.99682 * 185.83477 * 11 10 9 13 13 C 1.53006 * 109.47006 * 170.00115 * 12 11 10 14 14 C 1.50698 * 109.47184 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99819 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00046 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00192 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47309 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47510 * 119.99847 * 18 16 14 21 21 H 1.48506 * 109.47246 * 239.99882 * 18 16 14 22 22 C 1.46846 * 111.19864 * 61.73920 * 11 10 9 23 23 C 1.53033 * 109.52460 * 298.25500 * 22 11 10 24 24 H 1.09004 * 109.47044 * 299.99916 * 1 2 3 25 25 H 1.08998 * 109.46896 * 59.99956 * 1 2 3 26 26 H 1.09001 * 109.47089 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46934 * 239.99829 * 2 1 3 28 28 H 1.08996 * 109.47483 * 60.00164 * 3 2 1 29 29 H 1.09007 * 109.46772 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46897 * 299.99832 * 3 2 1 31 31 H 1.09006 * 109.46640 * 269.99345 * 5 4 2 32 32 H 1.08994 * 109.47612 * 29.99284 * 5 4 2 33 33 H 1.09000 * 109.47108 * 150.00091 * 5 4 2 34 34 H 1.08994 * 109.52600 * 59.86993 * 8 6 4 35 35 H 1.09005 * 109.50073 * 57.67769 * 9 8 6 36 36 H 1.08991 * 109.50379 * 297.56284 * 9 8 6 37 37 H 1.08989 * 109.46624 * 180.80484 * 10 9 8 38 38 H 1.09002 * 109.45127 * 60.82884 * 10 9 8 39 39 H 1.09001 * 109.47392 * 50.00413 * 12 11 10 40 40 H 1.09001 * 109.47520 * 290.00136 * 12 11 10 41 41 H 1.09001 * 109.47002 * 299.99782 * 13 12 11 42 42 H 1.08993 * 109.46955 * 60.00219 * 13 12 11 43 43 H 0.96996 * 120.00505 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.46555 * 58.27646 * 22 11 10 45 45 H 1.09001 * 109.46296 * 178.24247 * 22 11 10 46 46 H 1.08997 * 109.50475 * 299.23909 * 23 22 11 47 47 H 1.09002 * 109.50799 * 179.12007 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6643 -0.1900 2.5268 6 6 2.7932 -1.7863 1.0726 7 8 3.0858 -2.2010 -0.0289 8 6 3.2951 -2.4970 2.3030 9 6 4.1456 -3.7007 1.8877 10 6 4.7010 -4.3831 3.1398 11 7 5.5140 -3.4258 3.9007 12 6 6.1761 -4.0828 5.0356 13 6 7.2000 -3.1271 5.6516 14 6 7.8796 -3.8012 6.8155 15 1 7.6082 -4.8102 7.0888 16 6 8.8473 -3.1295 7.5321 17 7 9.1775 -1.9007 7.1997 18 14 9.6892 -3.9649 8.9752 19 1 9.1417 -5.3352 9.1423 20 1 11.1498 -4.0429 8.7187 21 1 9.4451 -3.1806 10.2124 22 6 4.7075 -2.2842 4.3509 23 6 4.1524 -1.5390 3.1350 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 2.4157 0.5275 2.8568 32 1 0.6904 0.2975 2.4844 33 1 1.6238 -1.0225 3.2292 34 1 2.4478 -2.8380 2.8978 35 1 4.9709 -3.3639 1.2603 36 1 3.5295 -4.4069 1.3313 37 1 5.3187 -5.2320 2.8470 38 1 3.8751 -4.7316 3.7599 39 1 6.6826 -4.9836 4.6890 40 1 5.4316 -4.3502 5.7855 41 1 7.9445 -2.8597 4.9018 42 1 6.6935 -2.2263 5.9982 43 1 9.8579 -1.4280 7.7040 44 1 3.8817 -2.6427 4.9654 45 1 5.3300 -1.6087 4.9377 46 1 4.9778 -1.1683 2.5273 47 1 3.5410 -0.7010 3.4696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051903396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:21 Heat of formation + Delta-G solvation = -46.405640 kcal Electronic energy + Delta-G solvation = -23067.326329 eV Core-core repulsion = 19863.479915 eV Total energy + Delta-G solvation = -3203.846415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55868 -38.27898 -36.59251 -34.36125 -32.95762 -32.00275 -30.52922 -29.20063 -27.52340 -27.20887 -25.63119 -23.62133 -22.87999 -21.68026 -20.14163 -19.63407 -19.03685 -17.28553 -16.57392 -16.23699 -15.60474 -15.08727 -14.68329 -14.45950 -14.39198 -14.15982 -13.88322 -13.52322 -13.27112 -13.21970 -12.89450 -12.59205 -12.48631 -12.41565 -12.28079 -12.09086 -11.70219 -11.55114 -11.25477 -11.16326 -11.09423 -10.95390 -10.85341 -10.58759 -10.47035 -10.29090 -9.78830 -9.61690 -9.28577 -9.08920 -8.84372 -8.32355 -7.68152 -5.98998 -4.01134 2.58369 2.82107 3.31412 3.38966 3.42871 4.33159 4.39730 4.55147 4.65920 4.76873 4.80958 4.87029 4.94693 4.97759 5.17733 5.25257 5.29574 5.36245 5.37011 5.42209 5.45128 5.49587 5.60891 5.64750 5.71748 5.80655 5.87924 5.88512 5.93090 5.97735 6.17179 6.24365 6.32783 6.35916 6.41761 6.52691 6.58260 6.98989 7.22728 7.53663 7.61321 7.82347 7.91745 8.09936 8.11507 8.44856 9.06425 9.62501 11.12387 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032572 B = 0.003101 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.427285 B = 9027.158926 C = 9488.937976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 C -0.161 4.161 4 N -0.614 5.614 5 C 0.073 3.927 6 C 0.523 3.477 7 O -0.541 6.541 8 C -0.105 4.105 9 C -0.093 4.093 10 C 0.055 3.945 11 N -0.539 5.539 12 C 0.063 3.937 13 C 0.028 3.972 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.057 3.943 23 C -0.115 4.115 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.019 0.981 41 H 0.025 0.975 42 H 0.017 0.983 43 H 0.260 0.740 44 H 0.026 0.974 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.845 4.969 -11.572 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 C -0.219 4.219 4 N -0.348 5.348 5 C -0.070 4.070 6 C 0.312 3.688 7 O -0.417 6.417 8 C -0.126 4.126 9 C -0.131 4.131 10 C -0.073 4.073 11 N -0.264 5.264 12 C -0.063 4.063 13 C -0.010 4.010 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.071 4.071 23 C -0.153 4.153 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.109 0.891 46 H 0.094 0.906 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.212 5.061 -12.424 22.619 hybrid contribution -0.189 -0.598 1.510 1.635 sum -18.401 4.463 -10.913 21.855 Atomic orbital electron populations 1.22143 0.95114 1.02337 1.02278 1.21048 0.93882 0.93236 0.89329 1.22134 1.01964 0.95537 1.02234 1.47944 1.51380 1.28584 1.06927 1.21958 1.00857 1.00411 0.83730 1.20869 0.76989 0.79691 0.91280 1.90662 1.57383 1.65548 1.28145 1.21400 0.99415 0.97346 0.94432 1.21398 0.99124 0.95197 0.97406 1.22075 0.95653 0.95232 0.94357 1.62018 1.29943 1.08872 1.25529 1.22321 0.96503 0.98366 0.89127 1.19105 0.93013 0.93925 0.94927 1.21239 1.20584 1.00314 1.13826 0.92776 1.24991 0.96873 0.94899 0.97584 1.69978 1.31851 1.11001 1.40406 0.86553 0.79430 0.79614 0.82482 1.19796 1.20990 1.21072 1.22074 0.95758 0.94111 0.95130 1.21853 0.99164 0.97175 0.97113 0.92283 0.91459 0.92346 0.88211 0.92307 0.92098 0.91559 0.91915 0.91181 0.90554 0.89181 0.90346 0.91541 0.90721 0.95696 0.92067 0.96304 0.95703 0.96509 0.93078 0.95581 0.89137 0.90633 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.17 37.16 0.34 -0.78 16 2 C 0.13 1.17 3.25 -67.93 -0.22 0.95 16 3 C -0.16 -1.23 9.19 37.16 0.34 -0.89 16 4 N -0.61 -6.27 2.76 -173.93 -0.48 -6.75 16 5 C 0.07 0.55 7.87 59.85 0.47 1.02 16 6 C 0.52 6.90 7.08 -10.99 -0.08 6.82 16 7 O -0.54 -8.98 15.31 5.56 0.09 -8.89 16 8 C -0.10 -1.31 1.78 -91.64 -0.16 -1.47 16 9 C -0.09 -1.31 4.68 -26.65 -0.12 -1.43 16 10 C 0.06 0.84 5.46 -3.83 -0.02 0.82 16 11 N -0.54 -9.78 4.66 -234.67 -1.09 -10.87 16 12 C 0.06 1.34 4.90 -3.82 -0.02 1.32 16 13 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 14 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 C 0.06 0.92 5.29 -3.84 -0.02 0.90 16 23 C -0.12 -1.50 5.00 -26.65 -0.13 -1.64 16 24 H 0.06 0.35 6.66 -51.93 -0.35 0.01 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.10 1.13 6.90 -51.93 -0.36 0.77 16 28 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 7.01 -51.93 -0.36 0.09 16 32 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 33 H 0.08 0.54 5.99 -51.93 -0.31 0.23 16 34 H 0.09 0.99 7.40 -51.93 -0.38 0.60 16 35 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.12 8.01 -51.94 -0.42 0.70 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.29 7.99 -51.93 -0.41 0.87 16 40 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 41 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.02 0.45 6.43 -51.93 -0.33 0.12 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 1.65 6.21 -51.93 -0.32 1.33 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.07 0.79 4.65 -51.93 -0.24 0.55 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -32.16 356.85 -8.98 -41.13 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -8.41 Total: -3.26 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.17 Total: -7.29 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.84 Total: -43.69 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.16 -8.98 -41.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051903396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.271 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds