Wall clock time and date at job start Tue Mar 31 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 N 1.46488 * 109.46959 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00174 * 274.31674 * 4 3 2 6 6 H 1.07996 * 119.99667 * 337.84614 * 5 4 3 7 7 C 1.38811 * 120.00058 * 157.85303 * 5 4 3 8 8 N 1.31618 * 120.00239 * 7.72494 * 7 5 4 9 9 Si 1.86804 * 119.99768 * 187.72874 * 7 5 4 10 10 H 1.48509 * 109.46797 * 89.99484 * 9 7 5 11 11 H 1.48490 * 109.47059 * 209.99280 * 9 7 5 12 12 H 1.48502 * 109.47097 * 329.99795 * 9 7 5 13 13 C 1.46504 * 120.00037 * 94.32134 * 4 3 2 14 14 C 1.50706 * 109.46847 * 269.99443 * 13 4 3 15 15 O 1.21282 * 119.99662 * 0.02562 * 14 13 4 16 16 N 1.34773 * 119.99795 * 179.72568 * 14 13 4 17 17 C 1.46503 * 119.99836 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47082 * 274.99881 * 17 16 14 19 19 C 1.52995 * 109.47528 * 299.99854 * 18 17 16 20 20 C 1.53001 * 109.46957 * 300.00364 * 19 18 17 21 21 C 1.53000 * 109.47196 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.47372 * 59.99361 * 20 19 18 23 23 C 1.52993 * 109.47223 * 154.99545 * 17 16 14 24 24 H 1.08998 * 109.47578 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47253 * 300.00278 * 1 2 3 26 26 H 1.09001 * 109.47007 * 59.99981 * 1 2 3 27 27 H 1.09002 * 109.46763 * 239.99891 * 2 1 3 28 28 H 1.09001 * 109.47007 * 120.00019 * 2 1 3 29 29 H 1.09004 * 109.46786 * 59.99779 * 3 2 1 30 30 H 1.09002 * 109.46616 * 300.00446 * 3 2 1 31 31 H 0.96999 * 120.00131 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47302 * 149.99624 * 13 4 3 33 33 H 1.08993 * 109.47427 * 29.99280 * 13 4 3 34 34 H 0.96990 * 120.00200 * 359.97438 * 16 14 13 35 35 H 1.09006 * 109.46833 * 34.99623 * 17 16 14 36 36 H 1.09000 * 109.47116 * 60.00364 * 18 17 16 37 37 H 1.09004 * 109.47232 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47805 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.47060 * 59.99654 * 19 18 17 40 40 H 1.09003 * 109.47367 * 299.99752 * 20 19 18 41 41 H 1.08992 * 109.47101 * 299.99920 * 21 20 19 42 42 H 1.09000 * 109.46695 * 59.99934 * 21 20 19 43 43 H 1.08997 * 109.47074 * 179.97438 * 21 20 19 44 44 H 1.09000 * 109.47189 * 179.97438 * 22 20 19 45 45 H 1.09005 * 109.46561 * 60.00440 * 22 20 19 46 46 H 1.09002 * 109.47282 * 179.97438 * 23 17 16 47 47 H 1.09000 * 109.47420 * 300.00396 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1902 1.3530 1.1817 6 1 3.7103 1.6368 2.1066 7 6 5.5014 0.8977 1.1911 8 7 6.1366 0.6969 0.0560 9 14 6.3646 0.5700 2.8150 10 1 6.1342 -0.8394 3.2225 11 1 7.8219 0.8078 2.6578 12 1 5.8237 1.4809 3.8558 13 6 4.2369 1.5382 -1.2661 14 6 4.4879 0.1542 -1.8071 15 8 4.0937 -0.8164 -1.1961 16 7 5.1451 -0.0045 -2.9730 17 6 5.3886 -1.3499 -3.4993 18 6 6.6626 -1.9199 -2.8724 19 6 7.8483 -1.0159 -3.2153 20 6 8.0142 -0.9468 -4.7348 21 6 9.1996 -0.0423 -5.0778 22 6 6.7402 -0.3769 -5.3616 23 6 5.5545 -1.2809 -5.0186 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 7.0528 0.3784 0.0626 32 1 5.1894 2.0408 -1.0977 33 1 3.6476 2.1078 -1.9845 34 1 5.4562 0.7719 -3.4640 35 1 4.5438 -1.9940 -3.2548 36 1 6.5443 -1.9691 -1.7900 37 1 6.8435 -2.9211 -3.2636 38 1 8.7560 -1.4221 -2.7692 39 1 7.6671 -0.0148 -2.8238 40 1 8.1954 -1.9478 -5.1264 41 1 9.0181 0.9585 -4.6863 42 1 10.1074 -0.4481 -4.6311 43 1 9.3181 0.0065 -6.1602 44 1 6.8586 -0.3273 -6.4440 45 1 6.5591 0.6242 -4.9701 46 1 5.7361 -2.2819 -5.4101 47 1 4.6469 -0.8748 -5.4652 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058909783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:38 Heat of formation + Delta-G solvation = -39.660176 kcal Electronic energy + Delta-G solvation = -24350.660199 eV Core-core repulsion = 21147.106289 eV Total energy + Delta-G solvation = -3203.553909 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.31207 -37.43497 -35.41901 -33.32690 -32.77291 -30.67302 -30.47032 -30.24539 -27.03186 -25.55633 -25.39489 -22.31875 -22.16650 -20.88195 -20.24114 -19.60368 -18.33661 -16.85407 -15.95426 -15.21075 -14.87793 -14.70475 -14.12977 -13.98261 -13.90719 -13.60319 -13.35953 -12.97403 -12.77614 -12.59669 -12.38012 -12.02863 -11.87734 -11.54225 -11.47394 -11.28347 -11.20510 -11.00471 -10.90845 -10.82161 -10.70339 -10.47536 -10.21704 -10.16278 -9.99003 -9.82962 -9.74442 -9.63902 -9.47791 -8.65165 -8.09893 -7.79213 -6.68821 -5.71606 -3.10084 3.43713 3.49774 3.51856 4.34815 4.43806 4.66674 4.94209 4.97025 5.01990 5.36526 5.46168 5.55231 5.62501 5.64829 5.74010 5.80372 5.82556 5.88337 5.92491 5.92823 5.97029 6.04737 6.17303 6.22682 6.24060 6.32284 6.35254 6.37589 6.48487 6.60033 6.62312 6.66093 6.68171 6.78020 6.86092 6.93383 7.03840 7.21429 7.41429 7.53935 7.73707 7.82972 8.44405 8.86672 9.29515 9.86464 10.03007 10.38297 11.34827 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.006413 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.752897 B = 4365.232754 C = 5607.049789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.152 3.848 4 N -0.579 5.579 5 C -0.239 4.239 6 H 0.071 0.929 7 C 0.008 3.992 8 N -0.904 5.904 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.294 1.294 12 H -0.283 1.283 13 C 0.164 3.836 14 C 0.532 3.468 15 O -0.540 6.540 16 N -0.742 5.742 17 C 0.155 3.845 18 C -0.124 4.124 19 C -0.107 4.107 20 C -0.091 4.091 21 C -0.146 4.146 22 C -0.111 4.111 23 C -0.125 4.125 24 H 0.040 0.960 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.033 0.967 31 H 0.252 0.748 32 H 0.116 0.884 33 H 0.021 0.979 34 H 0.383 0.617 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -0.482 -11.652 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.026 3.974 4 N -0.298 5.298 5 C -0.368 4.368 6 H 0.089 0.911 7 C -0.188 4.188 8 N -0.551 5.551 9 Si 0.736 3.264 10 H -0.217 1.217 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.034 3.966 14 C 0.320 3.680 15 O -0.415 6.415 16 N -0.397 5.397 17 C 0.049 3.951 18 C -0.163 4.163 19 C -0.145 4.145 20 C -0.110 4.110 21 C -0.203 4.203 22 C -0.149 4.149 23 C -0.163 4.163 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.134 0.866 33 H 0.039 0.961 34 H 0.216 0.784 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.561 -1.195 -11.137 11.215 hybrid contribution 0.899 -0.282 0.653 1.146 sum 1.459 -1.476 -10.484 10.687 Atomic orbital electron populations 1.21789 0.98368 1.00112 1.00330 1.22157 0.92231 1.00508 1.03100 1.20895 0.84542 0.93930 0.98061 1.43751 0.99538 1.84189 1.02333 1.19197 0.95188 1.36255 0.86163 0.91085 1.24884 0.97847 0.99341 0.96740 1.69659 1.11344 1.50622 1.23491 0.86237 0.78313 0.78267 0.83538 1.21740 1.22035 1.20835 1.20730 0.98407 0.91579 0.85854 1.21947 0.74596 0.94071 0.77432 1.90474 1.52153 1.42123 1.56761 1.46264 1.61981 1.06291 1.25204 1.20542 0.96920 0.86536 0.91132 1.21825 0.94962 0.97270 1.02216 1.21481 0.97503 1.01660 0.93813 1.21152 0.94417 0.98725 0.96678 1.21821 0.97917 1.00100 1.00480 1.21553 0.94479 0.99406 0.99456 1.21802 0.98179 1.00111 0.96181 0.94066 0.93709 0.93874 0.91579 0.92385 0.94222 0.94810 0.93707 0.86601 0.96091 0.78398 0.90992 0.90822 0.93241 0.93176 0.90658 0.91987 0.92567 0.93070 0.93303 0.92561 0.91831 0.91620 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.14 -2.97 5.67 -26.73 -0.15 -3.12 16 3 C 0.15 3.28 5.72 -4.05 -0.02 3.26 16 4 N -0.58 -14.43 2.07 -174.61 -0.36 -14.79 16 5 C -0.24 -6.53 9.70 -15.06 -0.15 -6.67 16 6 H 0.07 1.93 7.84 -52.49 -0.41 1.52 16 7 C 0.01 0.23 5.41 -17.43 -0.09 0.14 16 8 N -0.90 -24.48 8.21 55.49 0.46 -24.03 16 9 Si 0.91 22.36 29.56 -169.99 -5.02 17.34 16 10 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.16 3.80 5.47 -5.19 -0.03 3.77 16 14 C 0.53 12.18 5.76 -10.98 -0.06 12.12 16 15 O -0.54 -14.50 13.55 5.56 0.08 -14.42 16 16 N -0.74 -13.59 4.23 -53.81 -0.23 -13.81 16 17 C 0.15 2.58 2.78 -67.94 -0.19 2.39 16 18 C -0.12 -2.12 5.60 -26.74 -0.15 -2.27 16 19 C -0.11 -1.64 5.05 -26.73 -0.13 -1.77 16 20 C -0.09 -1.12 2.72 -90.62 -0.25 -1.36 16 21 C -0.15 -1.61 9.19 37.16 0.34 -1.26 16 22 C -0.11 -1.29 5.03 -26.73 -0.13 -1.43 16 23 C -0.12 -1.58 5.61 -26.73 -0.15 -1.73 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.55 6.38 -51.93 -0.33 1.21 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 30 H 0.03 0.66 7.84 -51.93 -0.41 0.25 16 31 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.12 2.88 6.24 -51.93 -0.32 2.56 16 33 H 0.02 0.43 7.86 -51.93 -0.41 0.02 16 34 H 0.38 6.20 6.87 -40.82 -0.28 5.92 16 35 H 0.07 1.37 7.57 -51.93 -0.39 0.98 16 36 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.32 7.60 -51.93 -0.39 0.92 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.76 6.51 -51.93 -0.34 0.43 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -29.65 357.65 -9.26 -38.91 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -8.76 Total: 5.47 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.80 Total: -0.04 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.13 Total: -52.64 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.42 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.65 -9.26 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058909783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.755 kcal (2) G-P(sol) polarization free energy of solvation -29.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds