Wall clock time and date at job start Tue Mar 31 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47231 * 2 1 4 4 H 1.08997 * 109.47102 * 56.79341 * 3 2 1 5 5 N 1.46900 * 109.46807 * 296.79047 * 3 2 1 6 6 C 1.46897 * 111.00456 * 294.43264 * 5 3 2 7 7 C 1.50695 * 109.47390 * 175.66461 * 6 5 3 8 8 O 1.21287 * 120.00136 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00336 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00347 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47015 * 180.02562 * 10 9 7 12 12 H 1.07991 * 120.00417 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99858 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99482 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99945 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47225 * 59.99707 * 15 13 11 17 17 H 1.48503 * 109.47121 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47112 * 299.99564 * 15 13 11 19 19 C 1.53004 * 109.46980 * 176.79298 * 3 2 1 20 20 C 1.52990 * 109.47151 * 299.99810 * 19 3 2 21 21 C 1.52995 * 109.47112 * 180.02562 * 20 19 3 22 22 C 1.53000 * 109.47161 * 60.00103 * 21 20 19 23 23 C 1.52999 * 109.46984 * 299.99802 * 22 21 20 24 24 C 1.53004 * 109.47048 * 60.00304 * 23 22 21 25 25 H 1.09003 * 109.47162 * 176.10298 * 1 2 3 26 26 H 1.09003 * 109.46762 * 296.09819 * 1 2 3 27 27 H 1.09000 * 109.47522 * 56.10281 * 1 2 3 28 28 H 1.09010 * 109.46959 * 239.99898 * 2 1 3 29 29 H 1.09003 * 109.47518 * 120.00567 * 2 1 3 30 30 H 1.00900 * 110.99819 * 170.47491 * 5 3 2 31 31 H 1.09005 * 109.46768 * 295.66134 * 6 5 3 32 32 H 1.09000 * 109.47403 * 55.66089 * 6 5 3 33 33 H 0.97005 * 119.99384 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.46940 * 300.00037 * 10 9 7 35 35 H 1.09000 * 109.47098 * 59.99910 * 10 9 7 36 36 H 0.97000 * 119.99177 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.47017 * 60.00468 * 19 3 2 38 38 H 1.08997 * 109.47308 * 300.00188 * 20 19 3 39 39 H 1.08999 * 109.47200 * 60.00093 * 20 19 3 40 40 H 1.09004 * 109.47383 * 299.99973 * 21 20 19 41 41 H 1.09000 * 109.47386 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.47586 * 180.02562 * 22 21 20 43 43 H 1.08997 * 109.47102 * 60.00107 * 22 21 20 44 44 H 1.08997 * 109.47451 * 300.00092 * 23 22 21 45 45 H 1.09008 * 109.46734 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.47126 * 179.97438 * 24 23 22 47 47 H 1.08997 * 109.47167 * 59.99615 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 0.8598 5 7 1.6146 2.1122 -1.2364 6 6 2.2543 1.5049 -2.4110 7 6 1.7149 2.1451 -3.6640 8 8 0.8793 3.0207 -3.5862 9 7 2.1609 1.7446 -4.8712 10 6 1.6360 2.3665 -6.0894 11 6 2.2924 1.7436 -7.2943 12 1 3.0273 0.9628 -7.1657 13 6 1.9555 2.1712 -8.5611 14 7 1.0608 3.1224 -8.7177 15 14 2.7696 1.3995 -10.0547 16 1 2.4805 -0.0569 -10.0789 17 1 2.2375 2.0299 -11.2895 18 1 4.2377 1.6117 -9.9832 19 6 3.5679 1.4432 0.0807 20 6 4.0109 0.7457 1.3683 21 6 5.5387 0.7469 1.4493 22 6 6.0482 2.1896 1.4495 23 6 5.6052 2.8871 0.1619 24 6 4.0773 2.8859 0.0809 25 1 -0.3633 -1.0253 -0.0698 26 1 -0.3633 0.4521 0.9229 27 1 -0.3634 0.5731 -0.8530 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.8023 3.1027 -1.1940 31 1 3.3320 1.6602 -2.3587 32 1 2.0417 0.4360 -2.4286 33 1 2.8289 1.0440 -4.9334 34 1 0.5585 2.2105 -6.1417 35 1 1.8479 3.4356 -6.0718 36 1 0.8235 3.4229 -9.6089 37 1 3.9774 0.9130 -0.7792 38 1 3.6014 1.2758 2.2281 39 1 3.6475 -0.2820 1.3683 40 1 5.9486 0.2170 0.5894 41 1 5.8543 0.2504 2.3668 42 1 7.1367 2.1906 1.5068 43 1 5.6384 2.7195 2.3093 44 1 6.0151 2.3572 -0.6979 45 1 5.9679 3.9151 0.1623 46 1 3.7617 3.3833 -0.8363 47 1 3.6675 3.4158 0.9407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052339908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:42 Heat of formation + Delta-G solvation = -74.514872 kcal Electronic energy + Delta-G solvation = -22945.644396 eV Core-core repulsion = 19740.579074 eV Total energy + Delta-G solvation = -3205.065322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93709 -38.49032 -36.30417 -34.11190 -32.44868 -32.23165 -30.86513 -30.75042 -28.04279 -26.27359 -24.80042 -22.87392 -22.39441 -22.04106 -20.15916 -20.03335 -19.17261 -17.44633 -16.36603 -15.90636 -15.46762 -14.99047 -14.69014 -14.48655 -14.44657 -14.30381 -14.10449 -13.74291 -13.35632 -13.11412 -12.76365 -12.54547 -12.35517 -12.18518 -12.17068 -11.87796 -11.58301 -11.35254 -11.26389 -11.22407 -11.00766 -10.98624 -10.84629 -10.75134 -10.53801 -10.30913 -10.29363 -10.05236 -9.39009 -8.97364 -8.70734 -8.20518 -7.81885 -6.14785 -4.21701 3.26021 3.30772 3.32277 3.45789 3.89899 4.32217 4.37371 4.49965 4.51084 4.62843 4.81140 4.99707 5.08317 5.14292 5.15545 5.21035 5.30216 5.31567 5.36584 5.39630 5.45049 5.52183 5.56332 5.60420 5.68222 5.75630 5.79422 5.88340 5.91434 5.94801 5.96794 6.04839 6.07673 6.14433 6.19714 6.32363 6.50057 7.02885 7.35502 7.47399 7.50247 7.55486 7.70319 7.99849 8.68025 8.81846 9.17631 9.45160 10.95417 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.003431 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.093727 B = 8158.186533 C = 8849.922254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.093 3.907 4 H 0.082 0.918 5 N -0.659 5.659 6 C 0.035 3.965 7 C 0.496 3.504 8 O -0.544 6.544 9 N -0.716 5.716 10 C 0.252 3.748 11 C -0.544 4.544 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.886 5.886 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.124 4.124 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.118 4.118 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.349 0.651 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.389 0.611 34 H 0.026 0.974 35 H 0.025 0.975 36 H 0.266 0.734 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.301 -5.797 21.683 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.018 4.018 4 H 0.100 0.900 5 N -0.291 5.291 6 C -0.098 4.098 7 C 0.280 3.720 8 O -0.421 6.421 9 N -0.365 5.365 10 C 0.131 3.869 11 C -0.582 4.582 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.156 4.156 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.221 0.779 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.984 -5.388 21.487 23.227 hybrid contribution 1.716 -0.385 -0.892 1.972 sum 8.700 -5.772 20.594 23.090 Atomic orbital electron populations 1.21679 0.95160 1.00896 1.02658 1.21647 0.96910 0.95424 1.01540 1.21707 0.91504 0.95779 0.92762 0.90011 1.60227 1.60742 1.07914 1.00187 1.21913 0.97058 1.00578 0.90241 1.20428 0.82881 0.83776 0.84929 1.90659 1.32695 1.31685 1.87104 1.46448 1.43114 1.40119 1.06858 1.19061 0.94941 0.93650 0.79273 1.21200 1.24624 1.21578 0.90790 0.92006 1.24956 0.95016 0.94920 0.99132 1.69973 1.31216 1.27804 1.23306 0.86479 0.79551 0.79389 0.81507 1.20067 1.21069 1.20096 1.21963 0.97257 0.96451 0.98780 1.21581 0.95367 1.00554 0.97394 1.21540 0.95998 0.96678 1.01533 1.21528 1.00090 0.96001 0.97990 1.21508 0.95799 1.00411 0.97911 1.21606 0.95690 0.96304 1.01957 0.93708 0.93427 0.90877 0.92068 0.91811 0.83085 0.92677 0.88584 0.77930 0.95607 0.95691 0.92410 0.90760 0.92086 0.91622 0.92100 0.92300 0.92350 0.92182 0.92024 0.92105 0.91989 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.83 37.16 0.37 -1.23 16 2 C -0.12 -1.15 5.03 -26.73 -0.13 -1.28 16 3 C 0.09 0.94 2.13 -67.71 -0.14 0.79 16 4 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 5 N -0.66 -8.75 5.08 -107.99 -0.55 -9.30 16 6 C 0.03 0.49 5.20 -4.98 -0.03 0.46 16 7 C 0.50 9.91 7.88 -10.99 -0.09 9.82 16 8 O -0.54 -13.21 16.30 5.55 0.09 -13.12 16 9 N -0.72 -15.16 5.55 -61.47 -0.34 -15.50 16 10 C 0.25 6.75 5.43 -5.20 -0.03 6.72 16 11 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 12 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 15 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 C -0.12 -1.11 1.25 -90.62 -0.11 -1.22 16 20 C -0.11 -0.85 4.85 -26.74 -0.13 -0.98 16 21 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 22 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 23 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 24 C -0.12 -1.09 4.79 -26.73 -0.13 -1.22 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.99 7.59 -51.93 -0.39 0.59 16 28 H 0.06 0.63 6.31 -51.92 -0.33 0.30 16 29 H 0.06 0.53 6.26 -51.93 -0.33 0.20 16 30 H 0.35 4.85 7.28 -39.29 -0.29 4.56 16 31 H 0.06 0.69 6.20 -51.93 -0.32 0.37 16 32 H 0.10 1.25 6.20 -51.93 -0.32 0.93 16 33 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 0.73 6.43 -51.93 -0.33 0.39 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.48 6.36 -51.93 -0.33 0.15 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 46 H 0.06 0.66 6.61 -51.93 -0.34 0.32 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -31.26 359.29 -9.34 -40.60 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.35 Total: 6.51 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.32 Total: -4.94 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.15 Total: -50.39 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.26 -9.34 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052339908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.915 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds