Wall clock time and date at job start Tue Mar 31 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46720 * 2 1 4 4 H 1.08992 * 109.47369 * 304.38381 * 3 2 1 5 5 N 1.46899 * 109.46896 * 64.38482 * 3 2 1 6 6 C 1.46902 * 110.99887 * 218.82193 * 5 3 2 7 7 C 1.50704 * 109.47018 * 173.80109 * 6 5 3 8 8 O 1.21277 * 119.99973 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99771 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99790 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.46798 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00445 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99664 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99865 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99955 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46884 * 90.00728 * 15 13 11 17 17 H 1.48504 * 109.47237 * 210.00355 * 15 13 11 18 18 H 1.48499 * 109.47511 * 330.00556 * 15 13 11 19 19 C 1.52996 * 109.46755 * 184.38280 * 3 2 1 20 20 C 1.53001 * 109.47338 * 297.50700 * 19 3 2 21 21 C 1.52997 * 109.47035 * 179.97438 * 20 19 3 22 22 C 1.53003 * 109.47061 * 60.00825 * 21 20 19 23 23 C 1.53006 * 109.46829 * 299.99571 * 22 21 20 24 24 C 1.52997 * 109.47034 * 59.99805 * 23 22 21 25 25 H 1.09005 * 109.46918 * 181.57976 * 1 2 3 26 26 H 1.08998 * 109.47172 * 301.57461 * 1 2 3 27 27 H 1.09004 * 109.47678 * 61.57887 * 1 2 3 28 28 H 1.08995 * 109.46833 * 240.00606 * 2 1 3 29 29 H 1.08997 * 109.46970 * 120.00171 * 2 1 3 30 30 H 1.00907 * 111.00097 * 94.87027 * 5 3 2 31 31 H 1.09005 * 109.46721 * 293.79530 * 6 5 3 32 32 H 1.08987 * 109.47068 * 53.79752 * 6 5 3 33 33 H 0.96997 * 120.00012 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.47110 * 299.99867 * 10 9 7 35 35 H 1.09001 * 109.47223 * 60.00175 * 10 9 7 36 36 H 0.96996 * 119.99786 * 179.97438 * 14 13 11 37 37 H 1.08995 * 109.47345 * 57.51218 * 19 3 2 38 38 H 1.08995 * 109.47325 * 300.00530 * 20 19 3 39 39 H 1.08995 * 109.46764 * 60.00613 * 20 19 3 40 40 H 1.08995 * 109.47686 * 300.00541 * 21 20 19 41 41 H 1.09006 * 109.47168 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.47502 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.47562 * 59.99189 * 22 21 20 44 44 H 1.08999 * 109.46737 * 300.00124 * 23 22 21 45 45 H 1.08998 * 109.47215 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.47307 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.47099 * 60.00540 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6139 1.9785 -0.8480 5 7 1.6385 2.1037 1.2489 6 6 1.2447 3.4975 1.0036 7 6 0.6970 4.0957 2.2738 8 8 0.6400 3.4267 3.2837 9 7 0.2697 5.3739 2.2871 10 6 -0.2632 5.9552 3.5218 11 6 -0.6671 7.3851 3.2701 12 1 -0.5393 7.8177 2.2888 13 6 -1.1989 8.1414 4.2930 14 7 -1.5519 9.3891 4.0733 15 14 -1.4194 7.3934 5.9904 16 1 -0.1918 7.6205 6.7946 17 1 -2.5783 8.0309 6.6656 18 1 -1.6633 5.9343 5.8606 19 6 3.5659 1.4440 -0.1102 20 6 4.1662 0.7459 1.1117 21 6 5.6922 0.7468 1.0011 22 6 6.1981 2.1893 0.9383 23 6 5.5978 2.8876 -0.2836 24 6 4.0718 2.8866 -0.1731 25 1 -0.3633 -1.0273 0.0283 26 1 -0.3633 0.5381 0.8755 27 1 -0.3634 0.4891 -0.9038 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.3737 2.0517 1.9381 31 1 2.1141 4.0689 0.6783 32 1 0.4792 3.5277 0.2283 33 1 0.3150 5.9088 1.4792 34 1 -1.1324 5.3836 3.8469 35 1 0.5022 5.9254 4.2973 36 1 -1.9264 9.9210 4.7928 37 1 3.8653 0.9146 -1.0147 38 1 3.8667 1.2752 2.0162 39 1 3.8062 -0.2820 1.1562 40 1 5.9913 0.2172 0.0966 41 1 6.1199 0.2498 1.8719 42 1 7.2853 2.1901 0.8600 43 1 5.8990 2.7190 1.8428 44 1 5.8969 2.3579 -1.1881 45 1 5.9585 3.9151 -0.3287 46 1 3.6441 3.3844 -1.0434 47 1 3.7727 3.4163 0.7313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052339911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:44 Heat of formation + Delta-G solvation = -90.482482 kcal Electronic energy + Delta-G solvation = -23045.036570 eV Core-core repulsion = 19839.278840 eV Total energy + Delta-G solvation = -3205.757730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.95485 -40.00683 -36.94007 -36.09011 -34.40245 -33.60059 -31.64575 -31.56938 -30.21245 -27.63007 -25.72821 -23.98918 -23.65238 -22.76267 -21.45511 -21.25496 -20.24627 -19.10091 -17.72443 -17.24891 -17.05174 -16.27806 -16.23211 -15.92867 -15.63913 -15.13091 -15.03082 -14.90591 -14.52111 -14.39682 -14.10555 -13.85664 -13.80957 -13.62791 -13.16326 -13.04343 -12.99109 -12.69500 -12.66789 -12.18822 -12.02422 -11.94434 -11.87040 -11.79091 -11.65850 -11.54773 -11.34340 -10.94065 -10.92482 -10.85172 -10.64513 -9.90484 -9.19013 -8.40848 -6.47565 1.31510 1.33973 1.46885 1.78563 2.27225 2.39511 2.94570 3.38144 3.67353 3.79291 3.83511 3.98894 4.16259 4.25937 4.29593 4.36731 4.43767 4.49841 4.53085 4.61605 4.65473 4.67549 4.75146 4.76672 4.80650 4.89324 5.02975 5.05491 5.09075 5.17517 5.21897 5.23796 5.25904 5.28343 5.31961 5.37925 5.41386 5.50077 5.54607 5.58600 5.62509 6.05246 6.16481 6.46014 6.53711 6.89685 7.15948 7.46610 8.73906 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.003653 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.474692 B = 7663.971812 C = 8307.792344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C 0.092 3.908 4 H 0.082 0.918 5 N -0.676 5.676 6 C 0.050 3.950 7 C 0.496 3.504 8 O -0.586 6.586 9 N -0.709 5.709 10 C 0.234 3.766 11 C -0.546 4.546 12 H 0.060 0.940 13 C 0.027 3.973 14 N -0.931 5.931 15 Si 0.937 3.063 16 H -0.265 1.265 17 H -0.272 1.272 18 H -0.263 1.263 19 C -0.103 4.103 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.122 4.122 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.344 0.656 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.408 0.592 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.272 0.728 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.042 -18.772 -12.891 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.017 4.017 4 H 0.100 0.900 5 N -0.311 5.311 6 C -0.082 4.082 7 C 0.283 3.717 8 O -0.466 6.466 9 N -0.360 5.360 10 C 0.110 3.890 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.173 4.173 14 N -0.570 5.570 15 Si 0.761 3.239 16 H -0.190 1.190 17 H -0.197 1.197 18 H -0.187 1.187 19 C -0.123 4.123 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.153 4.153 24 C -0.160 4.160 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.166 0.834 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.243 0.757 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.270 -19.300 -12.104 26.365 hybrid contribution 0.428 1.042 0.639 1.295 sum 13.698 -18.259 -11.465 25.543 Atomic orbital electron populations 1.21640 0.96377 1.00843 1.01302 1.21506 0.95657 0.95197 1.01921 1.21760 0.93174 0.95730 0.91027 0.90030 1.60237 1.46282 1.13258 1.11281 1.21950 1.01716 0.90785 0.93728 1.21446 0.77596 0.81226 0.91383 1.90624 1.57374 1.61449 1.37146 1.46037 1.62928 1.12658 1.14345 1.19043 0.93058 0.92427 0.84516 1.21303 1.42967 0.95496 0.98644 0.92194 1.25591 0.94062 0.94940 1.02748 1.69980 1.43151 1.09028 1.34801 0.85865 0.78835 0.79376 0.79852 1.18975 1.19717 1.18717 1.21735 0.94772 0.96188 0.99566 1.21613 0.95683 1.00781 0.97363 1.21498 0.95076 0.96454 1.02155 1.21566 1.00284 0.96198 0.98050 1.21491 0.94817 1.00488 0.98481 1.21744 0.96367 0.96469 1.01406 0.93035 0.93953 0.93016 0.90338 0.92366 0.83400 0.90054 0.86667 0.75689 0.97296 0.97322 0.91838 0.89190 0.93558 0.91057 0.91026 0.92114 0.91471 0.93524 0.90996 0.92266 0.91161 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.81 71.98 0.71 -2.11 16 2 C -0.10 -1.74 5.20 30.60 0.16 -1.58 16 3 C 0.09 1.59 1.96 44.92 0.09 1.68 16 4 H 0.08 1.30 7.53 -2.39 -0.02 1.28 16 5 N -0.68 -16.36 4.98 -495.59 -2.47 -18.83 16 6 C 0.05 1.27 5.58 85.56 0.48 1.75 16 7 C 0.50 18.58 7.88 87.66 0.69 19.27 16 8 O -0.59 -26.98 16.34 -3.02 -0.05 -27.03 16 9 N -0.71 -28.55 5.55 -466.79 -2.59 -31.14 16 10 C 0.23 11.67 4.50 85.63 0.38 12.06 16 11 C -0.55 -30.47 9.83 25.60 0.25 -30.22 16 12 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 13 C 0.03 1.54 5.47 84.66 0.46 2.00 16 14 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 15 Si 0.94 44.73 27.47 68.60 1.88 46.61 16 16 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.26 -12.56 6.54 99.48 0.65 -11.91 16 19 C -0.10 -1.49 1.98 -10.79 -0.02 -1.51 16 20 C -0.12 -1.85 4.66 30.59 0.14 -1.71 16 21 C -0.11 -1.60 5.92 30.59 0.18 -1.42 16 22 C -0.12 -1.86 5.92 30.60 0.18 -1.68 16 23 C -0.12 -1.64 5.92 30.60 0.18 -1.46 16 24 C -0.12 -1.90 4.17 30.59 0.13 -1.77 16 25 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.04 1.08 7.69 -2.39 -0.02 1.06 16 27 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.06 6.72 -2.39 -0.02 1.05 16 30 H 0.34 9.04 5.66 -89.69 -0.51 8.53 16 31 H 0.08 1.73 5.65 -2.38 -0.01 1.72 16 32 H 0.12 2.50 7.92 -2.39 -0.02 2.48 16 33 H 0.41 14.23 8.32 -92.71 -0.77 13.46 16 34 H 0.01 0.48 7.20 -2.39 -0.02 0.47 16 35 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.05 0.93 6.12 -2.39 -0.01 0.91 16 39 H 0.07 1.08 6.59 -2.39 -0.02 1.07 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.05 0.90 5.79 -2.39 -0.01 0.89 16 Total: -1.00 -67.40 356.32 0.71 -66.69 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -0.39 Total: 26.03 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 4.01 Total: -6.72 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -4.76 Total: -105.58 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.05 Total: -27.03 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -67.40 0.71 -66.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052339911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.790 kcal (2) G-P(sol) polarization free energy of solvation -67.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds