Wall clock time and date at job start Tue Mar 31 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47111 * 2 1 4 4 N 1.46892 * 109.47322 * 181.22103 * 3 2 1 5 5 C 1.46902 * 111.00323 * 62.04412 * 4 3 2 6 6 C 1.50701 * 109.46633 * 66.05024 * 5 4 3 7 7 O 1.21297 * 120.00125 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00044 * 179.97438 * 6 5 4 9 9 C 1.37095 * 120.00316 * 180.02562 * 8 6 5 10 10 H 1.08009 * 119.99733 * 359.97438 * 9 8 6 11 11 C 1.38951 * 120.00139 * 179.97438 * 9 8 6 12 12 N 1.31418 * 119.99951 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00119 * 0.02562 * 11 9 8 14 14 H 1.48490 * 109.47368 * 89.99640 * 13 11 9 15 15 H 1.48496 * 109.46990 * 210.00145 * 13 11 9 16 16 H 1.48499 * 109.46845 * 329.99741 * 13 11 9 17 17 C 1.46908 * 110.99906 * 298.09520 * 4 3 2 18 18 C 1.53003 * 109.46808 * 290.37099 * 17 4 3 19 19 C 1.52994 * 109.47230 * 296.15174 * 18 17 4 20 20 C 1.52998 * 109.47290 * 180.02562 * 19 18 17 21 21 C 1.52991 * 109.47139 * 59.99709 * 20 19 18 22 22 C 1.52996 * 109.47591 * 300.00119 * 21 20 19 23 23 C 1.53003 * 109.46916 * 60.00119 * 22 21 20 24 24 H 1.08999 * 109.46975 * 300.00037 * 1 2 3 25 25 H 1.08997 * 109.47110 * 60.00113 * 1 2 3 26 26 H 1.08996 * 109.46665 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46975 * 239.99962 * 2 1 3 28 28 H 1.08995 * 109.47428 * 119.99454 * 2 1 3 29 29 H 1.08997 * 109.47412 * 61.21288 * 3 2 1 30 30 H 1.09002 * 109.46687 * 301.22015 * 3 2 1 31 31 H 1.08998 * 109.47359 * 186.04516 * 5 4 3 32 32 H 1.08994 * 109.47514 * 306.05164 * 5 4 3 33 33 H 0.97002 * 119.99673 * 359.97438 * 8 6 5 34 34 H 0.96993 * 119.99996 * 180.02562 * 12 11 9 35 35 H 1.09005 * 109.46653 * 50.36832 * 17 4 3 36 36 H 1.08992 * 109.46934 * 170.37051 * 17 4 3 37 37 H 1.09004 * 109.46831 * 56.15442 * 18 17 4 38 38 H 1.09001 * 109.47040 * 300.00546 * 19 18 17 39 39 H 1.09002 * 109.47341 * 60.00118 * 19 18 17 40 40 H 1.09001 * 109.46848 * 299.99721 * 20 19 18 41 41 H 1.08997 * 109.47309 * 180.02562 * 20 19 18 42 42 H 1.09005 * 109.47268 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.47240 * 60.00253 * 21 20 19 44 44 H 1.09004 * 109.47422 * 300.00417 * 22 21 20 45 45 H 1.08993 * 109.47729 * 179.97438 * 22 21 20 46 46 H 1.08996 * 109.47414 * 180.02562 * 23 22 21 47 47 H 1.09001 * 109.47555 * 59.99974 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4427 -0.0295 5 6 4.0108 0.8085 -1.2558 6 6 3.6282 1.6473 -2.4479 7 8 2.9996 2.6728 -2.2913 8 7 3.9854 1.2585 -3.6879 9 6 3.6378 2.0218 -4.7724 10 1 3.0774 2.9346 -4.6330 11 6 4.0066 1.6213 -6.0508 12 7 3.6730 2.3527 -7.0904 13 14 4.9752 0.0424 -6.2919 14 1 4.0350 -1.0919 -6.4767 15 1 5.8390 0.1701 -7.4931 16 1 5.8220 -0.2061 -5.0976 17 6 4.0593 0.7883 1.1650 18 6 3.7978 1.6636 2.3923 19 6 4.5490 2.9881 2.2435 20 6 4.2879 3.8632 3.4711 21 6 4.7758 3.1385 4.7270 22 6 4.0246 1.8140 4.8759 23 6 4.2857 0.9389 3.6483 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6946 1.9501 0.9006 30 1 1.6589 1.9626 -0.8789 31 1 5.0963 0.7251 -1.2035 32 1 3.5744 -0.1853 -1.3557 33 1 4.4890 0.4390 -3.8130 34 1 3.9300 2.0730 -7.9828 35 1 3.5802 -0.1813 1.3014 36 1 5.1331 0.6488 1.0403 37 1 2.7289 1.8597 2.4776 38 1 5.6178 2.7920 2.1581 39 1 4.2017 3.5043 1.3485 40 1 3.2191 4.0594 3.5568 41 1 4.8227 4.8070 3.3649 42 1 4.5902 3.7621 5.6016 43 1 5.8446 2.9424 4.6413 44 1 2.9558 2.0100 4.9616 45 1 4.3725 1.2975 5.7704 46 1 3.7502 -0.0046 3.7541 47 1 5.3545 0.7427 3.5625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066496445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:45 Heat of formation + Delta-G solvation = -77.707977 kcal Electronic energy + Delta-G solvation = -23318.250440 eV Core-core repulsion = 20113.046654 eV Total energy + Delta-G solvation = -3205.203786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83161 -39.65642 -37.96369 -35.90904 -33.94651 -33.70762 -32.35594 -31.49841 -29.13620 -27.22818 -26.37325 -24.32198 -23.25775 -22.82414 -21.33948 -20.93836 -20.35235 -19.93372 -17.73482 -16.92470 -16.87534 -16.62669 -16.06060 -15.56940 -15.42521 -15.08408 -14.97585 -14.86560 -14.73436 -14.52997 -14.36066 -13.94530 -13.34979 -13.07667 -12.94701 -12.90329 -12.72312 -12.64490 -12.54630 -12.42475 -12.36467 -12.24914 -11.97951 -11.90720 -11.72639 -11.51694 -11.33984 -11.12969 -10.88254 -10.78818 -10.29156 -10.20173 -8.98364 -8.40137 -6.00263 1.29772 1.35068 1.43901 1.99490 2.23316 2.68223 3.16254 3.29868 3.77981 3.94624 3.97873 4.04618 4.08026 4.16295 4.28156 4.37903 4.40286 4.46367 4.51797 4.54546 4.61264 4.65382 4.73866 4.76180 4.81193 4.85452 4.91744 5.01141 5.02334 5.10945 5.21042 5.24737 5.26947 5.33935 5.35287 5.39830 5.45905 5.52166 5.55365 5.65297 5.69137 5.94297 6.12454 6.33397 6.62410 6.91057 7.42604 8.01052 8.77813 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022163 B = 0.003871 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.073743 B = 7232.166516 C = 7662.096137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.157 4.157 3 C 0.054 3.946 4 N -0.529 5.529 5 C 0.050 3.950 6 C 0.454 3.546 7 O -0.603 6.603 8 N -0.595 5.595 9 C -0.325 4.325 10 H 0.054 0.946 11 C -0.016 4.016 12 N -0.937 5.937 13 Si 0.963 3.037 14 H -0.257 1.257 15 H -0.275 1.275 16 H -0.232 1.232 17 C 0.056 3.944 18 C -0.074 4.074 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.108 4.108 24 H 0.063 0.937 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.388 0.612 34 H 0.278 0.722 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 -9.995 23.683 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C -0.074 4.074 4 N -0.251 5.251 5 C -0.081 4.081 6 C 0.242 3.758 7 O -0.487 6.487 8 N -0.237 5.237 9 C -0.454 4.454 10 H 0.072 0.928 11 C -0.214 4.214 12 N -0.578 5.578 13 Si 0.784 3.216 14 H -0.182 1.182 15 H -0.200 1.200 16 H -0.155 1.155 17 C -0.071 4.071 18 C -0.093 4.093 19 C -0.141 4.141 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.146 4.146 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.223 0.777 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.738 -8.758 23.579 25.302 hybrid contribution -0.030 -0.893 -1.191 1.489 sum 2.708 -9.651 22.388 24.530 Atomic orbital electron populations 1.21634 0.94936 1.02094 1.01492 1.22129 0.97329 0.98144 1.01975 1.22243 0.86990 0.95913 1.02227 1.61733 1.08010 1.54616 1.00773 1.21863 1.02342 0.95570 0.88305 1.20906 0.82832 0.87644 0.84435 1.90513 1.44144 1.28267 1.85769 1.42050 1.52119 1.23906 1.05628 1.18987 1.34595 1.06288 0.85508 0.92761 1.26091 0.98715 1.02705 0.93900 1.69808 1.47558 1.40832 0.99573 0.85382 0.78969 0.77468 0.79830 1.18193 1.20019 1.15530 1.22337 1.00123 0.95829 0.88853 1.21078 0.99768 0.94907 0.93549 1.21396 0.99680 0.95822 0.97242 1.21542 1.00736 0.98302 0.95199 1.21518 1.00096 0.96629 0.97089 1.21504 1.00282 0.95686 0.97870 1.21524 1.01538 0.98261 0.93286 0.91782 0.94552 0.91492 0.93004 0.89969 0.90586 0.92788 0.86839 0.90459 0.77684 0.91225 0.92939 0.90280 0.92092 0.92578 0.93762 0.92847 0.92629 0.91640 0.91917 0.92399 0.90889 0.91235 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.91 71.98 0.71 -2.60 16 2 C -0.16 -3.89 5.29 30.60 0.16 -3.72 16 3 C 0.05 1.69 4.83 86.31 0.42 2.10 16 4 N -0.53 -15.99 3.82 -900.78 -3.45 -19.44 16 5 C 0.05 1.60 5.24 85.56 0.45 2.05 16 6 C 0.45 20.94 7.49 87.66 0.66 21.60 16 7 O -0.60 -33.85 13.90 -3.08 -0.04 -33.90 16 8 N -0.59 -28.63 5.09 -306.97 -1.56 -30.19 16 9 C -0.32 -19.32 10.16 84.04 0.85 -18.46 16 10 H 0.05 3.85 7.39 -2.91 -0.02 3.82 16 11 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 12 N -0.94 -57.29 13.96 21.66 0.30 -56.99 16 13 Si 0.96 39.40 27.74 68.60 1.90 41.30 16 14 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 15 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 16 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 17 C 0.06 1.20 4.20 86.30 0.36 1.56 16 18 C -0.07 -1.49 2.16 -10.79 -0.02 -1.51 16 19 C -0.10 -2.42 5.08 30.59 0.16 -2.26 16 20 C -0.12 -2.39 5.92 30.59 0.18 -2.21 16 21 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 22 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 23 C -0.11 -1.62 5.20 30.60 0.16 -1.46 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.39 6.26 -2.39 -0.01 1.37 16 28 H 0.08 1.65 6.31 -2.39 -0.02 1.64 16 29 H 0.08 2.20 6.46 -2.39 -0.02 2.18 16 30 H 0.05 2.23 5.85 -2.39 -0.01 2.22 16 31 H 0.11 3.05 7.89 -2.39 -0.02 3.03 16 32 H 0.08 2.10 6.04 -2.39 -0.01 2.09 16 33 H 0.39 15.54 5.76 -92.71 -0.53 15.00 16 34 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.05 0.98 5.94 -2.38 -0.01 0.97 16 36 H 0.08 1.58 7.86 -2.39 -0.02 1.56 16 37 H 0.06 1.35 6.49 -2.38 -0.02 1.33 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.04 1.35 7.72 -2.39 -0.02 1.33 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -73.55 354.03 2.41 -71.14 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.34 Total: 36.46 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 4.92 Total: -8.39 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -4.71 Total: -106.62 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.04 Total: -33.90 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.90 Total: 41.30 kcal Total: -73.55 2.41 -71.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066496445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.568 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds