Wall clock time and date at job start Tue Mar 31 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47292 * 2 1 4 4 H 1.08998 * 109.47357 * 178.26752 * 3 2 1 5 5 C 1.53003 * 109.47129 * 298.26319 * 3 2 1 6 6 C 1.50693 * 109.47271 * 294.02712 * 5 3 2 7 7 O 1.21286 * 120.00046 * 353.75760 * 6 5 3 8 8 N 1.34773 * 120.00010 * 173.75880 * 6 5 3 9 9 C 1.46967 * 120.59453 * 359.72212 * 8 6 5 10 10 C 1.53812 * 108.40147 * 124.75580 * 9 8 6 11 11 N 1.46971 * 108.57697 * 49.63642 * 10 9 8 12 12 C 1.36942 * 120.59008 * 124.62577 * 11 10 9 13 13 H 1.07997 * 119.99460 * 209.41709 * 12 11 10 14 14 C 1.38807 * 119.99909 * 29.41767 * 12 11 10 15 15 N 1.31615 * 120.00196 * 16.64333 * 14 12 11 16 16 Si 1.86806 * 119.99778 * 196.63560 * 14 12 11 17 17 H 1.48498 * 109.46816 * 90.00335 * 16 14 12 18 18 H 1.48495 * 109.47165 * 210.00143 * 16 14 12 19 19 H 1.48497 * 109.46907 * 330.00394 * 16 14 12 20 20 C 1.46962 * 118.81160 * 304.64664 * 11 10 9 21 21 C 1.46970 * 120.59634 * 179.97438 * 8 6 5 22 22 C 1.52995 * 109.47022 * 58.26675 * 3 2 1 23 23 C 1.53005 * 109.46966 * 180.02562 * 22 3 2 24 24 C 1.52995 * 109.47617 * 60.00000 * 22 3 2 25 25 H 1.09000 * 109.46434 * 301.27924 * 1 2 3 26 26 H 1.09000 * 109.47164 * 61.27736 * 1 2 3 27 27 H 1.08997 * 109.46962 * 181.28251 * 1 2 3 28 28 H 1.09000 * 109.46897 * 239.99818 * 2 1 3 29 29 H 1.09003 * 109.47464 * 120.00487 * 2 1 3 30 30 H 1.08998 * 109.46811 * 54.03111 * 5 3 2 31 31 H 1.09002 * 109.46995 * 174.02181 * 5 3 2 32 32 H 1.09000 * 109.60822 * 244.53763 * 9 8 6 33 33 H 1.09002 * 109.60936 * 5.05266 * 9 8 6 34 34 H 1.09001 * 109.74042 * 289.85516 * 10 9 8 35 35 H 1.08995 * 109.67802 * 169.38830 * 10 9 8 36 36 H 0.97010 * 120.00222 * 180.02562 * 15 14 12 37 37 H 1.08992 * 109.61373 * 295.48328 * 20 11 10 38 38 H 1.09007 * 109.74689 * 175.05541 * 20 11 10 39 39 H 1.09002 * 109.60819 * 354.95103 * 21 8 6 40 40 H 1.09005 * 109.60780 * 115.29000 * 21 8 6 41 41 H 1.09000 * 109.47157 * 299.99674 * 22 3 2 42 42 H 1.09001 * 109.46956 * 299.99206 * 23 22 3 43 43 H 1.09005 * 109.46861 * 180.02562 * 23 22 3 44 44 H 1.08996 * 109.47736 * 59.99946 * 23 22 3 45 45 H 1.09003 * 109.46847 * 300.00182 * 24 22 3 46 46 H 1.09000 * 109.47123 * 59.99654 * 24 22 3 47 47 H 1.08996 * 109.47654 * 180.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4426 0.0311 5 6 1.5661 2.1510 -1.2705 6 6 2.2201 1.5189 -2.4720 7 8 3.0736 0.6703 -2.3216 8 7 1.8567 1.8964 -3.7137 9 6 0.8198 2.9190 -3.9112 10 6 1.4042 4.0404 -4.7868 11 7 2.0335 3.4325 -5.9677 12 6 1.6636 3.8156 -7.2293 13 1 1.7298 3.1140 -8.0477 14 6 1.2036 5.1054 -7.4561 15 7 1.4226 6.0485 -6.5647 16 14 0.2737 5.5027 -9.0269 17 1 -1.1796 5.2890 -8.8092 18 1 0.5153 6.9195 -9.4002 19 1 0.7463 4.6152 -10.1197 20 6 3.0665 2.4060 -5.7703 21 6 2.4864 1.2890 -4.8946 22 6 1.4948 2.1762 1.2268 23 6 2.0043 3.6189 1.2265 24 6 1.9687 1.4677 2.4973 25 1 -0.3632 0.5336 0.8783 26 1 -0.3633 0.4939 -0.9012 27 1 -0.3633 -1.0274 0.0230 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.4834 2.0587 -1.3556 31 1 1.8380 3.2054 -1.2215 32 1 -0.0423 2.4745 -4.4085 33 1 0.5188 3.3260 -2.9458 34 1 2.1505 4.5982 -4.2211 35 1 0.6067 4.7128 -5.1026 36 1 1.1008 6.9499 -6.7230 37 1 3.9310 2.8474 -5.2746 38 1 3.3675 1.9961 -6.7345 39 1 3.2862 0.6191 -4.5788 40 1 1.7411 0.7284 -5.4589 41 1 0.4052 2.1761 1.1957 42 1 3.0939 3.6194 1.2575 43 1 1.6162 4.1415 2.1008 44 1 1.6663 4.1235 0.3214 45 1 1.6054 0.4400 2.4973 46 1 3.0583 1.4678 2.5284 47 1 1.5799 1.9901 3.3713 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073100561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:25 Heat of formation + Delta-G solvation = -32.742276 kcal Electronic energy + Delta-G solvation = -23740.811323 eV Core-core repulsion = 20537.557396 eV Total energy + Delta-G solvation = -3203.253927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.97251 -37.93382 -36.53045 -33.83574 -32.49636 -31.55981 -30.36441 -29.61655 -27.11959 -26.87395 -25.05118 -23.51995 -22.76282 -22.20728 -20.48291 -18.95535 -18.27975 -17.11168 -16.04968 -15.89693 -15.49493 -14.99481 -14.75379 -14.38656 -14.04406 -13.71243 -13.64233 -13.36475 -13.25945 -12.94085 -12.60261 -12.48402 -12.43099 -12.22478 -11.76212 -11.71043 -11.47677 -11.34989 -11.32813 -10.86122 -10.84420 -10.75414 -10.49763 -10.39278 -10.24776 -10.24093 -10.18746 -10.01058 -9.84200 -9.20320 -8.60553 -8.19726 -6.71140 -5.87535 -3.33189 3.07459 3.32817 3.40066 3.41133 3.51806 4.42661 4.66833 4.73925 4.81861 5.05813 5.11358 5.25882 5.28815 5.33184 5.38886 5.50740 5.53575 5.58438 5.62821 5.66827 5.78202 5.80540 5.86563 5.90356 5.96784 5.98175 6.01768 6.05777 6.12925 6.13757 6.20114 6.22923 6.33129 6.39345 6.44019 6.48925 6.57249 6.79282 6.94732 7.21429 7.44167 7.70980 7.98225 8.34880 8.64904 9.10536 9.72683 10.30556 11.20108 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.003972 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.722976 B = 7047.099111 C = 7465.381153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C -0.065 4.065 4 H 0.078 0.922 5 C -0.141 4.141 6 C 0.511 3.489 7 O -0.559 6.559 8 N -0.599 5.599 9 C 0.080 3.920 10 C 0.158 3.842 11 N -0.591 5.591 12 C -0.256 4.256 13 H 0.067 0.933 14 C 0.005 3.995 15 N -0.902 5.902 16 Si 0.905 3.095 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.278 1.278 20 C 0.132 3.868 21 C 0.096 3.904 22 C -0.095 4.095 23 C -0.153 4.153 24 C -0.147 4.147 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.023 0.977 35 H 0.098 0.902 36 H 0.255 0.745 37 H 0.022 0.978 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 -7.297 14.634 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.083 4.083 4 H 0.096 0.904 5 C -0.180 4.180 6 C 0.299 3.701 7 O -0.439 6.439 8 N -0.331 5.331 9 C -0.045 4.045 10 C 0.032 3.968 11 N -0.314 5.314 12 C -0.386 4.386 13 H 0.085 0.915 14 C -0.194 4.194 15 N -0.546 5.546 16 Si 0.734 3.266 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.204 1.204 20 C 0.005 3.995 21 C -0.029 4.029 22 C -0.113 4.113 23 C -0.210 4.210 24 C -0.204 4.204 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.041 0.959 35 H 0.116 0.884 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.129 -7.546 14.658 16.623 hybrid contribution -0.572 0.476 -0.896 1.165 sum -2.702 -7.070 13.762 15.706 Atomic orbital electron populations 1.21907 0.96604 1.01162 1.01636 1.21628 0.95273 0.96453 1.02737 1.20945 1.00965 0.94450 0.91989 0.90400 1.21885 1.01737 1.01380 0.93044 1.20619 0.82706 0.82374 0.84373 1.90602 1.33608 1.33733 1.85970 1.48097 1.39450 1.40125 1.05426 1.22754 0.90293 0.90882 1.00531 1.21238 0.97642 0.91480 0.86473 1.43969 1.40650 1.44190 1.02575 1.19218 1.39021 0.94235 0.86101 0.91517 1.25093 1.01328 0.95134 0.97865 1.70012 1.47392 1.01165 1.36065 0.86256 0.79994 0.77328 0.82986 1.21344 1.21706 1.20365 1.21282 0.91263 0.89821 0.97132 1.22158 0.97716 0.96715 0.86269 1.21206 1.00522 0.94933 0.94638 1.21942 1.01345 0.95995 1.01699 1.21865 1.01281 1.00448 0.96814 0.92626 0.92775 0.93278 0.90563 0.92192 0.89171 0.88714 0.91931 0.91023 0.95856 0.88380 0.93487 0.95955 0.91631 0.90106 0.92195 0.90928 0.92687 0.92941 0.92178 0.92413 0.92774 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.22 37.16 0.34 -1.28 16 2 C -0.12 -1.47 5.08 -26.73 -0.14 -1.61 16 3 C -0.06 -0.78 1.39 -90.62 -0.13 -0.90 16 4 H 0.08 1.08 7.83 -51.93 -0.41 0.67 16 5 C -0.14 -1.86 3.18 -27.88 -0.09 -1.95 16 6 C 0.51 8.75 7.29 -10.99 -0.08 8.67 16 7 O -0.56 -10.92 13.69 5.55 0.08 -10.84 16 8 N -0.60 -10.85 2.94 -172.23 -0.51 -11.35 16 9 C 0.08 1.42 6.50 -3.36 -0.02 1.40 16 10 C 0.16 3.56 5.52 -3.36 -0.02 3.55 16 11 N -0.59 -14.42 2.96 -171.79 -0.51 -14.93 16 12 C -0.26 -6.81 9.57 -15.06 -0.14 -6.96 16 13 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 14 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 15 N -0.90 -25.25 11.23 55.49 0.62 -24.63 16 16 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C 0.13 2.80 6.67 -3.62 -0.02 2.77 16 21 C 0.10 1.79 6.59 -3.62 -0.02 1.76 16 22 C -0.09 -0.92 2.11 -90.62 -0.19 -1.11 16 23 C -0.15 -1.48 8.85 37.16 0.33 -1.15 16 24 C -0.15 -1.30 8.84 37.15 0.33 -0.97 16 25 H 0.05 0.51 6.32 -51.93 -0.33 0.18 16 26 H 0.05 0.59 6.41 -51.93 -0.33 0.26 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.12 6.24 -51.93 -0.32 0.80 16 29 H 0.06 0.65 6.52 -51.93 -0.34 0.31 16 30 H 0.09 1.08 5.65 -51.93 -0.29 0.78 16 31 H 0.09 1.21 5.98 -51.93 -0.31 0.90 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.06 5.92 -51.93 -0.31 0.75 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 2.43 6.05 -51.93 -0.31 2.12 16 36 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 1.33 7.94 -51.92 -0.41 0.92 16 39 H 0.08 1.49 6.99 -51.93 -0.36 1.12 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 0.68 6.37 -51.93 -0.33 0.35 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.60 6.30 -51.93 -0.33 0.27 16 45 H 0.06 0.50 6.47 -51.93 -0.34 0.16 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -29.44 347.91 -8.12 -37.56 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -8.08 Total: 0.69 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 0.06 Total: 2.27 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.39 Total: -50.90 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.44 -8.12 -37.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.815 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds