Wall clock time and date at job start Tue Mar 31 2020 05:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47224 * 2 1 4 4 C 1.50703 * 109.47259 * 120.00029 * 2 1 3 5 5 O 1.21285 * 119.99553 * 239.99955 * 4 2 1 6 6 N 1.34775 * 120.00041 * 60.00219 * 4 2 1 7 7 C 1.46497 * 119.99822 * 180.02562 * 6 4 2 8 8 C 1.53120 * 109.52222 * 154.99746 * 7 6 4 9 9 C 1.53039 * 109.27940 * 177.62283 * 8 7 6 10 10 N 1.46844 * 109.52178 * 300.81941 * 9 8 7 11 11 C 1.46901 * 111.00526 * 185.84060 * 10 9 8 12 12 C 1.52992 * 109.47859 * 170.00090 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 C 1.46848 * 111.20087 * 61.74385 * 10 9 8 23 23 C 1.53048 * 109.52064 * 298.25789 * 22 10 9 24 24 H 1.09002 * 109.46645 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47071 * 299.99832 * 1 2 3 26 26 H 1.08998 * 109.47157 * 60.00238 * 1 2 3 27 27 H 1.09007 * 109.47264 * 239.99866 * 2 1 3 28 28 H 1.08997 * 109.47492 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46919 * 300.00293 * 3 2 1 30 30 H 1.08997 * 109.47105 * 59.99592 * 3 2 1 31 31 H 0.97001 * 119.99636 * 359.97438 * 6 4 2 32 32 H 1.09002 * 109.52763 * 34.87282 * 7 6 4 33 33 H 1.09004 * 109.50479 * 57.67872 * 8 7 6 34 34 H 1.08998 * 109.50625 * 297.56185 * 8 7 6 35 35 H 1.09003 * 109.46575 * 180.80459 * 9 8 7 36 36 H 1.08995 * 109.45502 * 60.82603 * 9 8 7 37 37 H 1.09002 * 109.46980 * 49.99749 * 11 10 9 38 38 H 1.09001 * 109.46628 * 290.00171 * 11 10 9 39 39 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 40 40 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 42 42 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 43 43 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 44 44 H 1.08996 * 109.46339 * 58.26808 * 22 10 9 45 45 H 1.08994 * 109.46869 * 178.24483 * 22 10 9 46 46 H 1.08998 * 109.49998 * 299.23732 * 23 22 10 47 47 H 1.08994 * 109.50211 * 179.11499 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -0.1209 2.0288 6 7 1.7068 -2.0008 1.4437 7 6 2.1948 -2.6911 2.6402 8 6 1.2507 -3.8463 2.9851 9 6 1.7971 -4.5999 4.1999 10 7 3.1384 -5.1144 3.8956 11 6 3.6381 -5.9605 4.9875 12 6 4.9140 -6.6744 4.5369 13 6 5.4347 -7.5551 5.6744 14 6 6.6911 -8.2588 5.2302 15 1 7.0796 -8.0940 4.2361 16 6 7.3452 -9.1122 6.0934 17 7 6.8723 -9.3124 7.3041 18 14 8.9029 -9.9838 5.5429 19 1 10.0828 -9.1449 5.8737 20 1 9.0126 -11.2897 6.2415 21 1 8.8518 -10.2099 4.0762 22 6 4.0743 -4.0201 3.6074 23 6 3.5958 -3.2491 2.3749 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.1489 -2.4720 0.8054 32 1 2.2335 -1.9909 3.4746 33 1 1.1819 -4.5261 2.1358 34 1 0.2616 -3.4512 3.2167 35 1 1.1348 -5.4318 4.4394 36 1 1.8527 -3.9229 5.0522 37 1 2.8813 -6.6999 5.2497 38 1 3.8565 -5.3403 5.8568 39 1 5.6707 -5.9351 4.2747 40 1 4.6955 -7.2946 3.6675 41 1 4.6780 -8.2945 5.9370 42 1 5.6532 -6.9345 6.5435 43 1 7.3323 -9.9131 7.9111 44 1 4.1191 -3.3459 4.4627 45 1 5.0657 -4.4307 3.4165 46 1 3.5639 -3.9196 1.5161 47 1 4.2820 -2.4274 2.1707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060366480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:10 Heat of formation + Delta-G solvation = -90.146682 kcal Electronic energy + Delta-G solvation = -22293.442581 eV Core-core repulsion = 19087.699413 eV Total energy + Delta-G solvation = -3205.743169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24128 -39.81529 -36.84932 -35.53651 -35.39659 -33.72493 -31.93513 -31.64789 -28.35109 -27.89190 -25.84851 -24.45372 -24.18059 -23.00198 -21.58754 -21.24740 -20.47118 -18.51287 -18.11829 -17.49695 -16.71202 -16.53219 -16.27719 -16.12024 -15.59840 -15.28527 -15.00789 -14.70900 -14.61715 -14.33247 -14.14186 -13.66580 -13.62746 -13.34112 -13.14886 -13.04446 -12.86596 -12.73147 -12.53313 -12.38820 -12.24831 -12.20983 -12.05959 -11.95783 -11.92591 -11.56310 -11.38736 -11.32597 -11.07322 -10.69806 -10.55273 -10.05393 -9.30176 -8.20473 -6.31324 1.39395 1.40898 1.52224 1.65764 2.18893 2.40518 2.91687 3.12508 3.63583 3.77053 3.80315 4.01103 4.06460 4.08259 4.12296 4.25238 4.32085 4.42648 4.46805 4.52221 4.63082 4.65869 4.72747 4.77605 4.87877 4.90742 4.92759 4.94648 4.96220 5.01400 5.09474 5.09722 5.12960 5.24131 5.29550 5.32891 5.34387 5.51894 5.53027 5.74384 5.85826 6.06312 6.18508 6.27769 6.59492 6.85415 7.29741 7.37696 8.91446 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035847 B = 0.002541 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.919652 B =11018.639589 C =11463.078479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C -0.134 4.134 4 C 0.509 3.491 5 O -0.590 6.590 6 N -0.711 5.711 7 C 0.148 3.852 8 C -0.108 4.108 9 C 0.052 3.948 10 N -0.538 5.538 11 C 0.067 3.933 12 C -0.089 4.089 13 C 0.025 3.975 14 C -0.542 4.542 15 H 0.058 0.942 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.263 1.263 22 C 0.055 3.945 23 C -0.113 4.113 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.416 0.584 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.020 0.980 39 H 0.046 0.954 40 H 0.054 0.946 41 H -0.006 1.006 42 H -0.013 1.013 43 H 0.264 0.736 44 H 0.022 0.978 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.103 17.460 -17.186 29.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C -0.191 4.191 4 C 0.297 3.703 5 O -0.470 6.470 6 N -0.362 5.362 7 C 0.042 3.958 8 C -0.146 4.146 9 C -0.076 4.076 10 N -0.263 5.263 11 C -0.061 4.061 12 C -0.127 4.127 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.076 0.924 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.199 1.199 20 H -0.206 1.206 21 H -0.187 1.187 22 C -0.073 4.073 23 C -0.152 4.152 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.046 0.954 37 H 0.093 0.907 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.013 0.987 42 H 0.006 0.994 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.646 17.500 -16.891 29.473 hybrid contribution 1.054 -0.275 1.026 1.497 sum -15.592 17.224 -15.866 28.133 Atomic orbital electron populations 1.21796 0.91049 1.03637 1.03275 1.21380 0.98948 0.97297 0.95512 1.21624 1.00777 0.94306 1.02427 1.21448 0.78971 0.81852 0.88065 1.90695 1.40037 1.67360 1.48951 1.45976 1.53305 1.11661 1.25274 1.20876 0.93551 0.93554 0.87782 1.21776 0.98306 0.95609 0.98896 1.22148 0.89952 0.98789 0.96687 1.62003 1.02847 1.20270 1.41185 1.22016 0.97282 0.95557 0.91203 1.21393 0.95187 0.97646 0.98465 1.18976 0.94802 0.93790 0.93658 1.21685 1.10344 1.26162 0.99807 0.92352 1.26000 1.01384 0.97644 0.94963 1.70097 1.41625 1.38073 1.07578 0.85440 0.79010 0.77777 0.78786 1.19872 1.20571 1.18710 1.22054 0.96749 0.91631 0.96889 1.21840 0.96614 0.98672 0.98093 0.90557 0.93289 0.89537 0.86216 0.93716 0.89568 0.93642 0.74604 0.92183 0.89169 0.88809 0.89125 0.95416 0.90673 0.96170 0.93577 0.92678 0.98718 0.99414 0.92768 0.95990 0.91112 0.90164 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.09 71.98 0.65 -0.32 16 2 C -0.11 -1.28 3.26 -11.54 -0.04 -1.32 16 3 C -0.13 -1.86 8.48 71.98 0.61 -1.25 16 4 C 0.51 10.01 7.13 87.66 0.62 10.63 16 5 O -0.59 -17.76 15.64 -3.04 -0.05 -17.81 16 6 N -0.71 -10.95 4.98 -442.15 -2.20 -13.15 16 7 C 0.15 2.99 2.52 45.07 0.11 3.10 16 8 C -0.11 -1.76 5.57 30.65 0.17 -1.59 16 9 C 0.05 1.17 5.46 86.33 0.47 1.64 16 10 N -0.54 -15.55 4.66 -896.37 -4.17 -19.72 16 11 C 0.07 2.36 4.96 86.30 0.43 2.79 16 12 C -0.09 -3.80 5.08 30.59 0.16 -3.65 16 13 C 0.03 1.37 4.97 29.85 0.15 1.52 16 14 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 15 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 16 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 17 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 18 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.06 1.60 5.29 86.33 0.46 2.06 16 23 C -0.11 -2.72 5.68 30.65 0.17 -2.54 16 24 H 0.08 0.30 7.56 -2.39 -0.02 0.28 16 25 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 29 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.42 3.52 8.02 -92.71 -0.74 2.78 16 32 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 33 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.85 8.02 -2.39 -0.02 1.83 16 36 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 2.57 7.99 -2.39 -0.02 2.55 16 38 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 39 H 0.05 1.96 6.43 -2.39 -0.02 1.94 16 40 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 41 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 43 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 2.25 6.21 -2.39 -0.01 2.24 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -72.87 369.50 0.72 -72.14 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.17 Total: 8.97 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 4.67 Total: -20.06 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -6.09 Total: -90.38 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.05 Total: -17.81 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -72.87 0.72 -72.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060366480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.003 kcal (2) G-P(sol) polarization free energy of solvation -72.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds