Wall clock time and date at job start Tue Mar 31 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47231 * 2 1 4 4 H 1.08997 * 109.47102 * 56.79341 * 3 2 1 5 5 N 1.46900 * 109.46807 * 296.79047 * 3 2 1 6 6 C 1.46897 * 111.00456 * 294.43264 * 5 3 2 7 7 C 1.50695 * 109.47390 * 175.66461 * 6 5 3 8 8 O 1.21287 * 120.00136 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00336 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00347 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47015 * 180.02562 * 10 9 7 12 12 H 1.07991 * 120.00417 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99858 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99482 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99945 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47225 * 59.99707 * 15 13 11 17 17 H 1.48503 * 109.47121 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47112 * 299.99564 * 15 13 11 19 19 C 1.53004 * 109.46980 * 176.79298 * 3 2 1 20 20 C 1.52990 * 109.47151 * 299.99810 * 19 3 2 21 21 C 1.52995 * 109.47112 * 180.02562 * 20 19 3 22 22 C 1.53000 * 109.47161 * 60.00103 * 21 20 19 23 23 C 1.52999 * 109.46984 * 299.99802 * 22 21 20 24 24 C 1.53004 * 109.47048 * 60.00304 * 23 22 21 25 25 H 1.09003 * 109.47162 * 176.10298 * 1 2 3 26 26 H 1.09003 * 109.46762 * 296.09819 * 1 2 3 27 27 H 1.09000 * 109.47522 * 56.10281 * 1 2 3 28 28 H 1.09010 * 109.46959 * 239.99898 * 2 1 3 29 29 H 1.09003 * 109.47518 * 120.00567 * 2 1 3 30 30 H 1.00900 * 110.99819 * 170.47491 * 5 3 2 31 31 H 1.09005 * 109.46768 * 295.66134 * 6 5 3 32 32 H 1.09000 * 109.47403 * 55.66089 * 6 5 3 33 33 H 0.97005 * 119.99384 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.46940 * 300.00037 * 10 9 7 35 35 H 1.09000 * 109.47098 * 59.99910 * 10 9 7 36 36 H 0.97000 * 119.99177 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.47017 * 60.00468 * 19 3 2 38 38 H 1.08997 * 109.47308 * 300.00188 * 20 19 3 39 39 H 1.08999 * 109.47200 * 60.00093 * 20 19 3 40 40 H 1.09004 * 109.47383 * 299.99973 * 21 20 19 41 41 H 1.09000 * 109.47386 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.47586 * 180.02562 * 22 21 20 43 43 H 1.08997 * 109.47102 * 60.00107 * 22 21 20 44 44 H 1.08997 * 109.47451 * 300.00092 * 23 22 21 45 45 H 1.09008 * 109.46734 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.47126 * 179.97438 * 24 23 22 47 47 H 1.08997 * 109.47167 * 59.99615 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 0.8598 5 7 1.6146 2.1122 -1.2364 6 6 2.2543 1.5049 -2.4110 7 6 1.7149 2.1451 -3.6640 8 8 0.8793 3.0207 -3.5862 9 7 2.1609 1.7446 -4.8712 10 6 1.6360 2.3665 -6.0894 11 6 2.2924 1.7436 -7.2943 12 1 3.0273 0.9628 -7.1657 13 6 1.9555 2.1712 -8.5611 14 7 1.0608 3.1224 -8.7177 15 14 2.7696 1.3995 -10.0547 16 1 2.4805 -0.0569 -10.0789 17 1 2.2375 2.0299 -11.2895 18 1 4.2377 1.6117 -9.9832 19 6 3.5679 1.4432 0.0807 20 6 4.0109 0.7457 1.3683 21 6 5.5387 0.7469 1.4493 22 6 6.0482 2.1896 1.4495 23 6 5.6052 2.8871 0.1619 24 6 4.0773 2.8859 0.0809 25 1 -0.3633 -1.0253 -0.0698 26 1 -0.3633 0.4521 0.9229 27 1 -0.3634 0.5731 -0.8530 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.8023 3.1027 -1.1940 31 1 3.3320 1.6602 -2.3587 32 1 2.0417 0.4360 -2.4286 33 1 2.8289 1.0440 -4.9334 34 1 0.5585 2.2105 -6.1417 35 1 1.8479 3.4356 -6.0718 36 1 0.8235 3.4229 -9.6089 37 1 3.9774 0.9130 -0.7792 38 1 3.6014 1.2758 2.2281 39 1 3.6475 -0.2820 1.3683 40 1 5.9486 0.2170 0.5894 41 1 5.8543 0.2504 2.3668 42 1 7.1367 2.1906 1.5068 43 1 5.6384 2.7195 2.3093 44 1 6.0151 2.3572 -0.6979 45 1 5.9679 3.9151 0.1623 46 1 3.7617 3.3833 -0.8363 47 1 3.6675 3.4158 0.9407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052339908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:41 Heat of formation + Delta-G solvation = -95.312258 kcal Electronic energy + Delta-G solvation = -22946.546239 eV Core-core repulsion = 19740.579074 eV Total energy + Delta-G solvation = -3205.967165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.95857 -39.93054 -37.19126 -36.08192 -34.33369 -33.35880 -31.63221 -31.45049 -29.79095 -27.70315 -25.79630 -24.43336 -23.46479 -22.73630 -21.61880 -20.80144 -20.29109 -19.03759 -17.86411 -17.21684 -17.02702 -16.41764 -16.13853 -15.75843 -15.33067 -15.14051 -14.99836 -14.88189 -14.58462 -14.21334 -14.09538 -13.80117 -13.78198 -13.38404 -13.07955 -13.04464 -12.91439 -12.87236 -12.66507 -12.23893 -12.09514 -12.01153 -11.94392 -11.79393 -11.51821 -11.44820 -11.29510 -11.01990 -10.79014 -10.77583 -10.65284 -9.80715 -9.21021 -8.28982 -6.45931 1.42769 1.47098 1.55300 1.81679 2.30654 2.53059 3.05630 3.38170 3.65934 3.80816 3.87322 4.02147 4.10444 4.28224 4.32625 4.36726 4.44301 4.45256 4.50121 4.65364 4.66855 4.67965 4.72495 4.78119 4.88503 5.02350 5.10014 5.11753 5.17642 5.22910 5.24480 5.26871 5.28280 5.33352 5.40563 5.44129 5.49163 5.49756 5.58625 5.62843 5.70410 5.85360 6.08817 6.41503 6.65310 6.96201 7.23751 7.54165 8.83111 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.003431 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.093727 B = 8158.186533 C = 8849.922254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C 0.097 3.903 4 H 0.086 0.914 5 N -0.675 5.675 6 C 0.055 3.945 7 C 0.492 3.508 8 O -0.591 6.591 9 N -0.711 5.711 10 C 0.268 3.732 11 C -0.557 4.557 12 H 0.084 0.916 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.985 3.015 16 H -0.262 1.262 17 H -0.285 1.285 18 H -0.261 1.261 19 C -0.117 4.117 20 C -0.107 4.107 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.117 4.117 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.343 0.657 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.407 0.593 34 H -0.016 1.016 35 H -0.014 1.014 36 H 0.269 0.731 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.043 0.957 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.350 -8.030 22.771 26.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.012 4.012 4 H 0.105 0.895 5 N -0.306 5.306 6 C -0.077 4.077 7 C 0.279 3.721 8 O -0.472 6.472 9 N -0.361 5.361 10 C 0.145 3.855 11 C -0.595 4.595 12 H 0.102 0.898 13 C -0.197 4.197 14 N -0.570 5.570 15 Si 0.808 3.192 16 H -0.186 1.186 17 H -0.211 1.211 18 H -0.186 1.186 19 C -0.137 4.137 20 C -0.145 4.145 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.155 4.155 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.163 0.837 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.242 0.758 34 H 0.002 0.998 35 H 0.004 0.996 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.067 -7.662 22.620 25.545 hybrid contribution 1.022 0.367 -1.147 1.580 sum 10.089 -7.296 21.473 24.821 Atomic orbital electron populations 1.21643 0.96156 1.00860 1.01564 1.21667 0.95934 0.95118 1.02551 1.21758 0.92467 0.95803 0.91176 0.89547 1.60227 1.61460 1.07847 1.01108 1.21758 0.97852 1.00685 0.87359 1.21521 0.81689 0.82823 0.86088 1.90634 1.34835 1.33878 1.87842 1.46193 1.43597 1.40488 1.05847 1.18491 0.92841 0.91995 0.82135 1.21600 1.24943 1.22001 0.90958 0.89802 1.26090 0.95413 0.95199 1.02954 1.70143 1.33002 1.29580 1.24285 0.85199 0.78784 0.78698 0.76488 1.18620 1.21100 1.18589 1.21870 0.96012 0.96230 0.99553 1.21560 0.95621 1.00834 0.96508 1.21537 0.95689 0.96421 1.01989 1.21518 1.00476 0.96144 0.97284 1.21508 0.95243 1.00479 0.98435 1.21584 0.96200 0.96503 1.01171 0.92920 0.92748 0.94037 0.92275 0.89486 0.83733 0.90296 0.86633 0.75767 0.99781 0.99649 0.92254 0.91200 0.91655 0.90741 0.92397 0.91181 0.91824 0.91889 0.92604 0.92291 0.93809 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.83 71.98 0.71 -2.24 16 2 C -0.12 -1.96 5.03 30.59 0.15 -1.81 16 3 C 0.10 1.79 2.13 44.92 0.10 1.88 16 4 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 5 N -0.68 -17.57 5.08 -495.58 -2.52 -20.09 16 6 C 0.06 1.51 5.20 85.56 0.44 1.95 16 7 C 0.49 20.03 7.88 87.65 0.69 20.72 16 8 O -0.59 -30.05 16.30 -3.05 -0.05 -30.10 16 9 N -0.71 -30.53 5.55 -466.78 -2.59 -33.12 16 10 C 0.27 15.04 5.43 85.63 0.46 15.51 16 11 C -0.56 -30.68 9.28 25.60 0.24 -30.45 16 12 H 0.08 4.14 7.60 -2.92 -0.02 4.12 16 13 C 0.00 0.17 5.46 84.66 0.46 0.63 16 14 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 15 Si 0.99 42.55 29.54 68.60 2.03 44.58 16 16 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 17 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 18 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 19 C -0.12 -1.82 1.25 -10.79 -0.01 -1.83 16 20 C -0.11 -1.32 4.85 30.59 0.15 -1.17 16 21 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 22 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 23 C -0.12 -1.89 5.92 30.60 0.18 -1.71 16 24 C -0.12 -2.01 4.79 30.60 0.15 -1.86 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.04 1.11 7.59 -2.39 -0.02 1.09 16 28 H 0.06 1.05 6.31 -2.38 -0.02 1.03 16 29 H 0.09 1.12 6.26 -2.39 -0.01 1.11 16 30 H 0.34 9.62 7.28 -89.69 -0.65 8.97 16 31 H 0.08 1.82 6.20 -2.38 -0.01 1.81 16 32 H 0.12 2.76 6.20 -2.39 -0.01 2.74 16 33 H 0.41 14.36 8.32 -92.70 -0.77 13.58 16 34 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 35 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.07 1.18 6.43 -2.38 -0.02 1.16 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.81 6.36 -2.39 -0.02 0.80 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.04 0.91 6.61 -2.39 -0.02 0.89 16 47 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.54 359.29 0.76 -69.78 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -0.47 Total: 28.57 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 4.08 Total: -2.96 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -4.82 Total: -109.86 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.05 Total: -30.10 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.54 0.76 -69.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052339908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.535 kcal (2) G-P(sol) polarization free energy of solvation -70.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds