Wall clock time and date at job start Tue Mar 31 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47378 * 2 1 4 4 H 1.08999 * 109.47109 * 54.99932 * 3 2 1 5 5 C 1.53007 * 109.46764 * 294.99980 * 3 2 1 6 6 C 1.53001 * 109.47054 * 174.99935 * 3 2 1 7 7 H 1.08994 * 109.46950 * 57.56540 * 6 3 2 8 8 C 1.52997 * 109.47355 * 297.56053 * 6 3 2 9 9 N 1.46901 * 109.46637 * 177.55809 * 6 3 2 10 10 C 1.46907 * 110.99820 * 70.26796 * 9 6 3 11 11 C 1.50700 * 109.46856 * 199.04331 * 10 9 6 12 12 O 1.21284 * 120.00234 * 358.38272 * 11 10 9 13 13 N 1.34779 * 119.99980 * 178.11333 * 11 10 9 14 14 C 1.46495 * 120.00216 * 180.27918 * 13 11 10 15 15 C 1.50698 * 109.47376 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99683 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00365 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99793 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00312 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47062 * 59.99783 * 19 17 15 21 21 H 1.48497 * 109.47286 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46620 * 299.99968 * 19 17 15 23 23 C 1.46904 * 110.99611 * 194.21265 * 9 6 3 24 24 C 1.53004 * 117.49326 * 125.89711 * 23 9 6 25 25 C 1.53003 * 60.00078 * 252.51206 * 24 23 9 26 26 H 1.09007 * 109.47037 * 300.00057 * 1 2 3 27 27 H 1.08989 * 109.47089 * 60.00150 * 1 2 3 28 28 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46887 * 239.99571 * 2 1 3 30 30 H 1.09002 * 109.47036 * 119.99692 * 2 1 3 31 31 H 1.08997 * 109.46719 * 185.61514 * 5 3 2 32 32 H 1.08996 * 109.46742 * 305.61546 * 5 3 2 33 33 H 1.08999 * 109.46675 * 65.62089 * 5 3 2 34 34 H 1.08997 * 109.46863 * 60.00223 * 8 6 3 35 35 H 1.08999 * 109.47298 * 179.97438 * 8 6 3 36 36 H 1.09002 * 109.46881 * 300.00230 * 8 6 3 37 37 H 1.09000 * 109.47571 * 79.04151 * 10 9 6 38 38 H 1.09002 * 109.46832 * 319.04060 * 10 9 6 39 39 H 0.97004 * 119.99375 * 0.26705 * 13 11 10 40 40 H 1.09002 * 109.46930 * 299.99364 * 14 13 11 41 41 H 1.08996 * 109.47744 * 59.99229 * 14 13 11 42 42 H 0.97002 * 119.99563 * 179.97438 * 18 17 15 43 43 H 1.08992 * 115.55516 * 271.59757 * 23 9 6 44 44 H 1.09000 * 117.50469 * 359.97438 * 24 23 9 45 45 H 1.09006 * 117.49863 * 145.02331 * 24 23 9 46 46 H 1.08996 * 117.49551 * 252.51767 * 25 24 23 47 47 H 1.08993 * 117.50333 * 107.49069 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4442 0.1257 7 1 3.9975 0.8685 -0.6924 8 6 3.9673 0.8148 1.4609 9 7 4.0594 2.8263 0.0670 10 6 3.6963 3.5674 1.2823 11 6 3.7873 5.0475 1.0140 12 8 4.1500 5.4457 -0.0727 13 7 3.4605 5.9288 1.9799 14 6 3.5431 7.3677 1.7172 15 6 3.1267 8.1281 2.9498 16 1 2.8299 7.5931 3.8398 17 6 3.1248 9.5069 2.9415 18 7 3.4869 10.1584 1.8579 19 14 2.6094 10.4495 4.4696 20 1 3.5120 10.0988 5.5954 21 1 2.6930 11.9080 4.2033 22 1 1.2128 10.0909 4.8247 23 6 5.5114 2.8568 -0.1541 24 6 6.0288 3.6802 -1.3354 25 6 6.0512 2.1517 -1.4001 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0824 3.1196 -1.3514 32 1 1.9854 1.5326 -2.1517 33 1 0.5497 2.2145 -1.3504 34 1 3.6004 -0.2106 1.5044 35 1 5.0536 0.8157 1.5503 36 1 3.5346 1.3906 2.2791 37 1 4.3804 3.3015 2.0882 38 1 2.6769 3.3127 1.5722 39 1 3.1704 5.6103 2.8491 40 1 4.5681 7.6311 1.4564 41 1 2.8804 7.6249 0.8909 42 1 3.4851 11.1284 1.8519 43 1 6.1248 2.8275 0.7463 44 1 5.2919 4.1988 -1.9487 45 1 6.9829 4.1928 -1.2121 46 1 7.0199 1.6588 -1.3193 47 1 5.3291 1.6651 -2.0556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060562590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:22 Heat of formation + Delta-G solvation = -22.137064 kcal Electronic energy + Delta-G solvation = -23306.369793 eV Core-core repulsion = 20103.575743 eV Total energy + Delta-G solvation = -3202.794050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.78006 -38.00773 -36.47607 -34.05708 -33.77997 -32.23356 -30.30538 -29.27441 -27.77065 -25.89446 -24.50307 -22.87097 -22.44563 -21.92513 -20.26316 -19.87141 -18.83868 -17.28442 -16.15874 -15.79548 -15.57050 -14.95587 -14.87803 -14.67589 -14.26487 -14.13602 -13.73558 -13.54137 -13.21329 -12.82143 -12.53269 -12.47829 -12.14239 -12.00731 -11.87956 -11.77055 -11.62084 -11.41406 -11.33140 -11.14853 -10.96065 -10.83942 -10.61260 -10.51382 -10.36643 -10.27709 -10.09947 -9.89741 -9.36423 -8.89221 -8.68027 -8.02985 -7.75228 -6.13156 -4.19775 3.26802 3.31562 3.32998 3.53369 3.65945 4.03236 4.28016 4.47009 4.64161 4.84043 4.90896 5.06062 5.13406 5.18243 5.22264 5.22691 5.31858 5.39717 5.42552 5.51495 5.54837 5.61440 5.66477 5.70425 5.71757 5.77668 5.85465 5.85647 5.94026 5.97982 5.99384 6.15433 6.18715 6.29400 6.38528 6.61390 6.62612 7.10409 7.28835 7.39724 7.55511 7.58999 7.74173 8.02464 8.73264 8.86151 9.25845 9.47750 10.96995 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.003897 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.085647 B = 7182.386169 C = 8013.257340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.083 4.083 4 H 0.068 0.932 5 C -0.141 4.141 6 C 0.086 3.914 7 H 0.084 0.916 8 C -0.187 4.187 9 N -0.480 5.480 10 C 0.037 3.963 11 C 0.498 3.502 12 O -0.530 6.530 13 N -0.720 5.720 14 C 0.254 3.746 15 C -0.543 4.543 16 H 0.061 0.939 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.014 3.986 24 C -0.135 4.135 25 C -0.186 4.186 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.387 0.613 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 -21.383 -2.392 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.102 4.102 4 H 0.087 0.913 5 C -0.198 4.198 6 C -0.022 4.022 7 H 0.102 0.898 8 C -0.246 4.246 9 N -0.203 5.203 10 C -0.095 4.095 11 C 0.281 3.719 12 O -0.407 6.407 13 N -0.370 5.370 14 C 0.133 3.867 15 C -0.581 4.581 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.095 4.095 24 C -0.173 4.173 25 C -0.223 4.223 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.219 0.781 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.126 0.874 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.613 -20.626 -3.677 20.961 hybrid contribution -0.026 0.074 2.092 2.093 sum -0.639 -20.552 -1.586 20.623 Atomic orbital electron populations 1.21800 0.95912 1.01178 1.02109 1.21633 0.95906 0.96467 1.01753 1.21208 0.93923 0.95681 0.99419 0.91331 1.21762 1.00147 1.02184 0.95749 1.21799 0.95081 0.88364 0.96942 0.89776 1.22568 1.01493 1.01593 0.98927 1.61559 1.11094 1.11810 1.35828 1.22061 1.02136 0.93344 0.91927 1.20316 0.78783 0.87540 0.85228 1.90634 1.46335 1.80067 1.23666 1.46438 1.66904 1.09077 1.14551 1.19013 0.97413 0.73444 0.96806 1.21211 1.46934 0.91614 0.98348 0.92074 1.24945 0.94981 0.97515 0.96547 1.69971 1.46570 1.08277 1.27513 0.86498 0.79121 0.78719 0.82697 1.20120 1.21085 1.20093 1.22262 0.87810 1.06897 0.92520 1.22921 1.01891 0.91717 1.00744 1.23079 1.01602 0.96986 1.00656 0.92817 0.92393 0.93158 0.92169 0.91991 0.90551 0.93517 0.93488 0.91961 0.92702 0.92276 0.92373 0.88596 0.78134 0.95797 0.95712 0.92454 0.90134 0.87360 0.89591 0.89423 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.67 37.16 0.36 -0.89 16 2 C -0.12 -1.01 5.23 -26.73 -0.14 -1.15 16 3 C -0.08 -0.86 1.82 -90.62 -0.17 -1.03 16 4 H 0.07 0.76 6.53 -51.93 -0.34 0.42 16 5 C -0.14 -1.65 8.71 37.16 0.32 -1.33 16 6 C 0.09 0.93 1.80 -67.71 -0.12 0.80 16 7 H 0.08 0.90 6.55 -51.93 -0.34 0.56 16 8 C -0.19 -1.75 8.19 37.16 0.30 -1.45 16 9 N -0.48 -6.56 3.18 -220.14 -0.70 -7.26 16 10 C 0.04 0.53 4.00 -4.97 -0.02 0.51 16 11 C 0.50 9.88 7.69 -10.98 -0.08 9.80 16 12 O -0.53 -12.44 14.26 5.55 0.08 -12.36 16 13 N -0.72 -15.23 5.55 -61.48 -0.34 -15.57 16 14 C 0.25 6.79 5.43 -5.20 -0.03 6.76 16 15 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 16 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 19 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 23 C 0.01 0.19 3.96 -67.71 -0.27 -0.08 16 24 C -0.13 -1.99 9.19 -26.73 -0.25 -2.24 16 25 C -0.19 -2.17 9.60 -26.73 -0.26 -2.42 16 26 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 27 H 0.06 0.49 6.69 -51.94 -0.35 0.14 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.49 6.25 -51.93 -0.32 0.16 16 31 H 0.08 1.13 7.36 -51.93 -0.38 0.75 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.52 6.85 -51.93 -0.36 0.16 16 34 H 0.06 0.50 6.38 -51.93 -0.33 0.17 16 35 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 36 H 0.06 0.56 6.63 -51.93 -0.34 0.22 16 37 H 0.06 0.76 7.16 -51.93 -0.37 0.39 16 38 H 0.10 1.24 6.03 -51.93 -0.31 0.93 16 39 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16 40 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 44 H 0.11 1.87 7.71 -51.93 -0.40 1.47 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 1.06 7.37 -51.93 -0.38 0.68 16 LS Contribution 363.60 15.07 5.48 5.48 Total: -1.00 -30.81 363.60 -8.82 -39.64 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -8.30 Total: 5.89 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.76 Total: -6.20 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.31 Total: -48.41 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.81 -8.82 -39.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060562590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.499 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds