Wall clock time and date at job start Tue Mar 31 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47378 * 2 1 4 4 H 1.08999 * 109.47109 * 54.99932 * 3 2 1 5 5 C 1.53007 * 109.46764 * 294.99980 * 3 2 1 6 6 C 1.53001 * 109.47054 * 174.99935 * 3 2 1 7 7 H 1.08994 * 109.46950 * 57.56540 * 6 3 2 8 8 C 1.52997 * 109.47355 * 297.56053 * 6 3 2 9 9 N 1.46901 * 109.46637 * 177.55809 * 6 3 2 10 10 C 1.46907 * 110.99820 * 70.26796 * 9 6 3 11 11 C 1.50700 * 109.46856 * 199.04331 * 10 9 6 12 12 O 1.21284 * 120.00234 * 358.38272 * 11 10 9 13 13 N 1.34779 * 119.99980 * 178.11333 * 11 10 9 14 14 C 1.46495 * 120.00216 * 180.27918 * 13 11 10 15 15 C 1.50698 * 109.47376 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99683 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00365 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99793 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00312 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47062 * 59.99783 * 19 17 15 21 21 H 1.48497 * 109.47286 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46620 * 299.99968 * 19 17 15 23 23 C 1.46904 * 110.99611 * 194.21265 * 9 6 3 24 24 C 1.53004 * 117.49326 * 125.89711 * 23 9 6 25 25 C 1.53003 * 60.00078 * 252.51206 * 24 23 9 26 26 H 1.09007 * 109.47037 * 300.00057 * 1 2 3 27 27 H 1.08989 * 109.47089 * 60.00150 * 1 2 3 28 28 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46887 * 239.99571 * 2 1 3 30 30 H 1.09002 * 109.47036 * 119.99692 * 2 1 3 31 31 H 1.08997 * 109.46719 * 185.61514 * 5 3 2 32 32 H 1.08996 * 109.46742 * 305.61546 * 5 3 2 33 33 H 1.08999 * 109.46675 * 65.62089 * 5 3 2 34 34 H 1.08997 * 109.46863 * 60.00223 * 8 6 3 35 35 H 1.08999 * 109.47298 * 179.97438 * 8 6 3 36 36 H 1.09002 * 109.46881 * 300.00230 * 8 6 3 37 37 H 1.09000 * 109.47571 * 79.04151 * 10 9 6 38 38 H 1.09002 * 109.46832 * 319.04060 * 10 9 6 39 39 H 0.97004 * 119.99375 * 0.26705 * 13 11 10 40 40 H 1.09002 * 109.46930 * 299.99364 * 14 13 11 41 41 H 1.08996 * 109.47744 * 59.99229 * 14 13 11 42 42 H 0.97002 * 119.99563 * 179.97438 * 18 17 15 43 43 H 1.08992 * 115.55516 * 271.59757 * 23 9 6 44 44 H 1.09000 * 117.50469 * 359.97438 * 24 23 9 45 45 H 1.09006 * 117.49863 * 145.02331 * 24 23 9 46 46 H 1.08996 * 117.49551 * 252.51767 * 25 24 23 47 47 H 1.08993 * 117.50333 * 107.49069 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4442 0.1257 7 1 3.9975 0.8685 -0.6924 8 6 3.9673 0.8148 1.4609 9 7 4.0594 2.8263 0.0670 10 6 3.6963 3.5674 1.2823 11 6 3.7873 5.0475 1.0140 12 8 4.1500 5.4457 -0.0727 13 7 3.4605 5.9288 1.9799 14 6 3.5431 7.3677 1.7172 15 6 3.1267 8.1281 2.9498 16 1 2.8299 7.5931 3.8398 17 6 3.1248 9.5069 2.9415 18 7 3.4869 10.1584 1.8579 19 14 2.6094 10.4495 4.4696 20 1 3.5120 10.0988 5.5954 21 1 2.6930 11.9080 4.2033 22 1 1.2128 10.0909 4.8247 23 6 5.5114 2.8568 -0.1541 24 6 6.0288 3.6802 -1.3354 25 6 6.0512 2.1517 -1.4001 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0824 3.1196 -1.3514 32 1 1.9854 1.5326 -2.1517 33 1 0.5497 2.2145 -1.3504 34 1 3.6004 -0.2106 1.5044 35 1 5.0536 0.8157 1.5503 36 1 3.5346 1.3906 2.2791 37 1 4.3804 3.3015 2.0882 38 1 2.6769 3.3127 1.5722 39 1 3.1704 5.6103 2.8491 40 1 4.5681 7.6311 1.4564 41 1 2.8804 7.6249 0.8909 42 1 3.4851 11.1284 1.8519 43 1 6.1248 2.8275 0.7463 44 1 5.2919 4.1988 -1.9487 45 1 6.9829 4.1928 -1.2121 46 1 7.0199 1.6588 -1.3193 47 1 5.3291 1.6651 -2.0556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060562590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:21 Heat of formation + Delta-G solvation = -41.822452 kcal Electronic energy + Delta-G solvation = -23307.223416 eV Core-core repulsion = 20103.575743 eV Total energy + Delta-G solvation = -3203.647673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98596 -39.48083 -37.42461 -36.00935 -34.80062 -34.25031 -31.31715 -30.10022 -29.53012 -27.37963 -25.30447 -24.52192 -23.64395 -23.02546 -21.55414 -21.08925 -20.01316 -18.90086 -17.76919 -17.21966 -16.87703 -16.62245 -15.87872 -15.80349 -15.68883 -15.51354 -14.85132 -14.65150 -14.25520 -14.12986 -13.91837 -13.81946 -13.64172 -13.30796 -12.93928 -12.88672 -12.77998 -12.65705 -12.60193 -12.41238 -12.29420 -12.22560 -12.04725 -11.49550 -11.47284 -11.27431 -11.22565 -11.17083 -10.92351 -10.77184 -10.52999 -9.71757 -9.08368 -8.27891 -6.44602 1.42609 1.46921 1.55064 1.93463 2.29888 2.48077 2.96356 3.03761 3.06659 3.78597 3.98185 4.05103 4.09721 4.17229 4.17895 4.29802 4.36875 4.38825 4.47810 4.54143 4.60284 4.71226 4.74829 4.81012 4.83701 4.90105 5.04341 5.06472 5.14826 5.16350 5.19617 5.20528 5.28069 5.28400 5.36038 5.41968 5.43315 5.52572 5.59178 5.66049 5.76032 5.88414 6.12621 6.28674 6.67252 7.04953 7.25497 7.64745 8.84080 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.003897 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.085647 B = 7182.386169 C = 8013.257340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.081 4.081 4 H 0.063 0.937 5 C -0.136 4.136 6 C 0.090 3.910 7 H 0.089 0.911 8 C -0.183 4.183 9 N -0.498 5.498 10 C 0.053 3.947 11 C 0.492 3.508 12 O -0.571 6.571 13 N -0.715 5.715 14 C 0.273 3.727 15 C -0.556 4.556 16 H 0.083 0.917 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.984 3.016 20 H -0.262 1.262 21 H -0.286 1.286 22 H -0.262 1.262 23 C 0.008 3.992 24 C -0.165 4.165 25 C -0.148 4.148 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.404 0.596 40 H -0.017 1.017 41 H -0.017 1.017 42 H 0.268 0.732 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.113 0.887 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 -24.081 -0.126 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.099 4.099 4 H 0.081 0.919 5 C -0.194 4.194 6 C -0.017 4.017 7 H 0.107 0.893 8 C -0.241 4.241 9 N -0.222 5.222 10 C -0.078 4.078 11 C 0.278 3.722 12 O -0.450 6.450 13 N -0.367 5.367 14 C 0.150 3.850 15 C -0.594 4.594 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.807 3.193 20 H -0.186 1.186 21 H -0.211 1.211 22 H -0.186 1.186 23 C -0.101 4.101 24 C -0.203 4.203 25 C -0.186 4.186 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.135 0.865 39 H 0.239 0.761 40 H 0.001 0.999 41 H 0.000 1.000 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.132 0.868 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.173 -23.386 -1.390 23.457 hybrid contribution 0.148 0.897 1.265 1.557 sum -1.025 -22.489 -0.125 22.513 Atomic orbital electron populations 1.21805 0.95795 1.01842 1.01646 1.21584 0.95942 0.94858 1.02683 1.21202 0.93757 0.96923 0.98062 0.91907 1.21689 1.00095 1.00395 0.97191 1.21847 0.95069 0.86522 0.98307 0.89266 1.22520 1.01556 1.02494 0.97532 1.61439 1.11265 1.13809 1.35642 1.21916 1.04022 0.88818 0.93027 1.21400 0.76942 0.89808 0.84059 1.90629 1.47732 1.81256 1.25399 1.46191 1.67505 1.07040 1.15971 1.18413 0.93875 0.76960 0.95769 1.21610 1.46742 0.92227 0.98838 0.89925 1.26070 0.94595 0.98753 1.00175 1.70145 1.47846 1.08710 1.30335 0.85221 0.79346 0.76648 0.78084 1.18627 1.21104 1.18646 1.22341 0.88036 1.06806 0.92901 1.22773 1.01087 0.94049 1.02412 1.23105 1.02615 0.94194 0.98659 0.93073 0.93121 0.91945 0.91594 0.90637 0.94215 0.92880 0.93166 0.90109 0.92696 0.92198 0.90006 0.86496 0.76063 0.99897 0.99950 0.92315 0.89648 0.90893 0.90049 0.86845 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.67 71.98 0.70 -1.45 16 2 C -0.11 -1.57 5.23 30.59 0.16 -1.41 16 3 C -0.08 -1.51 1.82 -10.79 -0.02 -1.53 16 4 H 0.06 1.26 6.53 -2.39 -0.02 1.24 16 5 C -0.14 -3.13 8.71 71.98 0.63 -2.51 16 6 C 0.09 1.71 1.80 44.91 0.08 1.79 16 7 H 0.09 1.64 6.55 -2.39 -0.02 1.63 16 8 C -0.18 -2.75 8.19 71.98 0.59 -2.16 16 9 N -0.50 -13.19 3.18 -850.38 -2.71 -15.89 16 10 C 0.05 1.48 4.00 85.56 0.34 1.82 16 11 C 0.49 20.02 7.69 87.66 0.67 20.69 16 12 O -0.57 -28.43 14.26 -3.04 -0.04 -28.47 16 13 N -0.72 -30.90 5.55 -466.80 -2.59 -33.49 16 14 C 0.27 15.33 5.43 85.63 0.46 15.80 16 15 C -0.56 -30.78 9.28 25.60 0.24 -30.54 16 16 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 17 C 0.00 0.20 5.46 84.65 0.46 0.66 16 18 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 19 Si 0.98 42.77 29.54 68.60 2.03 44.80 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 23 C 0.01 0.21 3.96 44.92 0.18 0.38 16 24 C -0.17 -5.08 9.19 30.60 0.28 -4.80 16 25 C -0.15 -3.23 9.60 30.60 0.29 -2.94 16 26 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.05 0.77 6.69 -2.39 -0.02 0.76 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.88 6.25 -2.39 -0.01 0.86 16 31 H 0.04 1.20 7.36 -2.39 -0.02 1.19 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.09 6.85 -2.39 -0.02 1.07 16 34 H 0.08 0.94 6.38 -2.39 -0.02 0.93 16 35 H 0.05 0.85 7.67 -2.39 -0.02 0.84 16 36 H 0.06 0.91 6.63 -2.39 -0.02 0.89 16 37 H 0.08 1.94 7.16 -2.39 -0.02 1.92 16 38 H 0.12 2.79 6.03 -2.39 -0.01 2.77 16 39 H 0.40 14.44 8.32 -92.71 -0.77 13.67 16 40 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 41 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 42 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 43 H 0.09 2.19 7.91 -2.39 -0.02 2.18 16 44 H 0.07 2.75 7.71 -2.39 -0.02 2.73 16 45 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 46 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.10 2.07 7.37 -2.39 -0.02 2.05 16 Total: -1.00 -71.07 363.60 2.21 -68.86 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.17 Total: 27.26 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.07 Total: -6.19 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -5.01 Total: -106.26 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.04 Total: -28.47 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.07 2.21 -68.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060562590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.041 kcal (2) G-P(sol) polarization free energy of solvation -71.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds