Wall clock time and date at job start Tue Mar 31 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47277 * 2 1 4 4 N 1.46504 * 109.47394 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00139 * 264.02068 * 4 3 2 6 6 H 1.07997 * 120.00091 * 187.76897 * 5 4 3 7 7 C 1.38819 * 120.00071 * 7.76220 * 5 4 3 8 8 N 1.31615 * 119.99609 * 25.67185 * 7 5 4 9 9 Si 1.86797 * 119.99742 * 205.67104 * 7 5 4 10 10 H 1.48501 * 109.47372 * 84.99129 * 9 7 5 11 11 H 1.48500 * 109.46927 * 204.98873 * 9 7 5 12 12 H 1.48502 * 109.47336 * 324.98398 * 9 7 5 13 13 C 1.46495 * 119.99399 * 84.01538 * 4 3 2 14 14 C 1.50707 * 109.47421 * 270.00055 * 13 4 3 15 15 O 1.21288 * 119.99723 * 0.02562 * 14 13 4 16 16 N 1.34775 * 120.00347 * 180.02562 * 14 13 4 17 17 C 1.46492 * 120.00085 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.47530 * 34.99696 * 17 16 14 19 19 C 1.52998 * 109.47413 * 274.99637 * 17 16 14 20 20 C 1.52998 * 109.46794 * 299.99997 * 19 17 16 21 21 C 1.52995 * 109.47377 * 299.99795 * 20 19 17 22 22 C 1.52996 * 109.47273 * 60.00079 * 21 20 19 23 23 C 1.53002 * 109.47194 * 300.00157 * 22 21 20 24 24 H 1.09002 * 109.46905 * 300.00187 * 23 22 21 25 25 C 1.52996 * 109.47563 * 179.97438 * 23 22 21 26 26 H 1.08996 * 109.47109 * 59.99812 * 1 2 3 27 27 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46781 * 299.99532 * 1 2 3 29 29 H 1.08998 * 109.47032 * 239.99803 * 2 1 3 30 30 H 1.08996 * 109.47109 * 120.00188 * 2 1 3 31 31 H 1.09002 * 109.46775 * 59.99953 * 3 2 1 32 32 H 1.08996 * 109.47204 * 300.00130 * 3 2 1 33 33 H 0.97007 * 119.99375 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46729 * 150.00450 * 13 4 3 35 35 H 1.08993 * 109.47926 * 30.00462 * 13 4 3 36 36 H 0.97004 * 119.99413 * 359.97438 * 16 14 13 37 37 H 1.09001 * 109.46963 * 59.99807 * 19 17 16 38 38 H 1.09001 * 109.47170 * 180.02562 * 19 17 16 39 39 H 1.09001 * 109.47235 * 60.00072 * 20 19 17 40 40 H 1.09005 * 109.47018 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.47330 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.46874 * 299.99862 * 21 20 19 43 43 H 1.09002 * 109.47347 * 60.00073 * 22 21 20 44 44 H 1.09001 * 109.47246 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.46697 * 300.00024 * 25 23 22 46 46 H 1.08994 * 109.47245 * 59.99638 * 25 23 22 47 47 H 1.09000 * 109.47384 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1893 1.5662 1.1803 6 1 5.2618 1.6924 1.1718 7 6 3.5042 1.5295 2.3871 8 7 2.3519 0.8992 2.4708 9 14 4.2181 2.3748 3.8922 10 1 3.8361 3.8098 3.8819 11 1 3.6874 1.7301 5.1202 12 1 5.6982 2.2563 3.8712 13 6 4.2379 1.3100 -1.2609 14 6 4.4892 -0.1485 -1.5452 15 8 4.0945 -0.9941 -0.7705 16 7 5.1526 -0.5132 -2.6603 17 6 5.3963 -1.9310 -2.9369 18 1 4.5491 -2.5205 -2.5866 19 6 6.6658 -2.3813 -2.2112 20 6 7.8550 -1.5539 -2.7030 21 6 8.0295 -1.7570 -4.2094 22 6 6.7601 -1.3067 -4.9351 23 6 5.5708 -2.1341 -4.4433 24 1 5.7522 -3.1890 -4.6491 25 6 4.3012 -1.6835 -5.1686 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.8734 0.8733 3.3142 34 1 5.1904 1.8346 -1.1845 35 1 3.6493 1.7417 -2.0703 36 1 5.4679 0.1631 -3.2800 37 1 6.5415 -2.2366 -1.1380 38 1 6.8473 -3.4361 -2.4174 39 1 7.6737 -0.4990 -2.4972 40 1 8.7594 -1.8745 -2.1857 41 1 8.8771 -1.1679 -4.5597 42 1 8.2109 -2.8119 -4.4151 43 1 6.5787 -0.2518 -4.7293 44 1 6.8843 -1.4518 -6.0083 45 1 4.1201 -0.6286 -4.9623 46 1 4.4252 -1.8277 -6.2418 47 1 3.4538 -2.2726 -4.8179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060565452.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:38 Heat of formation + Delta-G solvation = -32.762679 kcal Electronic energy + Delta-G solvation = -24086.842212 eV Core-core repulsion = 20883.587401 eV Total energy + Delta-G solvation = -3203.254811 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.87127 -37.76610 -35.55941 -33.16221 -32.41302 -31.80017 -31.25748 -29.78801 -26.90169 -25.88925 -25.38453 -22.70204 -21.89283 -21.36589 -20.27322 -19.57502 -18.70798 -16.72299 -16.51832 -15.52492 -15.09519 -14.78862 -14.74037 -14.09876 -13.88759 -13.60576 -13.47393 -13.09704 -12.88695 -12.75237 -12.66194 -12.11706 -11.98857 -11.86456 -11.66272 -11.53242 -11.36155 -11.13812 -10.90627 -10.80201 -10.56406 -10.53269 -10.37178 -10.25498 -10.02427 -9.93578 -9.85864 -9.61739 -9.04487 -8.81697 -8.32570 -8.17229 -6.79564 -5.65417 -2.96515 3.45134 3.52095 3.53357 3.68652 3.87604 4.58471 4.64230 4.69864 4.76706 5.09040 5.21418 5.39166 5.41203 5.46484 5.49580 5.57520 5.60177 5.63149 5.76240 5.81003 5.90800 5.96913 6.02432 6.08170 6.18662 6.22095 6.28004 6.30131 6.35388 6.37909 6.40479 6.46177 6.48689 6.70466 6.79052 7.08784 7.17880 7.36918 7.48110 7.75871 7.95555 8.24312 8.38504 8.45186 9.24814 9.33238 9.93295 10.37133 11.37354 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.005083 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.673272 B = 5507.616012 C = 6387.621921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.172 3.828 4 N -0.569 5.569 5 C -0.247 4.247 6 H 0.072 0.928 7 C 0.001 3.999 8 N -0.885 5.885 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.283 1.283 13 C 0.131 3.869 14 C 0.469 3.531 15 O -0.507 6.507 16 N -0.740 5.740 17 C 0.152 3.848 18 H 0.080 0.920 19 C -0.130 4.130 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.097 4.097 24 H 0.076 0.924 25 C -0.145 4.145 26 H 0.027 0.973 27 H 0.030 0.970 28 H 0.048 0.952 29 H 0.025 0.975 30 H 0.099 0.901 31 H 0.090 0.910 32 H -0.001 1.001 33 H 0.250 0.750 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.388 0.612 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 -3.390 -15.724 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.047 3.953 4 N -0.287 5.287 5 C -0.376 4.376 6 H 0.090 0.910 7 C -0.197 4.197 8 N -0.530 5.530 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.209 1.209 13 C -0.002 4.002 14 C 0.253 3.747 15 O -0.379 6.379 16 N -0.397 5.397 17 C 0.047 3.953 18 H 0.098 0.902 19 C -0.169 4.169 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.151 4.151 23 C -0.116 4.116 24 H 0.094 0.906 25 C -0.202 4.202 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.018 0.982 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.222 0.778 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.230 -3.995 -14.920 16.654 hybrid contribution 0.563 0.353 0.478 0.818 sum 6.792 -3.642 -14.442 16.370 Atomic orbital electron populations 1.21686 0.99396 0.98989 0.99608 1.22054 0.91593 1.00001 1.02272 1.20984 0.81339 0.94920 0.98053 1.44226 1.01911 1.81534 1.00997 1.19198 0.92030 1.42820 0.83577 0.91004 1.24712 0.97679 1.00155 0.97116 1.70224 1.16950 1.41180 1.24647 0.86374 0.78333 0.79824 0.82757 1.21639 1.22029 1.20881 1.20913 0.97751 0.90476 0.91023 1.23467 0.76519 0.94961 0.79801 1.90682 1.48579 1.52853 1.45738 1.46597 1.60623 1.06699 1.25762 1.20742 0.97268 0.84366 0.92966 0.90200 1.21900 0.94831 0.98931 1.01197 1.21470 0.97895 1.00980 0.95053 1.21537 0.97234 1.01056 0.95741 1.21582 0.94427 0.99780 0.99322 1.21398 0.95248 1.00283 0.94714 0.90572 1.21793 0.97122 1.01997 0.99332 0.95428 0.95089 0.93243 0.95675 0.88259 0.89211 0.98246 0.93945 0.91100 0.91781 0.77839 0.91188 0.92062 0.91690 0.92528 0.92321 0.92277 0.91950 0.92110 0.92307 0.93021 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.91 37.16 0.37 -2.54 16 2 C -0.12 -2.95 4.74 -26.73 -0.13 -3.08 16 3 C 0.17 4.25 4.92 -4.04 -0.02 4.23 16 4 N -0.57 -14.20 2.12 -174.61 -0.37 -14.57 16 5 C -0.25 -6.80 9.70 -15.06 -0.15 -6.95 16 6 H 0.07 1.95 7.94 -52.49 -0.42 1.54 16 7 C 0.00 0.04 4.89 -17.43 -0.09 -0.05 16 8 N -0.89 -25.41 8.63 55.49 0.48 -24.93 16 9 Si 0.90 21.99 29.62 -169.99 -5.04 16.95 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.13 2.61 6.19 -5.19 -0.03 2.58 16 14 C 0.47 9.29 7.51 -10.98 -0.08 9.21 16 15 O -0.51 -12.58 13.70 5.55 0.08 -12.51 16 16 N -0.74 -10.83 3.54 -53.80 -0.19 -11.02 16 17 C 0.15 2.08 2.23 -67.93 -0.15 1.93 16 18 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 19 C -0.13 -1.75 5.60 -26.73 -0.15 -1.90 16 20 C -0.12 -1.33 5.76 -26.73 -0.15 -1.49 16 21 C -0.12 -1.09 5.92 -26.74 -0.16 -1.25 16 22 C -0.11 -1.01 5.03 -26.73 -0.13 -1.15 16 23 C -0.10 -1.00 2.52 -90.62 -0.23 -1.23 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 C -0.15 -1.47 9.03 37.16 0.34 -1.13 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.02 0.62 6.42 -51.93 -0.33 0.29 16 30 H 0.10 2.88 6.36 -51.93 -0.33 2.55 16 31 H 0.09 2.45 5.82 -51.93 -0.30 2.14 16 32 H 0.00 -0.01 7.98 -51.93 -0.41 -0.43 16 33 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 35 H 0.06 1.12 7.95 -51.93 -0.41 0.70 16 36 H 0.39 4.65 6.65 -40.82 -0.27 4.38 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.80 7.60 -51.93 -0.39 0.41 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.56 6.51 -51.93 -0.34 0.22 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.62 7.44 -51.93 -0.39 0.23 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -31.04 355.18 -9.07 -40.11 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.62 Total: 3.43 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.76 Total: -2.82 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.08 Total: -50.52 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.04 Total: 16.95 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.04 -9.07 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060565452.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.348 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds