Wall clock time and date at job start Tue Mar 31 2020 05:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53000 * 109.46793 * 2 1 4 4 C 1.50693 * 109.47210 * 119.99997 * 2 1 3 5 5 O 1.21286 * 119.99971 * 342.74246 * 4 2 1 6 6 N 1.34774 * 119.99874 * 162.73933 * 4 2 1 7 7 C 1.44689 * 118.54349 * 185.35674 * 6 4 2 8 8 C 1.54942 * 109.52762 * 269.10032 * 7 6 4 9 9 C 1.47542 * 109.73676 * 290.52880 * 8 7 6 10 10 N 1.46271 * 114.37500 * 62.21653 * 9 8 7 11 11 C 1.46894 * 110.99945 * 148.55663 * 10 9 8 12 12 C 1.53004 * 109.47570 * 64.51870 * 11 10 9 13 13 C 1.52996 * 109.47204 * 181.03539 * 12 11 10 14 14 C 1.50703 * 109.46740 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99856 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99655 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00053 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99642 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47251 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46899 * 120.00654 * 18 16 14 21 21 H 1.48498 * 109.47046 * 240.00225 * 18 16 14 22 22 C 1.44767 * 110.63961 * 272.25212 * 10 9 8 23 23 C 1.47777 * 118.55136 * 5.38476 * 6 4 2 24 24 H 1.08991 * 109.47102 * 299.99714 * 1 2 3 25 25 H 1.08995 * 109.46738 * 60.00095 * 1 2 3 26 26 H 1.08999 * 109.46788 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47102 * 240.00286 * 2 1 3 28 28 H 1.09001 * 109.47163 * 172.08439 * 3 2 1 29 29 H 1.08999 * 109.47542 * 292.09176 * 3 2 1 30 30 H 1.09006 * 109.47097 * 52.08916 * 3 2 1 31 31 H 1.08999 * 109.45644 * 149.08528 * 7 6 4 32 32 H 1.08990 * 109.45150 * 29.12013 * 7 6 4 33 33 H 1.08995 * 109.42954 * 170.44605 * 8 7 6 34 34 H 1.09008 * 109.38266 * 50.57853 * 8 7 6 35 35 H 1.08994 * 108.50210 * 300.95474 * 9 8 7 36 36 H 1.09003 * 108.38085 * 183.39182 * 9 8 7 37 37 H 1.09008 * 109.46892 * 304.51602 * 11 10 9 38 38 H 1.09002 * 109.47451 * 184.52111 * 11 10 9 39 39 H 1.09004 * 109.46880 * 301.03242 * 12 11 10 40 40 H 1.08997 * 109.46580 * 61.02891 * 12 11 10 41 41 H 1.09004 * 109.46960 * 299.99654 * 13 12 11 42 42 H 1.08992 * 109.47664 * 59.99719 * 13 12 11 43 43 H 0.97007 * 119.99809 * 179.97438 * 17 16 14 44 44 H 1.08999 * 109.43017 * 214.22813 * 22 10 9 45 45 H 1.09001 * 109.43596 * 334.09641 * 22 10 9 46 46 H 1.08998 * 109.06077 * 258.62292 * 23 6 4 47 47 H 1.09004 * 109.05519 * 17.55143 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2889 -0.8936 2.1709 6 7 3.3080 -1.1422 1.2856 7 6 3.7247 -1.9224 2.4306 8 6 4.2797 -0.9782 3.5266 9 6 5.5630 -0.4006 3.0835 10 7 5.4696 0.4260 1.8803 11 6 6.4675 1.5037 1.9033 12 6 7.8724 0.8991 1.8610 13 6 8.9120 2.0205 1.9110 14 6 10.2957 1.4249 1.8699 15 1 10.4210 0.3536 1.8142 16 6 11.4016 2.2476 1.9035 17 7 11.2489 3.5521 1.9718 18 14 13.1168 1.5092 1.8533 19 1 13.0167 0.0295 1.7783 20 1 13.8396 2.0172 0.6597 21 1 13.8575 1.8941 3.0814 22 6 5.6110 -0.3866 0.6906 23 6 4.2191 -0.7973 0.1745 24 1 -0.3633 0.5137 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8899 28 1 3.1208 1.4459 0.1415 29 1 1.7968 1.9140 -0.9522 30 1 1.5658 1.9956 0.8108 31 1 4.5020 -2.6242 2.1282 32 1 2.8710 -2.4737 2.8244 33 1 4.4343 -1.5418 4.4465 34 1 3.5647 -0.1758 3.7087 35 1 6.2606 -1.2154 2.8899 36 1 5.9626 0.2105 3.8928 37 1 6.3506 2.0877 2.8163 38 1 6.3240 2.1504 1.0376 39 1 8.0094 0.2383 2.7169 40 1 7.9954 0.3303 0.9394 41 1 8.7749 2.6814 1.0550 42 1 8.7889 2.5894 2.8325 43 1 12.0271 4.1309 1.9958 44 1 6.1293 0.1848 -0.0793 45 1 6.1879 -1.2804 0.9283 46 1 4.3234 -1.6614 -0.4816 47 1 3.7916 0.0295 -0.3928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069608736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:13 Heat of formation + Delta-G solvation = -64.334124 kcal Electronic energy + Delta-G solvation = -23424.302928 eV Core-core repulsion = 20219.679076 eV Total energy + Delta-G solvation = -3204.623852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50486 -39.66466 -36.71213 -35.72815 -35.32608 -33.79372 -32.92846 -29.81005 -28.19139 -27.80792 -26.95188 -24.69492 -24.40886 -22.78353 -22.25000 -20.70432 -19.49000 -18.54900 -18.26420 -17.49010 -16.71705 -16.47013 -16.31949 -16.08638 -15.58095 -15.49065 -14.99394 -14.61233 -14.41078 -14.20554 -13.90716 -13.81027 -13.51403 -13.37175 -13.05760 -12.95789 -12.85853 -12.76878 -12.53429 -12.47522 -12.34293 -12.18086 -11.97589 -11.91604 -11.76648 -11.68204 -11.41964 -11.37126 -11.27439 -10.58685 -10.56073 -9.51760 -9.17034 -8.20924 -6.32730 1.38069 1.38706 1.51354 1.70320 2.16123 2.39063 2.98537 3.11611 3.56588 3.86798 3.98869 4.02338 4.04639 4.12041 4.14976 4.19043 4.38342 4.44356 4.52537 4.57182 4.65543 4.66385 4.69737 4.79680 4.81979 4.85471 4.91592 4.95783 4.97105 5.00398 5.04149 5.10947 5.17316 5.22862 5.31430 5.35388 5.41454 5.49840 5.71050 5.75931 5.84181 6.12787 6.25039 6.27994 6.47662 6.84754 7.29179 7.36860 8.90053 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031450 B = 0.003298 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.100158 B = 8487.121852 C = 8847.060973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.509 3.491 5 O -0.590 6.590 6 N -0.592 5.592 7 C 0.119 3.881 8 C -0.121 4.121 9 C 0.060 3.940 10 N -0.530 5.530 11 C 0.069 3.931 12 C -0.124 4.124 13 C 0.027 3.973 14 C -0.542 4.542 15 H 0.056 0.944 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.962 3.038 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.280 1.280 22 C 0.038 3.962 23 C 0.108 3.892 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.055 0.945 41 H -0.005 1.005 42 H -0.013 1.013 43 H 0.263 0.737 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.091 0.909 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.860 -10.241 -6.385 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.132 4.132 3 C -0.201 4.201 4 C 0.298 3.702 5 O -0.471 6.471 6 N -0.322 5.322 7 C -0.005 4.005 8 C -0.160 4.160 9 C -0.068 4.068 10 N -0.252 5.252 11 C -0.058 4.058 12 C -0.163 4.163 13 C -0.010 4.010 14 C -0.580 4.580 15 H 0.075 0.925 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.787 3.213 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.205 1.205 22 C -0.091 4.091 23 C -0.014 4.014 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.013 0.987 42 H 0.005 0.995 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.590 -9.997 -5.898 21.916 hybrid contribution 2.029 -0.178 0.521 2.102 sum -16.561 -10.175 -5.376 20.167 Atomic orbital electron populations 1.21608 0.92721 1.02030 1.02378 1.21368 0.98073 0.97794 0.95967 1.21860 1.01754 0.93216 1.03247 1.21314 0.81595 0.77841 0.89401 1.90634 1.57587 1.58577 1.40318 1.47702 1.10073 1.52412 1.22058 1.21406 0.99909 0.93049 0.86091 1.21260 0.96630 0.99238 0.98902 1.20953 0.97097 0.95969 0.92763 1.61183 1.48910 1.12732 1.02389 1.22234 0.88261 0.93282 1.02068 1.22038 0.95366 0.98531 1.00332 1.18927 0.93383 0.93997 0.94721 1.21721 0.92751 0.93305 1.50205 0.92525 1.25964 1.03812 0.95223 0.94808 1.70098 1.31341 1.04201 1.51627 0.85441 0.79118 0.78944 0.77805 1.18654 1.20242 1.20542 1.22439 0.96398 0.96803 0.93505 1.22475 0.89219 1.02073 0.87628 0.93786 0.89703 0.93056 0.86525 0.91371 0.89286 0.93725 0.89448 0.91104 0.89268 0.93450 0.94250 0.92961 0.92305 0.90574 0.93856 0.92599 0.98694 0.99466 0.92780 0.89409 0.93454 0.89129 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.62 71.99 0.62 -1.58 16 2 C -0.11 -1.89 2.39 -11.54 -0.03 -1.92 16 3 C -0.14 -2.35 8.70 71.98 0.63 -1.73 16 4 C 0.51 12.37 6.81 87.65 0.60 12.97 16 5 O -0.59 -19.15 15.47 -3.05 -0.05 -19.20 16 6 N -0.59 -12.55 2.54 -817.18 -2.07 -14.63 16 7 C 0.12 2.56 5.40 87.38 0.47 3.03 16 8 C -0.12 -2.87 6.02 29.55 0.18 -2.69 16 9 C 0.06 1.55 3.84 84.72 0.33 1.88 16 10 N -0.53 -13.90 4.37 -911.93 -3.99 -17.88 16 11 C 0.07 2.21 4.98 86.31 0.43 2.64 16 12 C -0.12 -4.75 4.65 30.59 0.14 -4.61 16 13 C 0.03 1.41 4.97 29.85 0.15 1.56 16 14 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 15 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 16 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 17 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 18 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 C 0.04 0.80 4.34 87.05 0.38 1.18 16 23 C 0.11 1.78 5.73 86.48 0.50 2.27 16 24 H 0.04 0.92 7.92 -2.39 -0.02 0.90 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.12 1.36 7.33 -2.39 -0.02 1.35 16 28 H 0.07 1.23 6.00 -2.39 -0.01 1.22 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 0.88 8.13 -2.38 -0.02 0.86 16 31 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 32 H 0.07 1.66 7.33 -2.39 -0.02 1.65 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.04 1.00 7.02 -2.39 -0.02 0.98 16 36 H 0.05 1.50 7.53 -2.39 -0.02 1.48 16 37 H 0.06 2.01 7.91 -2.38 -0.02 1.99 16 38 H 0.08 2.37 8.08 -2.39 -0.02 2.35 16 39 H 0.04 1.69 7.19 -2.38 -0.02 1.67 16 40 H 0.06 2.05 6.91 -2.39 -0.02 2.04 16 41 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 42 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 43 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 44 H 0.09 1.86 7.11 -2.39 -0.02 1.84 16 45 H 0.05 1.02 7.14 -2.39 -0.02 1.00 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 47 H 0.10 1.48 4.06 -2.38 -0.01 1.47 16 Total: -1.00 -69.31 356.51 2.20 -67.11 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.91 Total: 11.56 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 5.08 Total: -16.73 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -5.77 Total: -88.54 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.05 Total: -19.20 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -69.31 2.20 -67.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069608736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.776 kcal (2) G-P(sol) polarization free energy of solvation -69.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds