Wall clock time and date at job start Tue Mar 31 2020 05:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47224 * 2 1 4 4 C 1.50703 * 109.47259 * 120.00029 * 2 1 3 5 5 O 1.21285 * 119.99553 * 239.99955 * 4 2 1 6 6 N 1.34775 * 120.00041 * 60.00219 * 4 2 1 7 7 C 1.46497 * 119.99822 * 180.02562 * 6 4 2 8 8 C 1.53120 * 109.52222 * 154.99746 * 7 6 4 9 9 C 1.53039 * 109.27940 * 177.62283 * 8 7 6 10 10 N 1.46844 * 109.52178 * 300.81941 * 9 8 7 11 11 C 1.46901 * 111.00526 * 185.84060 * 10 9 8 12 12 C 1.52992 * 109.47859 * 170.00090 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 C 1.46848 * 111.20087 * 61.74385 * 10 9 8 23 23 C 1.53048 * 109.52064 * 298.25789 * 22 10 9 24 24 H 1.09002 * 109.46645 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47071 * 299.99832 * 1 2 3 26 26 H 1.08998 * 109.47157 * 60.00238 * 1 2 3 27 27 H 1.09007 * 109.47264 * 239.99866 * 2 1 3 28 28 H 1.08997 * 109.47492 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46919 * 300.00293 * 3 2 1 30 30 H 1.08997 * 109.47105 * 59.99592 * 3 2 1 31 31 H 0.97001 * 119.99636 * 359.97438 * 6 4 2 32 32 H 1.09002 * 109.52763 * 34.87282 * 7 6 4 33 33 H 1.09004 * 109.50479 * 57.67872 * 8 7 6 34 34 H 1.08998 * 109.50625 * 297.56185 * 8 7 6 35 35 H 1.09003 * 109.46575 * 180.80459 * 9 8 7 36 36 H 1.08995 * 109.45502 * 60.82603 * 9 8 7 37 37 H 1.09002 * 109.46980 * 49.99749 * 11 10 9 38 38 H 1.09001 * 109.46628 * 290.00171 * 11 10 9 39 39 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 40 40 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 42 42 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 43 43 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 44 44 H 1.08996 * 109.46339 * 58.26808 * 22 10 9 45 45 H 1.08994 * 109.46869 * 178.24483 * 22 10 9 46 46 H 1.08998 * 109.49998 * 299.23732 * 23 22 10 47 47 H 1.08994 * 109.50211 * 179.11499 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -0.1209 2.0288 6 7 1.7068 -2.0008 1.4437 7 6 2.1948 -2.6911 2.6402 8 6 1.2507 -3.8463 2.9851 9 6 1.7971 -4.5999 4.1999 10 7 3.1384 -5.1144 3.8956 11 6 3.6381 -5.9605 4.9875 12 6 4.9140 -6.6744 4.5369 13 6 5.4347 -7.5551 5.6744 14 6 6.6911 -8.2588 5.2302 15 1 7.0796 -8.0940 4.2361 16 6 7.3452 -9.1122 6.0934 17 7 6.8723 -9.3124 7.3041 18 14 8.9029 -9.9838 5.5429 19 1 10.0828 -9.1449 5.8737 20 1 9.0126 -11.2897 6.2415 21 1 8.8518 -10.2099 4.0762 22 6 4.0743 -4.0201 3.6074 23 6 3.5958 -3.2491 2.3749 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.1489 -2.4720 0.8054 32 1 2.2335 -1.9909 3.4746 33 1 1.1819 -4.5261 2.1358 34 1 0.2616 -3.4512 3.2167 35 1 1.1348 -5.4318 4.4394 36 1 1.8527 -3.9229 5.0522 37 1 2.8813 -6.6999 5.2497 38 1 3.8565 -5.3403 5.8568 39 1 5.6707 -5.9351 4.2747 40 1 4.6955 -7.2946 3.6675 41 1 4.6780 -8.2945 5.9370 42 1 5.6532 -6.9345 6.5435 43 1 7.3323 -9.9131 7.9111 44 1 4.1191 -3.3459 4.4627 45 1 5.0657 -4.4307 3.4165 46 1 3.5639 -3.9196 1.5161 47 1 4.2820 -2.4274 2.1707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060366480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:11 Heat of formation + Delta-G solvation = -68.529694 kcal Electronic energy + Delta-G solvation = -22292.505198 eV Core-core repulsion = 19087.699413 eV Total energy + Delta-G solvation = -3204.805786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.38111 -38.74964 -35.63354 -34.79189 -33.72678 -32.11361 -30.89684 -30.23196 -27.50163 -26.53089 -24.60986 -23.38946 -22.91340 -21.75263 -20.42392 -19.81922 -19.61539 -17.40487 -16.66209 -16.24753 -15.73237 -15.26355 -15.02563 -14.50448 -14.44044 -14.29955 -14.04825 -13.63545 -13.43473 -13.30591 -12.98455 -12.69968 -12.34626 -12.26241 -12.19035 -11.77313 -11.55884 -11.55386 -11.42213 -11.21737 -11.13742 -10.97650 -10.78911 -10.69564 -10.48131 -10.36159 -9.87616 -9.58574 -9.30112 -9.18026 -9.02120 -8.31532 -8.05986 -5.96937 -3.98754 2.44550 2.93749 3.34173 3.40139 3.43948 4.10759 4.31686 4.48175 4.49458 4.56402 4.62511 4.80004 5.00108 5.00738 5.19761 5.20436 5.30181 5.33335 5.38893 5.45376 5.46123 5.51447 5.58250 5.64686 5.70587 5.73934 5.81784 5.87471 5.91953 5.99357 6.04015 6.11828 6.24995 6.34842 6.36533 6.73775 6.79934 7.15264 7.28787 7.38587 7.41521 7.71754 7.86870 8.03599 8.03787 8.47236 9.08472 9.65034 11.14537 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035847 B = 0.002541 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.919652 B =11018.639589 C =11463.078479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.133 4.133 4 C 0.515 3.485 5 O -0.539 6.539 6 N -0.725 5.725 7 C 0.143 3.857 8 C -0.121 4.121 9 C 0.058 3.942 10 N -0.539 5.539 11 C 0.056 3.944 12 C -0.105 4.105 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.055 3.945 23 C -0.123 4.123 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.399 0.601 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.015 0.985 42 H 0.013 0.987 43 H 0.260 0.740 44 H 0.032 0.968 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.879 17.591 -14.769 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.191 4.191 4 C 0.301 3.699 5 O -0.415 6.415 6 N -0.376 5.376 7 C 0.039 3.961 8 C -0.159 4.159 9 C -0.071 4.071 10 N -0.264 5.264 11 C -0.070 4.070 12 C -0.143 4.143 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.073 4.073 23 C -0.162 4.162 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.233 0.767 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.105 0.895 46 H 0.091 0.909 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.382 17.637 -14.436 27.497 hybrid contribution 0.687 -0.344 0.245 0.807 sum -14.695 17.293 -14.191 26.765 Atomic orbital electron populations 1.21788 0.92948 1.02456 1.02950 1.21327 0.97544 0.98175 0.96734 1.21609 1.01901 0.93511 1.02031 1.20721 0.79917 0.81672 0.87606 1.90712 1.37644 1.66205 1.46970 1.46138 1.53728 1.12053 1.25694 1.21076 0.93950 0.93497 0.87613 1.21851 0.97911 0.96427 0.99708 1.21992 0.91564 0.98150 0.95409 1.62033 1.01587 1.20140 1.42631 1.22280 0.98770 0.95266 0.90732 1.21655 0.93553 0.98384 1.00666 1.19076 0.95731 0.94023 0.92791 1.21253 1.09261 1.25594 0.99463 0.92700 1.25033 0.97693 0.96868 0.94986 1.69967 1.39942 1.37358 1.06356 0.86598 0.83645 0.79031 0.78758 1.20712 1.21257 1.19872 1.22084 0.97289 0.91802 0.96170 1.21957 0.95823 0.99358 0.99078 0.92146 0.92059 0.91389 0.88533 0.91901 0.92106 0.91952 0.76715 0.89835 0.90494 0.91284 0.90294 0.95009 0.91169 0.95304 0.93462 0.92609 0.96618 0.96847 0.93067 0.95024 0.89488 0.90935 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.09 37.16 0.34 -0.38 16 2 C -0.12 -0.80 3.26 -91.77 -0.30 -1.10 16 3 C -0.13 -0.99 8.48 37.16 0.32 -0.67 16 4 C 0.51 5.32 7.13 -10.98 -0.08 5.24 16 5 O -0.54 -7.93 15.64 5.55 0.09 -7.84 16 6 N -0.73 -6.33 4.98 -53.69 -0.27 -6.60 16 7 C 0.14 1.54 2.52 -67.81 -0.17 1.37 16 8 C -0.12 -1.15 5.57 -26.65 -0.15 -1.30 16 9 C 0.06 0.69 5.46 -3.83 -0.02 0.67 16 10 N -0.54 -7.98 4.66 -234.67 -1.09 -9.08 16 11 C 0.06 0.99 4.96 -3.83 -0.02 0.97 16 12 C -0.10 -2.20 5.08 -26.74 -0.14 -2.33 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 18 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.06 0.79 5.29 -3.83 -0.02 0.77 16 23 C -0.12 -1.51 5.68 -26.65 -0.15 -1.66 16 24 H 0.06 0.24 7.56 -51.93 -0.39 -0.16 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.40 2.38 8.02 -40.82 -0.33 2.05 16 32 H 0.08 1.08 7.58 -51.93 -0.39 0.68 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.90 8.02 -51.93 -0.42 0.48 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 1.21 7.99 -51.93 -0.41 0.79 16 38 H 0.03 0.52 8.12 -51.93 -0.42 0.09 16 39 H 0.05 0.98 6.43 -51.93 -0.33 0.65 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.09 1.35 6.21 -51.93 -0.32 1.03 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -32.73 369.50 -9.83 -42.56 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -8.90 Total: -3.27 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -0.94 Total: -11.72 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.62 Total: -42.26 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.73 -9.83 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060366480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.969 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds