Wall clock time and date at job start Tue Mar 31 2020 05:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53000 * 109.46793 * 2 1 4 4 C 1.50693 * 109.47210 * 119.99997 * 2 1 3 5 5 O 1.21286 * 119.99971 * 342.74246 * 4 2 1 6 6 N 1.34774 * 119.99874 * 162.73933 * 4 2 1 7 7 C 1.44689 * 118.54349 * 185.35674 * 6 4 2 8 8 C 1.54942 * 109.52762 * 269.10032 * 7 6 4 9 9 C 1.47542 * 109.73676 * 290.52880 * 8 7 6 10 10 N 1.46271 * 114.37500 * 62.21653 * 9 8 7 11 11 C 1.46894 * 110.99945 * 148.55663 * 10 9 8 12 12 C 1.53004 * 109.47570 * 64.51870 * 11 10 9 13 13 C 1.52996 * 109.47204 * 181.03539 * 12 11 10 14 14 C 1.50703 * 109.46740 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99856 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99655 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00053 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99642 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47251 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46899 * 120.00654 * 18 16 14 21 21 H 1.48498 * 109.47046 * 240.00225 * 18 16 14 22 22 C 1.44767 * 110.63961 * 272.25212 * 10 9 8 23 23 C 1.47777 * 118.55136 * 5.38476 * 6 4 2 24 24 H 1.08991 * 109.47102 * 299.99714 * 1 2 3 25 25 H 1.08995 * 109.46738 * 60.00095 * 1 2 3 26 26 H 1.08999 * 109.46788 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47102 * 240.00286 * 2 1 3 28 28 H 1.09001 * 109.47163 * 172.08439 * 3 2 1 29 29 H 1.08999 * 109.47542 * 292.09176 * 3 2 1 30 30 H 1.09006 * 109.47097 * 52.08916 * 3 2 1 31 31 H 1.08999 * 109.45644 * 149.08528 * 7 6 4 32 32 H 1.08990 * 109.45150 * 29.12013 * 7 6 4 33 33 H 1.08995 * 109.42954 * 170.44605 * 8 7 6 34 34 H 1.09008 * 109.38266 * 50.57853 * 8 7 6 35 35 H 1.08994 * 108.50210 * 300.95474 * 9 8 7 36 36 H 1.09003 * 108.38085 * 183.39182 * 9 8 7 37 37 H 1.09008 * 109.46892 * 304.51602 * 11 10 9 38 38 H 1.09002 * 109.47451 * 184.52111 * 11 10 9 39 39 H 1.09004 * 109.46880 * 301.03242 * 12 11 10 40 40 H 1.08997 * 109.46580 * 61.02891 * 12 11 10 41 41 H 1.09004 * 109.46960 * 299.99654 * 13 12 11 42 42 H 1.08992 * 109.47664 * 59.99719 * 13 12 11 43 43 H 0.97007 * 119.99809 * 179.97438 * 17 16 14 44 44 H 1.08999 * 109.43017 * 214.22813 * 22 10 9 45 45 H 1.09001 * 109.43596 * 334.09641 * 22 10 9 46 46 H 1.08998 * 109.06077 * 258.62292 * 23 6 4 47 47 H 1.09004 * 109.05519 * 17.55143 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2889 -0.8936 2.1709 6 7 3.3080 -1.1422 1.2856 7 6 3.7247 -1.9224 2.4306 8 6 4.2797 -0.9782 3.5266 9 6 5.5630 -0.4006 3.0835 10 7 5.4696 0.4260 1.8803 11 6 6.4675 1.5037 1.9033 12 6 7.8724 0.8991 1.8610 13 6 8.9120 2.0205 1.9110 14 6 10.2957 1.4249 1.8699 15 1 10.4210 0.3536 1.8142 16 6 11.4016 2.2476 1.9035 17 7 11.2489 3.5521 1.9718 18 14 13.1168 1.5092 1.8533 19 1 13.0167 0.0295 1.7783 20 1 13.8396 2.0172 0.6597 21 1 13.8575 1.8941 3.0814 22 6 5.6110 -0.3866 0.6906 23 6 4.2191 -0.7973 0.1745 24 1 -0.3633 0.5137 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8899 28 1 3.1208 1.4459 0.1415 29 1 1.7968 1.9140 -0.9522 30 1 1.5658 1.9956 0.8108 31 1 4.5020 -2.6242 2.1282 32 1 2.8710 -2.4737 2.8244 33 1 4.4343 -1.5418 4.4465 34 1 3.5647 -0.1758 3.7087 35 1 6.2606 -1.2154 2.8899 36 1 5.9626 0.2105 3.8928 37 1 6.3506 2.0877 2.8163 38 1 6.3240 2.1504 1.0376 39 1 8.0094 0.2383 2.7169 40 1 7.9954 0.3303 0.9394 41 1 8.7749 2.6814 1.0550 42 1 8.7889 2.5894 2.8325 43 1 12.0271 4.1309 1.9958 44 1 6.1293 0.1848 -0.0793 45 1 6.1879 -1.2804 0.9283 46 1 4.3234 -1.6614 -0.4816 47 1 3.7916 0.0295 -0.3928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069608736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:14 Heat of formation + Delta-G solvation = -45.122571 kcal Electronic energy + Delta-G solvation = -23423.469852 eV Core-core repulsion = 20219.679076 eV Total energy + Delta-G solvation = -3203.790777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54601 -38.54470 -35.50446 -34.86060 -33.52282 -32.73755 -31.24915 -28.50811 -27.42137 -26.59566 -25.55253 -23.55051 -23.12359 -21.45217 -21.06884 -19.41699 -18.57562 -17.43992 -16.49654 -16.38774 -15.58165 -15.25792 -15.07352 -14.70942 -14.51299 -14.13750 -13.93809 -13.45367 -13.24186 -13.05190 -12.72979 -12.47972 -12.32749 -12.21946 -12.06914 -11.94007 -11.66540 -11.34357 -11.25287 -11.12429 -11.07157 -10.90446 -10.79181 -10.73183 -10.64509 -10.50944 -9.75706 -9.60140 -9.54169 -9.20357 -8.58191 -8.39722 -7.95429 -6.04269 -4.07114 2.64896 3.03335 3.26932 3.34702 3.38290 4.06708 4.39241 4.41931 4.71428 4.85087 4.90049 4.94062 4.99092 5.05301 5.22637 5.30182 5.31573 5.46570 5.49987 5.54848 5.60131 5.63027 5.66784 5.67755 5.74608 5.76286 5.80626 5.89836 6.01925 6.07516 6.11797 6.14229 6.20700 6.34139 6.51569 6.64648 6.73191 6.98084 7.32123 7.35878 7.43446 7.61740 7.75811 7.94946 8.22939 8.37975 9.00072 9.57360 11.06725 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031450 B = 0.003298 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.100158 B = 8487.121852 C = 8847.060973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 C -0.149 4.149 4 C 0.518 3.482 5 O -0.548 6.548 6 N -0.592 5.592 7 C 0.120 3.880 8 C -0.130 4.130 9 C 0.058 3.942 10 N -0.532 5.532 11 C 0.056 3.944 12 C -0.143 4.143 13 C 0.024 3.976 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.042 3.958 23 C 0.106 3.894 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.085 0.915 45 H 0.046 0.954 46 H 0.062 0.938 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.104 -8.750 -4.716 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 C -0.206 4.206 4 C 0.306 3.694 5 O -0.425 6.425 6 N -0.323 5.323 7 C -0.004 4.004 8 C -0.169 4.169 9 C -0.070 4.070 10 N -0.255 5.255 11 C -0.071 4.071 12 C -0.182 4.182 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.071 0.929 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.088 4.088 23 C -0.017 4.017 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.837 -8.489 -4.210 21.086 hybrid contribution 2.109 -0.656 -0.016 2.208 sum -16.729 -9.146 -4.227 19.528 Atomic orbital electron populations 1.21621 0.92867 1.02261 1.02217 1.21300 0.97941 0.97790 0.96578 1.21896 1.02573 0.93531 1.02589 1.20682 0.81577 0.78259 0.88911 1.90655 1.56437 1.56854 1.38598 1.47565 1.10011 1.53015 1.21750 1.21400 0.99772 0.93048 0.86177 1.21347 0.98040 0.99713 0.97767 1.20947 0.96489 0.96266 0.93321 1.61117 1.50467 1.12552 1.01321 1.22471 0.89605 0.92622 1.02423 1.22265 0.95134 1.00586 1.00188 1.19023 0.92299 0.92859 0.97166 1.21280 0.91285 0.92968 1.50372 0.92882 1.25029 0.99259 0.94840 0.95324 1.69972 1.29935 1.02723 1.50753 0.86564 0.84631 0.79331 0.77645 1.19813 1.20973 1.20977 1.22323 0.94831 0.97168 0.94455 1.22358 0.90915 1.00352 0.88085 0.91669 0.92196 0.92603 0.89282 0.90600 0.91718 0.91973 0.91301 0.90287 0.90804 0.90943 0.94631 0.91501 0.91118 0.91034 0.93484 0.93422 0.96614 0.96665 0.93028 0.89665 0.93553 0.91957 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.62 37.16 0.32 -0.89 16 2 C -0.11 -1.10 2.39 -91.77 -0.22 -1.32 16 3 C -0.15 -1.36 8.70 37.16 0.32 -1.04 16 4 C 0.52 6.56 6.81 -10.99 -0.07 6.48 16 5 O -0.55 -8.80 15.47 5.55 0.09 -8.71 16 6 N -0.59 -6.80 2.54 -172.22 -0.44 -7.24 16 7 C 0.12 1.37 5.40 -3.99 -0.02 1.34 16 8 C -0.13 -1.57 6.02 -28.34 -0.17 -1.74 16 9 C 0.06 0.77 3.84 -6.80 -0.03 0.74 16 10 N -0.53 -7.26 4.37 -239.59 -1.05 -8.31 16 11 C 0.06 0.90 4.98 -3.83 -0.02 0.88 16 12 C -0.14 -2.77 4.65 -26.73 -0.12 -2.89 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.04 0.49 4.34 -4.44 -0.02 0.48 16 23 C 0.11 1.03 5.73 -2.81 -0.02 1.02 16 24 H 0.06 0.69 7.92 -51.93 -0.41 0.28 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.69 7.33 -51.93 -0.38 0.31 16 28 H 0.08 0.76 6.00 -51.93 -0.31 0.45 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 31 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.08 0.95 7.33 -51.93 -0.38 0.57 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 35 H 0.04 0.48 7.02 -51.93 -0.36 0.11 16 36 H 0.07 0.96 7.53 -51.93 -0.39 0.56 16 37 H 0.07 1.19 7.91 -51.92 -0.41 0.78 16 38 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.05 0.93 7.19 -51.93 -0.37 0.55 16 40 H 0.05 0.91 6.91 -51.93 -0.36 0.55 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.09 1.01 7.11 -51.93 -0.37 0.64 16 45 H 0.05 0.56 7.14 -51.93 -0.37 0.19 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.80 4.06 -51.93 -0.21 0.59 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -31.59 356.51 -9.43 -41.02 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.52 Total: -2.81 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -0.60 Total: -9.83 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.75 Total: -41.49 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.59 -9.43 -41.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069608736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.105 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds