Wall clock time and date at job start Tue Mar 31 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 N 1.46488 * 109.46959 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00174 * 274.31674 * 4 3 2 6 6 H 1.07996 * 119.99667 * 337.84614 * 5 4 3 7 7 C 1.38811 * 120.00058 * 157.85303 * 5 4 3 8 8 N 1.31618 * 120.00239 * 7.72494 * 7 5 4 9 9 Si 1.86804 * 119.99768 * 187.72874 * 7 5 4 10 10 H 1.48509 * 109.46797 * 89.99484 * 9 7 5 11 11 H 1.48490 * 109.47059 * 209.99280 * 9 7 5 12 12 H 1.48502 * 109.47097 * 329.99795 * 9 7 5 13 13 C 1.46504 * 120.00037 * 94.32134 * 4 3 2 14 14 C 1.50706 * 109.46847 * 269.99443 * 13 4 3 15 15 O 1.21282 * 119.99662 * 0.02562 * 14 13 4 16 16 N 1.34773 * 119.99795 * 179.72568 * 14 13 4 17 17 C 1.46503 * 119.99836 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47082 * 274.99881 * 17 16 14 19 19 C 1.52995 * 109.47528 * 299.99854 * 18 17 16 20 20 C 1.53001 * 109.46957 * 300.00364 * 19 18 17 21 21 C 1.53000 * 109.47196 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.47372 * 59.99361 * 20 19 18 23 23 C 1.52993 * 109.47223 * 154.99545 * 17 16 14 24 24 H 1.08998 * 109.47578 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47253 * 300.00278 * 1 2 3 26 26 H 1.09001 * 109.47007 * 59.99981 * 1 2 3 27 27 H 1.09002 * 109.46763 * 239.99891 * 2 1 3 28 28 H 1.09001 * 109.47007 * 120.00019 * 2 1 3 29 29 H 1.09004 * 109.46786 * 59.99779 * 3 2 1 30 30 H 1.09002 * 109.46616 * 300.00446 * 3 2 1 31 31 H 0.96999 * 120.00131 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47302 * 149.99624 * 13 4 3 33 33 H 1.08993 * 109.47427 * 29.99280 * 13 4 3 34 34 H 0.96990 * 120.00200 * 359.97438 * 16 14 13 35 35 H 1.09006 * 109.46833 * 34.99623 * 17 16 14 36 36 H 1.09000 * 109.47116 * 60.00364 * 18 17 16 37 37 H 1.09004 * 109.47232 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47805 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.47060 * 59.99654 * 19 18 17 40 40 H 1.09003 * 109.47367 * 299.99752 * 20 19 18 41 41 H 1.08992 * 109.47101 * 299.99920 * 21 20 19 42 42 H 1.09000 * 109.46695 * 59.99934 * 21 20 19 43 43 H 1.08997 * 109.47074 * 179.97438 * 21 20 19 44 44 H 1.09000 * 109.47189 * 179.97438 * 22 20 19 45 45 H 1.09005 * 109.46561 * 60.00440 * 22 20 19 46 46 H 1.09002 * 109.47282 * 179.97438 * 23 17 16 47 47 H 1.09000 * 109.47420 * 300.00396 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1902 1.3530 1.1817 6 1 3.7103 1.6368 2.1066 7 6 5.5014 0.8977 1.1911 8 7 6.1366 0.6969 0.0560 9 14 6.3646 0.5700 2.8150 10 1 6.1342 -0.8394 3.2225 11 1 7.8219 0.8078 2.6578 12 1 5.8237 1.4809 3.8558 13 6 4.2369 1.5382 -1.2661 14 6 4.4879 0.1542 -1.8071 15 8 4.0937 -0.8164 -1.1961 16 7 5.1451 -0.0045 -2.9730 17 6 5.3886 -1.3499 -3.4993 18 6 6.6626 -1.9199 -2.8724 19 6 7.8483 -1.0159 -3.2153 20 6 8.0142 -0.9468 -4.7348 21 6 9.1996 -0.0423 -5.0778 22 6 6.7402 -0.3769 -5.3616 23 6 5.5545 -1.2809 -5.0186 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 7.0528 0.3784 0.0626 32 1 5.1894 2.0408 -1.0977 33 1 3.6476 2.1078 -1.9845 34 1 5.4562 0.7719 -3.4640 35 1 4.5438 -1.9940 -3.2548 36 1 6.5443 -1.9691 -1.7900 37 1 6.8435 -2.9211 -3.2636 38 1 8.7560 -1.4221 -2.7692 39 1 7.6671 -0.0148 -2.8238 40 1 8.1954 -1.9478 -5.1264 41 1 9.0181 0.9585 -4.6863 42 1 10.1074 -0.4481 -4.6311 43 1 9.3181 0.0065 -6.1602 44 1 6.8586 -0.3273 -6.4440 45 1 6.5591 0.6242 -4.9701 46 1 5.7361 -2.2819 -5.4101 47 1 4.6469 -0.8748 -5.4652 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058909783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:37 Heat of formation + Delta-G solvation = -55.746112 kcal Electronic energy + Delta-G solvation = -24351.357737 eV Core-core repulsion = 21147.106289 eV Total energy + Delta-G solvation = -3204.251448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75135 -39.04391 -37.18990 -34.76042 -34.58864 -32.44943 -31.82086 -31.62361 -28.70543 -27.22569 -26.75408 -23.95132 -23.49381 -22.15280 -21.78818 -21.27801 -19.74644 -18.79682 -17.58726 -17.07827 -16.41901 -16.13483 -15.86190 -15.52050 -15.22867 -15.05460 -14.67899 -14.60516 -14.35513 -13.94646 -13.72584 -13.69470 -13.21609 -13.08551 -12.92152 -12.80908 -12.73785 -12.52835 -12.33152 -12.26135 -12.18525 -12.07621 -11.96790 -11.81775 -11.70696 -11.31734 -11.22450 -10.98128 -10.86237 -10.67702 -10.03478 -9.42682 -8.64976 -7.79864 -5.17998 1.41079 1.46740 1.50709 2.47776 2.65882 2.92834 3.41518 3.77396 3.86080 3.91191 3.92202 4.28378 4.31319 4.37629 4.44944 4.52029 4.57706 4.66587 4.69934 4.73743 4.74646 4.80491 4.83401 4.93711 4.96647 5.00478 5.06812 5.15763 5.19716 5.22983 5.25935 5.30832 5.35725 5.44158 5.48149 5.48861 5.51869 5.57535 5.65968 5.68559 5.79810 6.20223 6.41747 7.14132 7.32582 7.91207 8.23634 8.36035 9.22224 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.006413 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.752897 B = 4365.232754 C = 5607.049789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.149 3.851 4 N -0.595 5.595 5 C -0.251 4.251 6 H 0.066 0.934 7 C -0.037 4.037 8 N -0.907 5.907 9 Si 0.954 3.046 10 H -0.307 1.307 11 H -0.293 1.293 12 H -0.270 1.270 13 C 0.163 3.837 14 C 0.533 3.467 15 O -0.585 6.585 16 N -0.727 5.727 17 C 0.153 3.847 18 C -0.118 4.118 19 C -0.100 4.100 20 C -0.085 4.085 21 C -0.143 4.143 22 C -0.108 4.108 23 C -0.113 4.113 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.019 0.981 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.242 0.758 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.396 0.604 35 H 0.044 0.956 36 H 0.016 0.984 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 0.073 -14.020 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C 0.024 3.976 4 N -0.315 5.315 5 C -0.381 4.381 6 H 0.084 0.916 7 C -0.232 4.232 8 N -0.554 5.554 9 Si 0.785 3.215 10 H -0.236 1.236 11 H -0.219 1.219 12 H -0.195 1.195 13 C 0.034 3.966 14 C 0.320 3.680 15 O -0.464 6.464 16 N -0.382 5.382 17 C 0.048 3.952 18 C -0.157 4.157 19 C -0.138 4.138 20 C -0.103 4.103 21 C -0.200 4.200 22 C -0.146 4.146 23 C -0.151 4.151 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.231 0.769 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.076 0.924 46 H 0.103 0.897 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.307 -0.606 -13.547 13.564 hybrid contribution 0.961 -0.471 1.381 1.747 sum 1.268 -1.078 -12.166 12.279 Atomic orbital electron populations 1.21680 0.94469 1.01290 1.02050 1.21957 0.95539 0.99482 0.99879 1.21050 0.82817 0.94285 0.99480 1.43954 1.00987 1.84381 1.02187 1.19358 0.95471 1.36131 0.87090 0.91568 1.25464 0.98718 1.00004 0.99026 1.69816 1.10696 1.50752 1.24123 0.85455 0.77497 0.77070 0.81450 1.23567 1.21937 1.19477 1.20708 0.97954 0.91911 0.86067 1.21881 0.74554 0.93419 0.78113 1.90456 1.54199 1.43325 1.58433 1.46020 1.60423 1.07780 1.23946 1.20650 0.95467 0.84815 0.94313 1.21734 0.96270 0.99075 0.98633 1.21398 0.96265 0.99396 0.96715 1.21110 0.95554 0.99996 0.93646 1.21791 0.97141 0.99214 1.01888 1.21564 0.93250 0.98570 1.01181 1.21739 0.99424 1.01772 0.92164 0.93238 0.92282 0.91771 0.94204 0.96224 0.93649 0.92268 0.94765 0.88576 0.93005 0.76876 0.93788 0.96501 0.91249 0.93583 0.93312 0.90640 0.93342 0.93142 0.91085 0.89554 0.92379 0.89723 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.91 71.98 0.71 -3.60 16 2 C -0.13 -5.49 5.67 30.60 0.17 -5.32 16 3 C 0.15 6.36 5.72 86.38 0.49 6.85 16 4 N -0.59 -30.06 2.07 -706.34 -1.46 -31.52 16 5 C -0.25 -13.99 9.70 84.03 0.81 -13.18 16 6 H 0.07 3.67 7.84 -2.91 -0.02 3.64 16 7 C -0.04 -2.08 5.41 84.86 0.46 -1.62 16 8 N -0.91 -50.89 8.21 21.65 0.18 -50.71 16 9 Si 0.95 47.25 29.56 68.60 2.03 49.27 16 10 H -0.31 -15.97 7.11 99.48 0.71 -15.27 16 11 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.16 7.62 5.47 85.63 0.47 8.09 16 14 C 0.53 25.03 5.76 87.66 0.50 25.53 16 15 O -0.59 -32.85 13.55 -3.04 -0.04 -32.89 16 16 N -0.73 -26.87 4.23 -442.54 -1.87 -28.74 16 17 C 0.15 5.11 2.78 44.99 0.13 5.24 16 18 C -0.12 -4.15 5.60 30.59 0.17 -3.98 16 19 C -0.10 -3.06 5.05 30.59 0.15 -2.90 16 20 C -0.08 -1.85 2.72 -10.79 -0.03 -1.88 16 21 C -0.14 -2.76 9.19 71.98 0.66 -2.10 16 22 C -0.11 -2.15 5.03 30.60 0.15 -1.99 16 23 C -0.11 -2.56 5.61 30.59 0.17 -2.39 16 24 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.90 6.38 -2.39 -0.02 1.88 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 1.86 8.08 -2.38 -0.02 1.84 16 30 H 0.06 2.20 7.84 -2.39 -0.02 2.18 16 31 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 32 H 0.10 4.87 6.24 -2.39 -0.01 4.86 16 33 H 0.05 2.06 7.86 -2.39 -0.02 2.04 16 34 H 0.40 12.59 6.87 -92.72 -0.64 11.95 16 35 H 0.04 1.72 7.57 -2.38 -0.02 1.71 16 36 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 1.74 7.60 -2.38 -0.02 1.72 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.06 1.23 6.51 -2.38 -0.02 1.22 16 46 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -67.83 357.65 4.15 -63.69 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.28 Total: 24.16 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 5.04 Total: 6.75 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -3.16 Total: -110.98 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -0.04 Total: -32.89 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -67.83 4.15 -63.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058909783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.939 kcal (2) G-P(sol) polarization free energy of solvation -67.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds