Wall clock time and date at job start Tue Mar 31 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47277 * 2 1 4 4 N 1.46504 * 109.47394 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00139 * 264.02068 * 4 3 2 6 6 H 1.07997 * 120.00091 * 187.76897 * 5 4 3 7 7 C 1.38819 * 120.00071 * 7.76220 * 5 4 3 8 8 N 1.31615 * 119.99609 * 25.67185 * 7 5 4 9 9 Si 1.86797 * 119.99742 * 205.67104 * 7 5 4 10 10 H 1.48501 * 109.47372 * 84.99129 * 9 7 5 11 11 H 1.48500 * 109.46927 * 204.98873 * 9 7 5 12 12 H 1.48502 * 109.47336 * 324.98398 * 9 7 5 13 13 C 1.46495 * 119.99399 * 84.01538 * 4 3 2 14 14 C 1.50707 * 109.47421 * 270.00055 * 13 4 3 15 15 O 1.21288 * 119.99723 * 0.02562 * 14 13 4 16 16 N 1.34775 * 120.00347 * 180.02562 * 14 13 4 17 17 C 1.46492 * 120.00085 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.47530 * 34.99696 * 17 16 14 19 19 C 1.52998 * 109.47413 * 274.99637 * 17 16 14 20 20 C 1.52998 * 109.46794 * 299.99997 * 19 17 16 21 21 C 1.52995 * 109.47377 * 299.99795 * 20 19 17 22 22 C 1.52996 * 109.47273 * 60.00079 * 21 20 19 23 23 C 1.53002 * 109.47194 * 300.00157 * 22 21 20 24 24 H 1.09002 * 109.46905 * 300.00187 * 23 22 21 25 25 C 1.52996 * 109.47563 * 179.97438 * 23 22 21 26 26 H 1.08996 * 109.47109 * 59.99812 * 1 2 3 27 27 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46781 * 299.99532 * 1 2 3 29 29 H 1.08998 * 109.47032 * 239.99803 * 2 1 3 30 30 H 1.08996 * 109.47109 * 120.00188 * 2 1 3 31 31 H 1.09002 * 109.46775 * 59.99953 * 3 2 1 32 32 H 1.08996 * 109.47204 * 300.00130 * 3 2 1 33 33 H 0.97007 * 119.99375 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46729 * 150.00450 * 13 4 3 35 35 H 1.08993 * 109.47926 * 30.00462 * 13 4 3 36 36 H 0.97004 * 119.99413 * 359.97438 * 16 14 13 37 37 H 1.09001 * 109.46963 * 59.99807 * 19 17 16 38 38 H 1.09001 * 109.47170 * 180.02562 * 19 17 16 39 39 H 1.09001 * 109.47235 * 60.00072 * 20 19 17 40 40 H 1.09005 * 109.47018 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.47330 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.46874 * 299.99862 * 21 20 19 43 43 H 1.09002 * 109.47347 * 60.00073 * 22 21 20 44 44 H 1.09001 * 109.47246 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.46697 * 300.00024 * 25 23 22 46 46 H 1.08994 * 109.47245 * 59.99638 * 25 23 22 47 47 H 1.09000 * 109.47384 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1893 1.5662 1.1803 6 1 5.2618 1.6924 1.1718 7 6 3.5042 1.5295 2.3871 8 7 2.3519 0.8992 2.4708 9 14 4.2181 2.3748 3.8922 10 1 3.8361 3.8098 3.8819 11 1 3.6874 1.7301 5.1202 12 1 5.6982 2.2563 3.8712 13 6 4.2379 1.3100 -1.2609 14 6 4.4892 -0.1485 -1.5452 15 8 4.0945 -0.9941 -0.7705 16 7 5.1526 -0.5132 -2.6603 17 6 5.3963 -1.9310 -2.9369 18 1 4.5491 -2.5205 -2.5866 19 6 6.6658 -2.3813 -2.2112 20 6 7.8550 -1.5539 -2.7030 21 6 8.0295 -1.7570 -4.2094 22 6 6.7601 -1.3067 -4.9351 23 6 5.5708 -2.1341 -4.4433 24 1 5.7522 -3.1890 -4.6491 25 6 4.3012 -1.6835 -5.1686 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.8734 0.8733 3.3142 34 1 5.1904 1.8346 -1.1845 35 1 3.6493 1.7417 -2.0703 36 1 5.4679 0.1631 -3.2800 37 1 6.5415 -2.2366 -1.1380 38 1 6.8473 -3.4361 -2.4174 39 1 7.6737 -0.4990 -2.4972 40 1 8.7594 -1.8745 -2.1857 41 1 8.8771 -1.1679 -4.5597 42 1 8.2109 -2.8119 -4.4151 43 1 6.5787 -0.2518 -4.7293 44 1 6.8843 -1.4518 -6.0083 45 1 4.1201 -0.6286 -4.9623 46 1 4.4252 -1.8277 -6.2418 47 1 3.4538 -2.2726 -4.8179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060565452.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:37 Heat of formation + Delta-G solvation = -50.128746 kcal Electronic energy + Delta-G solvation = -24087.595261 eV Core-core repulsion = 20883.587401 eV Total energy + Delta-G solvation = -3204.007861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11647 -39.19930 -37.40680 -34.42775 -33.71152 -33.40393 -33.15075 -30.94976 -28.42684 -27.34790 -26.95599 -24.13086 -23.27828 -22.33382 -21.87219 -21.28481 -19.86232 -18.70367 -17.96556 -17.07390 -16.52366 -16.18940 -15.93961 -15.60091 -15.39863 -14.96386 -14.77604 -14.69547 -14.43172 -14.18738 -13.76240 -13.66188 -13.38386 -13.13082 -12.91082 -12.81524 -12.72256 -12.55845 -12.43527 -12.36803 -12.23410 -11.94117 -11.83800 -11.78806 -11.56808 -11.36939 -11.17230 -11.04686 -10.88173 -10.57817 -10.18901 -9.71429 -8.77514 -7.74014 -5.06301 1.49126 1.50625 1.57892 2.09757 2.47856 2.62468 3.34490 3.71455 3.73417 3.86276 3.88169 4.21445 4.26963 4.33899 4.52099 4.54484 4.58731 4.60542 4.63987 4.67989 4.73501 4.74592 4.78188 4.87812 4.90405 4.95325 5.00791 5.09899 5.16791 5.20398 5.25063 5.32456 5.37055 5.41646 5.44941 5.48466 5.57025 5.58671 5.64108 5.86769 5.94418 6.31756 6.37953 6.91046 7.25671 7.72195 7.97358 8.34287 9.26722 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.005083 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.673272 B = 5507.616012 C = 6387.621921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 C 0.176 3.824 4 N -0.586 5.586 5 C -0.255 4.255 6 H 0.069 0.931 7 C -0.051 4.051 8 N -0.909 5.909 9 Si 0.957 3.043 10 H -0.283 1.283 11 H -0.302 1.302 12 H -0.278 1.278 13 C 0.125 3.875 14 C 0.471 3.529 15 O -0.564 6.564 16 N -0.716 5.716 17 C 0.152 3.848 18 H 0.044 0.956 19 C -0.127 4.127 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.110 4.110 23 C -0.088 4.088 24 H 0.088 0.912 25 C -0.144 4.144 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.015 0.985 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.025 0.975 33 H 0.242 0.758 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.406 0.594 37 H 0.024 0.976 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.938 -2.688 -18.697 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.144 4.144 3 C 0.051 3.949 4 N -0.305 5.305 5 C -0.385 4.385 6 H 0.087 0.913 7 C -0.247 4.247 8 N -0.555 5.555 9 Si 0.787 3.213 10 H -0.210 1.210 11 H -0.230 1.230 12 H -0.204 1.204 13 C -0.006 4.006 14 C 0.256 3.744 15 O -0.441 6.441 16 N -0.372 5.372 17 C 0.046 3.954 18 H 0.063 0.937 19 C -0.166 4.166 20 C -0.151 4.151 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.107 4.107 24 H 0.106 0.894 25 C -0.201 4.201 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.243 0.757 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.543 -3.272 -17.972 19.764 hybrid contribution 0.235 0.077 1.302 1.325 sum 7.778 -3.195 -16.671 18.671 Atomic orbital electron populations 1.21573 0.96668 0.99973 1.00508 1.21790 0.93927 0.99415 0.99311 1.20849 0.81648 0.94618 0.97762 1.44330 1.02204 1.82124 1.01834 1.19426 0.92071 1.42101 0.84866 0.91298 1.25401 0.98531 1.01118 0.99609 1.70420 1.18153 1.42332 1.24573 0.85426 0.77702 0.78774 0.79394 1.20980 1.22957 1.20378 1.21146 0.98733 0.90664 0.90033 1.23197 0.76450 0.94421 0.80338 1.90679 1.51308 1.54123 1.47995 1.46215 1.58676 1.07976 1.24313 1.20809 0.95997 0.82715 0.95842 0.93723 1.21850 0.95907 1.00470 0.98385 1.21450 0.96705 0.99666 0.97261 1.21512 0.98026 1.02069 0.93372 1.21595 0.93159 0.99410 1.00628 1.21354 0.96387 1.01530 0.91420 0.89408 1.21789 0.96267 1.01341 1.00722 0.92663 0.94112 0.94043 0.96587 0.93122 0.92009 0.95641 0.94796 0.89338 0.88546 0.75716 0.95723 0.90619 0.92747 0.92234 0.90633 0.91364 0.91710 0.89702 0.92702 0.90632 0.94278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 9.91 71.98 0.71 -4.66 16 2 C -0.10 -5.28 4.74 30.59 0.14 -5.14 16 3 C 0.18 8.78 4.92 86.38 0.43 9.20 16 4 N -0.59 -29.50 2.12 -706.34 -1.49 -30.99 16 5 C -0.25 -14.27 9.70 84.04 0.82 -13.45 16 6 H 0.07 3.80 7.94 -2.91 -0.02 3.78 16 7 C -0.05 -2.93 4.89 84.86 0.42 -2.51 16 8 N -0.91 -54.16 8.63 21.65 0.19 -53.97 16 9 Si 0.96 46.34 29.62 68.60 2.03 48.38 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C 0.13 4.88 6.19 85.64 0.53 5.41 16 14 C 0.47 18.82 7.51 87.66 0.66 19.48 16 15 O -0.56 -29.28 13.70 -3.06 -0.04 -29.32 16 16 N -0.72 -20.39 3.54 -442.53 -1.57 -21.96 16 17 C 0.15 4.11 2.23 44.99 0.10 4.21 16 18 H 0.04 1.54 7.58 -2.39 -0.02 1.53 16 19 C -0.13 -3.45 5.60 30.59 0.17 -3.28 16 20 C -0.11 -2.41 5.76 30.59 0.18 -2.23 16 21 C -0.11 -1.66 5.92 30.59 0.18 -1.48 16 22 C -0.11 -1.53 5.03 30.59 0.15 -1.37 16 23 C -0.09 -1.59 2.52 -10.79 -0.03 -1.62 16 24 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 25 C -0.14 -2.55 9.03 71.98 0.65 -1.89 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.02 0.80 6.42 -2.39 -0.02 0.78 16 30 H 0.05 3.07 6.36 -2.39 -0.02 3.06 16 31 H 0.06 3.44 5.82 -2.39 -0.01 3.42 16 32 H 0.03 1.12 7.98 -2.39 -0.02 1.10 16 33 H 0.24 14.20 8.31 -92.70 -0.77 13.43 16 34 H 0.09 3.11 8.03 -2.38 -0.02 3.10 16 35 H 0.10 3.11 7.95 -2.39 -0.02 3.09 16 36 H 0.41 8.80 6.65 -92.71 -0.62 8.18 16 37 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 1.26 7.60 -2.39 -0.02 1.24 16 40 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 0.88 6.51 -2.39 -0.02 0.87 16 44 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.05 1.00 7.44 -2.39 -0.02 0.99 16 46 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 47 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -71.39 355.18 4.53 -66.85 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.31 Total: 20.37 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 5.11 Total: 0.65 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -2.87 Total: -106.92 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.04 Total: -29.32 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.38 kcal Total: -71.39 4.53 -66.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060565452.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.726 kcal (2) G-P(sol) polarization free energy of solvation -71.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds