Wall clock time and date at job start Tue Mar 31 2020 06:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46868 * 2 1 4 4 N 1.46500 * 109.47199 * 119.99738 * 2 1 3 5 5 C 1.46505 * 119.99928 * 300.00506 * 4 2 1 6 6 C 1.34773 * 120.00105 * 120.00039 * 4 2 1 7 7 O 1.21281 * 119.99881 * 359.97438 * 6 4 2 8 8 C 1.50696 * 120.00150 * 180.02562 * 6 4 2 9 9 C 1.53125 * 109.52456 * 179.97438 * 8 6 4 10 10 C 1.53033 * 109.28287 * 177.61794 * 9 8 6 11 11 N 1.46851 * 109.52231 * 300.82460 * 10 9 8 12 12 C 1.46898 * 110.99682 * 185.83477 * 11 10 9 13 13 C 1.53006 * 109.47006 * 170.00115 * 12 11 10 14 14 C 1.50698 * 109.47184 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99819 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00046 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00192 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47309 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47510 * 119.99847 * 18 16 14 21 21 H 1.48506 * 109.47246 * 239.99882 * 18 16 14 22 22 C 1.46846 * 111.19864 * 61.73920 * 11 10 9 23 23 C 1.53033 * 109.52460 * 298.25500 * 22 11 10 24 24 H 1.09004 * 109.47044 * 299.99916 * 1 2 3 25 25 H 1.08998 * 109.46896 * 59.99956 * 1 2 3 26 26 H 1.09001 * 109.47089 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46934 * 239.99829 * 2 1 3 28 28 H 1.08996 * 109.47483 * 60.00164 * 3 2 1 29 29 H 1.09007 * 109.46772 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46897 * 299.99832 * 3 2 1 31 31 H 1.09006 * 109.46640 * 269.99345 * 5 4 2 32 32 H 1.08994 * 109.47612 * 29.99284 * 5 4 2 33 33 H 1.09000 * 109.47108 * 150.00091 * 5 4 2 34 34 H 1.08994 * 109.52600 * 59.86993 * 8 6 4 35 35 H 1.09005 * 109.50073 * 57.67769 * 9 8 6 36 36 H 1.08991 * 109.50379 * 297.56284 * 9 8 6 37 37 H 1.08989 * 109.46624 * 180.80484 * 10 9 8 38 38 H 1.09002 * 109.45127 * 60.82884 * 10 9 8 39 39 H 1.09001 * 109.47392 * 50.00413 * 12 11 10 40 40 H 1.09001 * 109.47520 * 290.00136 * 12 11 10 41 41 H 1.09001 * 109.47002 * 299.99782 * 13 12 11 42 42 H 1.08993 * 109.46955 * 60.00219 * 13 12 11 43 43 H 0.96996 * 120.00505 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.46555 * 58.27646 * 22 11 10 45 45 H 1.09001 * 109.46296 * 178.24247 * 22 11 10 46 46 H 1.08997 * 109.50475 * 299.23909 * 23 22 11 47 47 H 1.09002 * 109.50799 * 179.12007 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6643 -0.1900 2.5268 6 6 2.7932 -1.7863 1.0726 7 8 3.0858 -2.2010 -0.0289 8 6 3.2951 -2.4970 2.3030 9 6 4.1456 -3.7007 1.8877 10 6 4.7010 -4.3831 3.1398 11 7 5.5140 -3.4258 3.9007 12 6 6.1761 -4.0828 5.0356 13 6 7.2000 -3.1271 5.6516 14 6 7.8796 -3.8012 6.8155 15 1 7.6082 -4.8102 7.0888 16 6 8.8473 -3.1295 7.5321 17 7 9.1775 -1.9007 7.1997 18 14 9.6892 -3.9649 8.9752 19 1 9.1417 -5.3352 9.1423 20 1 11.1498 -4.0429 8.7187 21 1 9.4451 -3.1806 10.2124 22 6 4.7075 -2.2842 4.3509 23 6 4.1524 -1.5390 3.1350 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 2.4157 0.5275 2.8568 32 1 0.6904 0.2975 2.4844 33 1 1.6238 -1.0225 3.2292 34 1 2.4478 -2.8380 2.8978 35 1 4.9709 -3.3639 1.2603 36 1 3.5295 -4.4069 1.3313 37 1 5.3187 -5.2320 2.8470 38 1 3.8751 -4.7316 3.7599 39 1 6.6826 -4.9836 4.6890 40 1 5.4316 -4.3502 5.7855 41 1 7.9445 -2.8597 4.9018 42 1 6.6935 -2.2263 5.9982 43 1 9.8579 -1.4280 7.7040 44 1 3.8817 -2.6427 4.9654 45 1 5.3300 -1.6087 4.9377 46 1 4.9778 -1.1683 2.5273 47 1 3.5410 -0.7010 3.4696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051903396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:21 Heat of formation + Delta-G solvation = -66.775354 kcal Electronic energy + Delta-G solvation = -23068.209627 eV Core-core repulsion = 19863.479915 eV Total energy + Delta-G solvation = -3204.729712 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55977 -39.53028 -37.50680 -35.93556 -34.60975 -33.14907 -31.70358 -30.98125 -28.10271 -27.94095 -27.20118 -25.27429 -24.10421 -22.80718 -21.73431 -20.78848 -19.94049 -18.57555 -18.22633 -17.29369 -16.67221 -16.54066 -16.26107 -15.95938 -15.27169 -15.19265 -15.01490 -14.70661 -14.43678 -14.33315 -14.13157 -13.87354 -13.67957 -13.28666 -13.16614 -13.03400 -12.98519 -12.86963 -12.71515 -12.55730 -12.30980 -12.22967 -12.08998 -11.92754 -11.79480 -11.63066 -11.49257 -11.18397 -11.13404 -10.62944 -10.50760 -9.66213 -9.11500 -8.18538 -6.29428 1.40933 1.41732 1.54706 1.57680 2.00794 2.41380 3.08643 3.14922 3.44749 3.72331 3.82247 3.95117 4.14667 4.17629 4.21214 4.26825 4.35653 4.37924 4.49019 4.53559 4.59803 4.65416 4.70713 4.71352 4.74248 4.77860 4.85562 4.91510 4.96707 4.99622 5.02829 5.08257 5.13306 5.18464 5.27365 5.33418 5.35781 5.48943 5.64383 5.70291 5.81445 6.14569 6.35561 6.36141 6.39448 6.88156 7.15260 7.39542 8.93710 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032572 B = 0.003101 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.427285 B = 9027.158926 C = 9488.937976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.122 3.878 3 C -0.155 4.155 4 N -0.608 5.608 5 C 0.063 3.937 6 C 0.518 3.482 7 O -0.585 6.585 8 C -0.097 4.097 9 C -0.087 4.087 10 C 0.059 3.941 11 N -0.558 5.558 12 C 0.080 3.920 13 C 0.037 3.963 14 C -0.542 4.542 15 H 0.060 0.940 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.965 3.035 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.277 1.277 22 C 0.058 3.942 23 C -0.103 4.103 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.025 0.975 41 H -0.013 1.013 42 H -0.001 1.001 43 H 0.263 0.737 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.970 4.943 -10.529 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.019 3.981 3 C -0.213 4.213 4 N -0.340 5.340 5 C -0.079 4.079 6 C 0.307 3.693 7 O -0.465 6.465 8 C -0.119 4.119 9 C -0.125 4.125 10 C -0.069 4.069 11 N -0.283 5.283 12 C -0.047 4.047 13 C -0.001 4.001 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.790 3.210 19 H -0.186 1.186 20 H -0.206 1.206 21 H -0.202 1.202 22 C -0.070 4.070 23 C -0.140 4.140 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.006 0.994 42 H 0.017 0.983 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.374 5.058 -11.373 23.875 hybrid contribution 0.449 -0.520 1.138 1.329 sum -19.926 4.538 -10.235 22.856 Atomic orbital electron populations 1.22080 0.92957 1.02159 1.03837 1.21169 0.95511 0.93514 0.87920 1.22090 1.00648 0.94734 1.03795 1.48048 1.49996 1.27448 1.08546 1.22220 1.02396 1.01037 0.82222 1.20949 0.77229 0.80420 0.90675 1.90645 1.59274 1.67032 1.29538 1.21333 0.99746 0.96409 0.94367 1.21301 0.98650 0.96116 0.96475 1.22093 0.95750 0.94595 0.94433 1.61911 1.31806 1.09977 1.24594 1.21944 0.95679 0.96970 0.90104 1.18926 0.93118 0.94317 0.93724 1.21661 1.21107 1.00726 1.14605 0.92222 1.25949 0.97584 0.95512 1.00644 1.70111 1.32539 1.12611 1.41871 0.85397 0.78086 0.78906 0.78618 1.18588 1.20560 1.20242 1.22060 0.95453 0.93107 0.96350 1.21758 0.98853 0.97880 0.95558 0.90544 0.90084 0.93362 0.91042 0.90706 0.94093 0.90043 0.91374 0.88638 0.89680 0.86501 0.92971 0.90464 0.90780 0.93856 0.92193 0.95718 0.99414 0.98272 0.92802 0.93785 0.92051 0.93059 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.17 71.98 0.66 -1.10 16 2 C 0.12 2.08 3.25 44.99 0.15 2.23 16 3 C -0.15 -2.12 9.19 71.98 0.66 -1.46 16 4 N -0.61 -11.44 2.76 -822.59 -2.27 -13.71 16 5 C 0.06 0.74 7.87 127.77 1.00 1.74 16 6 C 0.52 13.34 7.08 87.66 0.62 13.96 16 7 O -0.58 -19.82 15.31 -3.03 -0.05 -19.86 16 8 C -0.10 -2.29 1.78 -11.46 -0.02 -2.31 16 9 C -0.09 -2.41 4.68 30.65 0.14 -2.26 16 10 C 0.06 1.73 5.46 86.32 0.47 2.20 16 11 N -0.56 -20.32 4.66 -896.37 -4.17 -24.50 16 12 C 0.08 3.42 4.90 86.31 0.42 3.84 16 13 C 0.04 1.96 4.90 29.85 0.15 2.11 16 14 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 15 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 16 C 0.00 0.06 5.46 84.65 0.46 0.52 16 17 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 18 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 C 0.06 1.84 5.29 86.32 0.46 2.30 16 23 C -0.10 -2.60 5.00 30.65 0.15 -2.44 16 24 H 0.08 0.63 6.66 -2.38 -0.02 0.61 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 1.64 6.90 -2.39 -0.02 1.63 16 28 H 0.07 0.79 7.67 -2.39 -0.02 0.77 16 29 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.77 7.01 -2.38 -0.02 0.75 16 32 H 0.10 0.68 6.43 -2.39 -0.02 0.67 16 33 H 0.08 0.89 5.99 -2.39 -0.01 0.87 16 34 H 0.12 2.17 7.40 -2.39 -0.02 2.15 16 35 H 0.05 1.71 8.04 -2.38 -0.02 1.69 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.07 2.17 8.01 -2.39 -0.02 2.15 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 39 H 0.06 2.53 7.99 -2.39 -0.02 2.51 16 40 H 0.02 1.01 8.12 -2.39 -0.02 1.00 16 41 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.00 -0.06 6.43 -2.39 -0.02 -0.07 16 43 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 45 H 0.06 2.31 6.21 -2.39 -0.01 2.29 16 46 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.11 2.00 4.65 -2.39 -0.01 1.99 16 Total: -1.00 -71.93 356.85 2.30 -69.63 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.92 Total: 10.29 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 5.56 Total: -11.52 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -6.16 Total: -94.91 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.05 Total: -19.86 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.93 2.30 -69.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051903396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.851 kcal (2) G-P(sol) polarization free energy of solvation -71.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds