Wall clock time and date at job start Tue Mar 31 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47292 * 2 1 4 4 H 1.08998 * 109.47357 * 178.26752 * 3 2 1 5 5 C 1.53003 * 109.47129 * 298.26319 * 3 2 1 6 6 C 1.50693 * 109.47271 * 294.02712 * 5 3 2 7 7 O 1.21286 * 120.00046 * 353.75760 * 6 5 3 8 8 N 1.34773 * 120.00010 * 173.75880 * 6 5 3 9 9 C 1.46967 * 120.59453 * 359.72212 * 8 6 5 10 10 C 1.53812 * 108.40147 * 124.75580 * 9 8 6 11 11 N 1.46971 * 108.57697 * 49.63642 * 10 9 8 12 12 C 1.36942 * 120.59008 * 124.62577 * 11 10 9 13 13 H 1.07997 * 119.99460 * 209.41709 * 12 11 10 14 14 C 1.38807 * 119.99909 * 29.41767 * 12 11 10 15 15 N 1.31615 * 120.00196 * 16.64333 * 14 12 11 16 16 Si 1.86806 * 119.99778 * 196.63560 * 14 12 11 17 17 H 1.48498 * 109.46816 * 90.00335 * 16 14 12 18 18 H 1.48495 * 109.47165 * 210.00143 * 16 14 12 19 19 H 1.48497 * 109.46907 * 330.00394 * 16 14 12 20 20 C 1.46962 * 118.81160 * 304.64664 * 11 10 9 21 21 C 1.46970 * 120.59634 * 179.97438 * 8 6 5 22 22 C 1.52995 * 109.47022 * 58.26675 * 3 2 1 23 23 C 1.53005 * 109.46966 * 180.02562 * 22 3 2 24 24 C 1.52995 * 109.47617 * 60.00000 * 22 3 2 25 25 H 1.09000 * 109.46434 * 301.27924 * 1 2 3 26 26 H 1.09000 * 109.47164 * 61.27736 * 1 2 3 27 27 H 1.08997 * 109.46962 * 181.28251 * 1 2 3 28 28 H 1.09000 * 109.46897 * 239.99818 * 2 1 3 29 29 H 1.09003 * 109.47464 * 120.00487 * 2 1 3 30 30 H 1.08998 * 109.46811 * 54.03111 * 5 3 2 31 31 H 1.09002 * 109.46995 * 174.02181 * 5 3 2 32 32 H 1.09000 * 109.60822 * 244.53763 * 9 8 6 33 33 H 1.09002 * 109.60936 * 5.05266 * 9 8 6 34 34 H 1.09001 * 109.74042 * 289.85516 * 10 9 8 35 35 H 1.08995 * 109.67802 * 169.38830 * 10 9 8 36 36 H 0.97010 * 120.00222 * 180.02562 * 15 14 12 37 37 H 1.08992 * 109.61373 * 295.48328 * 20 11 10 38 38 H 1.09007 * 109.74689 * 175.05541 * 20 11 10 39 39 H 1.09002 * 109.60819 * 354.95103 * 21 8 6 40 40 H 1.09005 * 109.60780 * 115.29000 * 21 8 6 41 41 H 1.09000 * 109.47157 * 299.99674 * 22 3 2 42 42 H 1.09001 * 109.46956 * 299.99206 * 23 22 3 43 43 H 1.09005 * 109.46861 * 180.02562 * 23 22 3 44 44 H 1.08996 * 109.47736 * 59.99946 * 23 22 3 45 45 H 1.09003 * 109.46847 * 300.00182 * 24 22 3 46 46 H 1.09000 * 109.47123 * 59.99654 * 24 22 3 47 47 H 1.08996 * 109.47654 * 180.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4426 0.0311 5 6 1.5661 2.1510 -1.2705 6 6 2.2201 1.5189 -2.4720 7 8 3.0736 0.6703 -2.3216 8 7 1.8567 1.8964 -3.7137 9 6 0.8198 2.9190 -3.9112 10 6 1.4042 4.0404 -4.7868 11 7 2.0335 3.4325 -5.9677 12 6 1.6636 3.8156 -7.2293 13 1 1.7298 3.1140 -8.0477 14 6 1.2036 5.1054 -7.4561 15 7 1.4226 6.0485 -6.5647 16 14 0.2737 5.5027 -9.0269 17 1 -1.1796 5.2890 -8.8092 18 1 0.5153 6.9195 -9.4002 19 1 0.7463 4.6152 -10.1197 20 6 3.0665 2.4060 -5.7703 21 6 2.4864 1.2890 -4.8946 22 6 1.4948 2.1762 1.2268 23 6 2.0043 3.6189 1.2265 24 6 1.9687 1.4677 2.4973 25 1 -0.3632 0.5336 0.8783 26 1 -0.3633 0.4939 -0.9012 27 1 -0.3633 -1.0274 0.0230 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.4834 2.0587 -1.3556 31 1 1.8380 3.2054 -1.2215 32 1 -0.0423 2.4745 -4.4085 33 1 0.5188 3.3260 -2.9458 34 1 2.1505 4.5982 -4.2211 35 1 0.6067 4.7128 -5.1026 36 1 1.1008 6.9499 -6.7230 37 1 3.9310 2.8474 -5.2746 38 1 3.3675 1.9961 -6.7345 39 1 3.2862 0.6191 -4.5788 40 1 1.7411 0.7284 -5.4589 41 1 0.4052 2.1761 1.1957 42 1 3.0939 3.6194 1.2575 43 1 1.6162 4.1415 2.1008 44 1 1.6663 4.1235 0.3214 45 1 1.6054 0.4400 2.4973 46 1 3.0583 1.4678 2.5284 47 1 1.5799 1.9901 3.3713 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073100561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:24 Heat of formation + Delta-G solvation = -48.302188 kcal Electronic energy + Delta-G solvation = -23741.486051 eV Core-core repulsion = 20537.557396 eV Total energy + Delta-G solvation = -3203.928655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.30252 -39.13223 -38.00664 -35.57750 -33.47787 -33.18414 -31.99495 -30.82644 -28.65822 -27.77055 -26.25658 -25.19969 -24.31056 -23.17966 -22.05157 -20.23742 -19.50541 -18.69723 -17.69655 -17.02974 -16.95312 -16.54120 -15.93664 -15.60099 -15.47084 -15.32524 -15.01205 -14.82849 -14.79176 -14.01853 -13.79174 -13.65455 -13.36585 -13.24043 -13.12307 -13.02286 -12.71594 -12.66883 -12.50925 -12.37829 -12.21995 -12.14993 -12.02289 -11.91296 -11.67055 -11.64962 -11.32288 -11.10518 -11.09966 -10.64176 -10.53267 -9.77708 -8.64688 -7.89212 -5.39011 1.49039 1.50475 1.59106 1.70702 2.10826 2.51252 3.25426 3.57223 3.59822 3.81570 3.92350 4.08703 4.23283 4.24321 4.26960 4.38919 4.44971 4.53443 4.57360 4.58546 4.64529 4.68203 4.70173 4.78208 4.81885 4.85366 4.87380 5.03669 5.06113 5.10455 5.14287 5.19586 5.22654 5.25708 5.35981 5.39265 5.49622 5.54264 5.59246 5.61972 5.68036 5.70677 6.35590 6.55962 7.10704 7.25381 7.77584 8.31992 9.15742 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.003972 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.722976 B = 7047.099111 C = 7465.381153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.060 4.060 4 H 0.054 0.946 5 C -0.136 4.136 6 C 0.508 3.492 7 O -0.584 6.584 8 N -0.606 5.606 9 C 0.096 3.904 10 C 0.163 3.837 11 N -0.608 5.608 12 C -0.269 4.269 13 H 0.067 0.933 14 C -0.042 4.042 15 N -0.932 5.932 16 Si 0.969 3.031 17 H -0.281 1.281 18 H -0.296 1.296 19 H -0.272 1.272 20 C 0.133 3.867 21 C 0.106 3.894 22 C -0.088 4.088 23 C -0.154 4.154 24 C -0.146 4.146 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.107 0.893 34 H -0.001 1.001 35 H 0.074 0.926 36 H 0.252 0.748 37 H 0.006 0.994 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.046 0.954 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.150 -7.793 15.786 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.079 4.079 4 H 0.072 0.928 5 C -0.175 4.175 6 C 0.298 3.702 7 O -0.466 6.466 8 N -0.338 5.338 9 C -0.028 4.028 10 C 0.037 3.963 11 N -0.332 5.332 12 C -0.399 4.399 13 H 0.085 0.915 14 C -0.238 4.238 15 N -0.577 5.577 16 Si 0.797 3.203 17 H -0.207 1.207 18 H -0.223 1.223 19 H -0.196 1.196 20 C 0.006 3.994 21 C -0.019 4.019 22 C -0.106 4.106 23 C -0.211 4.211 24 C -0.203 4.203 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.017 0.983 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.738 -8.066 15.825 18.151 hybrid contribution 0.029 0.604 -1.240 1.380 sum -3.709 -7.462 14.585 16.798 Atomic orbital electron populations 1.21880 0.95036 1.01809 1.02185 1.21567 0.96582 0.96037 1.01627 1.20905 0.99627 0.94856 0.92546 0.92756 1.21954 1.02574 1.01405 0.91549 1.21318 0.82176 0.81847 0.84830 1.90595 1.34749 1.34935 1.86286 1.48193 1.39668 1.40262 1.05691 1.22544 0.89717 0.89163 1.01341 1.21093 0.96192 0.92631 0.86375 1.44237 1.41690 1.44721 1.02553 1.19512 1.38796 0.94426 0.87117 0.91524 1.25804 1.02264 0.94975 1.00799 1.70155 1.48484 1.01281 1.37807 0.85251 0.78786 0.76578 0.79689 1.20736 1.22270 1.19644 1.21328 0.90307 0.89837 0.97882 1.21943 0.97974 0.95617 0.86336 1.21170 1.01096 0.94631 0.93751 1.21958 1.00886 0.96074 1.02204 1.21858 1.00933 1.00735 0.96787 0.90843 0.93255 0.92777 0.93711 0.91298 0.87070 0.87980 0.91324 0.87500 0.98259 0.90770 0.93840 0.97582 0.91131 0.89874 0.91418 0.89621 0.93547 0.91533 0.92521 0.92065 0.93467 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.22 71.98 0.66 -2.08 16 2 C -0.12 -2.70 5.08 30.59 0.16 -2.54 16 3 C -0.06 -1.36 1.39 -10.80 -0.02 -1.37 16 4 H 0.05 1.48 7.83 -2.39 -0.02 1.46 16 5 C -0.14 -3.32 3.18 29.85 0.10 -3.23 16 6 C 0.51 16.92 7.29 87.66 0.64 17.56 16 7 O -0.58 -22.75 13.69 -3.05 -0.04 -22.79 16 8 N -0.61 -21.35 2.94 -817.21 -2.40 -23.76 16 9 C 0.10 3.28 6.50 86.56 0.56 3.84 16 10 C 0.16 7.41 5.52 86.56 0.48 7.89 16 11 N -0.61 -29.95 2.96 -697.43 -2.07 -32.01 16 12 C -0.27 -14.35 9.57 84.03 0.80 -13.54 16 13 H 0.07 3.49 7.88 -2.91 -0.02 3.46 16 14 C -0.04 -2.28 4.92 84.86 0.42 -1.86 16 15 N -0.93 -52.92 11.23 21.65 0.24 -52.68 16 16 Si 0.97 43.23 29.59 68.60 2.03 45.26 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 C 0.13 5.68 6.67 86.40 0.58 6.26 16 21 C 0.11 3.90 6.59 86.40 0.57 4.47 16 22 C -0.09 -1.50 2.11 -10.80 -0.02 -1.52 16 23 C -0.15 -2.65 8.85 71.98 0.64 -2.01 16 24 C -0.15 -2.22 8.84 71.98 0.64 -1.58 16 25 H 0.07 1.07 6.32 -2.39 -0.02 1.06 16 26 H 0.05 0.94 6.41 -2.39 -0.02 0.92 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 28 H 0.04 1.29 6.24 -2.39 -0.01 1.28 16 29 H 0.07 1.39 6.52 -2.39 -0.02 1.38 16 30 H 0.11 2.29 5.65 -2.39 -0.01 2.28 16 31 H 0.10 2.41 5.98 -2.39 -0.01 2.39 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.11 2.88 5.92 -2.39 -0.01 2.86 16 34 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 35 H 0.07 3.73 6.05 -2.39 -0.01 3.71 16 36 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 37 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.07 2.88 7.94 -2.38 -0.02 2.86 16 39 H 0.08 3.04 6.99 -2.39 -0.02 3.02 16 40 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 41 H 0.09 1.27 6.37 -2.39 -0.02 1.26 16 42 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.06 1.01 6.30 -2.39 -0.02 0.99 16 45 H 0.06 0.89 6.47 -2.39 -0.02 0.87 16 46 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -63.71 347.91 4.89 -58.81 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.93 Total: 16.87 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 6.20 Total: 10.29 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -4.23 Total: -108.44 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.04 Total: -22.79 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -63.71 4.89 -58.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.513 kcal (2) G-P(sol) polarization free energy of solvation -63.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds