Wall clock time and date at job start Tue Mar 31 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46933 * 2 1 4 4 H 1.08998 * 109.46482 * 183.22551 * 3 2 1 5 5 C 1.52994 * 109.46968 * 63.22905 * 3 2 1 6 6 C 1.50702 * 109.47463 * 64.99915 * 5 3 2 7 7 O 1.21286 * 119.99972 * 0.02562 * 6 5 3 8 8 N 1.34778 * 120.00494 * 179.97438 * 6 5 3 9 9 C 1.46957 * 120.59733 * 180.02562 * 8 6 5 10 10 C 1.53368 * 108.63577 * 235.24851 * 9 8 6 11 11 N 1.46965 * 108.63299 * 310.57190 * 10 9 8 12 12 C 1.36932 * 120.59553 * 235.20185 * 11 10 9 13 13 H 1.08001 * 120.00093 * 26.00477 * 12 11 10 14 14 C 1.38817 * 120.00175 * 205.72120 * 12 11 10 15 15 N 1.31613 * 120.00194 * 217.81830 * 14 12 11 16 16 Si 1.86803 * 119.99745 * 37.82012 * 14 12 11 17 17 H 1.48502 * 109.47281 * 95.34347 * 16 14 12 18 18 H 1.48503 * 109.46874 * 215.34643 * 16 14 12 19 19 H 1.48499 * 109.46990 * 335.34141 * 16 14 12 20 20 C 1.46972 * 118.80943 * 55.47692 * 11 10 9 21 21 C 1.46969 * 120.58990 * 0.02562 * 8 6 5 22 22 C 1.52994 * 109.46975 * 303.22619 * 3 2 1 23 23 C 1.53002 * 109.46674 * 184.25581 * 22 3 2 24 24 C 1.52995 * 109.47524 * 304.25350 * 22 3 2 25 25 H 1.09001 * 109.47439 * 299.47251 * 1 2 3 26 26 H 1.09005 * 109.46822 * 59.47401 * 1 2 3 27 27 H 1.08998 * 109.47032 * 179.47263 * 1 2 3 28 28 H 1.09000 * 109.47500 * 240.00265 * 2 1 3 29 29 H 1.09001 * 109.47198 * 119.99743 * 2 1 3 30 30 H 1.08998 * 109.47459 * 304.99915 * 5 3 2 31 31 H 1.09005 * 109.46925 * 184.99556 * 5 3 2 32 32 H 1.08995 * 109.61572 * 115.50094 * 9 8 6 33 33 H 1.09007 * 109.61050 * 354.98896 * 9 8 6 34 34 H 1.08999 * 109.61399 * 190.82737 * 10 9 8 35 35 H 1.09003 * 109.61359 * 70.31537 * 10 9 8 36 36 H 0.97002 * 120.00437 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.60774 * 64.26806 * 20 11 10 38 38 H 1.09004 * 109.60570 * 184.77622 * 20 11 10 39 39 H 1.09003 * 109.60802 * 244.49920 * 21 8 6 40 40 H 1.09004 * 109.60865 * 4.83786 * 21 8 6 41 41 H 1.09004 * 109.47309 * 64.25909 * 22 3 2 42 42 H 1.08995 * 109.47488 * 60.00367 * 23 22 3 43 43 H 1.09005 * 109.46770 * 180.02562 * 23 22 3 44 44 H 1.09004 * 109.47040 * 299.99861 * 23 22 3 45 45 H 1.08996 * 109.47596 * 186.18261 * 24 22 3 46 46 H 1.08997 * 109.47007 * 306.18748 * 24 22 3 47 47 H 1.09003 * 109.47204 * 66.18284 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1284 1.4430 -0.0578 5 6 1.5974 2.1399 1.2878 6 6 2.2622 1.4820 2.4695 7 8 3.0163 0.5476 2.2983 8 7 2.0198 1.9325 3.7163 9 6 2.6615 1.3011 4.8778 10 6 1.5705 0.8650 5.8636 11 7 0.6593 1.9964 6.0861 12 6 0.4122 2.4536 7.3530 13 1 1.1458 2.3083 8.1322 14 6 -0.7787 3.1090 7.6344 15 7 -0.7871 4.1323 8.4620 16 14 -2.3695 2.5383 6.8386 17 1 -3.0802 1.6149 7.7593 18 1 -3.2307 3.7144 6.5548 19 1 -2.0622 1.8320 5.5690 20 6 0.0132 2.6244 4.9249 21 6 1.1088 3.0642 3.9387 22 6 1.4647 2.1868 -1.2066 23 6 2.0572 3.5962 -1.2663 24 6 1.8183 1.4302 -2.4886 25 1 -0.3634 0.5056 0.8947 26 1 -0.3633 0.5220 -0.8853 27 1 -0.3633 -1.0276 -0.0095 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5150 2.0616 1.3900 31 1 1.8836 3.1910 1.2487 32 1 3.3272 2.0158 5.3616 33 1 3.2302 0.4298 4.5528 34 1 2.0274 0.5719 6.8089 35 1 1.0154 0.0247 5.4468 36 1 -1.6192 4.5906 8.6584 37 1 -0.6502 1.9064 4.4428 38 1 -0.5587 3.4935 5.2502 39 1 1.6641 3.9044 4.3557 40 1 0.6544 3.3593 2.9929 41 1 0.3809 2.2521 -1.1104 42 1 3.1410 3.5310 -1.3626 43 1 1.6471 4.1266 -2.1258 44 1 1.8053 4.1352 -0.3530 45 1 1.5050 2.0147 -3.3536 46 1 2.8955 1.2689 -2.5299 47 1 1.3064 0.4680 -2.4955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073100562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:29 Heat of formation + Delta-G solvation = -23.770451 kcal Electronic energy + Delta-G solvation = -23885.137215 eV Core-core repulsion = 20682.272336 eV Total energy + Delta-G solvation = -3202.864879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.11187 -38.07791 -36.73995 -33.93639 -32.50349 -31.75482 -30.87915 -29.80770 -27.26884 -26.98692 -25.14569 -23.35324 -23.18562 -22.31898 -20.69029 -18.99145 -18.48216 -17.18080 -16.34616 -15.87672 -15.47280 -15.13482 -14.96922 -14.47978 -14.29546 -14.01883 -13.83249 -13.61572 -13.06804 -12.88670 -12.63807 -12.58294 -12.51208 -12.28556 -12.17842 -11.92704 -11.82217 -11.58978 -11.36662 -11.06058 -10.94448 -10.82212 -10.48422 -10.45902 -10.39928 -10.29305 -10.22497 -10.19117 -9.51823 -9.29470 -8.72255 -8.20727 -7.05206 -6.13198 -3.30651 2.94017 3.31047 3.37292 3.45791 3.50990 4.48771 4.57286 4.66716 4.74857 4.82579 4.98675 5.02317 5.21794 5.24123 5.34661 5.41308 5.46226 5.49901 5.57306 5.59866 5.60931 5.63029 5.70478 5.79033 5.82024 5.90811 5.94274 5.96184 6.00091 6.06838 6.08562 6.12354 6.17047 6.25978 6.31004 6.43980 6.49479 6.55949 6.56615 6.73817 6.95855 7.81031 7.84897 8.21273 8.51391 8.85097 9.63785 10.03937 11.01093 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.004475 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.293719 B = 6255.643197 C = 6559.877411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.126 4.126 3 C -0.063 4.063 4 H 0.075 0.925 5 C -0.141 4.141 6 C 0.511 3.489 7 O -0.554 6.554 8 N -0.601 5.601 9 C 0.096 3.904 10 C 0.133 3.867 11 N -0.599 5.599 12 C -0.276 4.276 13 H 0.083 0.917 14 C 0.040 3.960 15 N -0.877 5.877 16 Si 0.832 3.168 17 H -0.292 1.292 18 H -0.293 1.293 19 H -0.258 1.258 20 C 0.132 3.868 21 C 0.086 3.914 22 C -0.095 4.095 23 C -0.151 4.151 24 C -0.146 4.146 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.025 0.975 36 H 0.263 0.737 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 -2.645 -18.970 19.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.164 4.164 3 C -0.082 4.082 4 H 0.094 0.906 5 C -0.181 4.181 6 C 0.300 3.700 7 O -0.433 6.433 8 N -0.333 5.333 9 C -0.028 4.028 10 C 0.006 3.994 11 N -0.323 5.323 12 C -0.403 4.403 13 H 0.100 0.900 14 C -0.161 4.161 15 N -0.517 5.517 16 Si 0.659 3.341 17 H -0.220 1.220 18 H -0.220 1.220 19 H -0.183 1.183 20 C 0.005 3.995 21 C -0.039 4.039 22 C -0.113 4.113 23 C -0.208 4.208 24 C -0.204 4.204 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.073 -2.987 -18.911 19.574 hybrid contribution -1.225 -0.121 -0.136 1.238 sum 2.848 -3.108 -19.047 19.508 Atomic orbital electron populations 1.21906 0.96604 1.01278 1.01545 1.21687 0.95277 0.96291 1.03095 1.20942 1.00678 0.94715 0.91838 0.90617 1.21878 1.01997 1.00957 0.93266 1.20635 0.81708 0.83587 0.84080 1.90601 1.38150 1.29333 1.85237 1.48069 1.45652 1.33636 1.05953 1.22172 0.96217 0.98155 0.86290 1.21341 0.91132 0.89774 0.97136 1.44296 1.51867 1.33481 1.02607 1.18780 1.00854 1.33711 0.86972 0.89954 1.25178 0.97683 0.96632 0.96639 1.70128 1.27076 1.16409 1.38078 0.87635 0.86491 0.79395 0.80557 1.21973 1.22007 1.18275 1.21772 0.92750 0.97173 0.87796 1.22581 0.92812 0.88513 0.99995 1.21204 1.00504 0.94860 0.94758 1.21925 1.00989 0.96320 1.01596 1.21862 1.01571 1.00250 0.96683 0.92808 0.92727 0.93218 0.92279 0.89948 0.88881 0.89056 0.91668 0.89764 0.90808 0.95701 0.92696 0.95035 0.90478 0.90977 0.90751 0.90914 0.92738 0.92903 0.92425 0.93072 0.92766 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.13 37.16 0.34 -1.35 16 2 C -0.13 -1.49 4.93 -26.73 -0.13 -1.63 16 3 C -0.06 -0.70 1.40 -90.62 -0.13 -0.83 16 4 H 0.08 0.95 7.95 -51.93 -0.41 0.54 16 5 C -0.14 -1.72 3.21 -27.89 -0.09 -1.81 16 6 C 0.51 8.15 7.39 -10.98 -0.08 8.07 16 7 O -0.55 -10.15 13.38 5.55 0.07 -10.07 16 8 N -0.60 -10.15 2.95 -172.20 -0.51 -10.66 16 9 C 0.10 1.68 6.59 -3.60 -0.02 1.65 16 10 C 0.13 2.61 6.67 -3.60 -0.02 2.58 16 11 N -0.60 -13.72 2.72 -171.75 -0.47 -14.18 16 12 C -0.28 -7.40 9.85 -15.06 -0.15 -7.55 16 13 H 0.08 2.35 8.05 -52.49 -0.42 1.93 16 14 C 0.04 1.11 4.80 -17.43 -0.08 1.03 16 15 N -0.88 -25.64 13.97 55.49 0.78 -24.87 16 16 Si 0.83 20.43 26.44 -169.99 -4.49 15.93 16 17 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.26 -6.02 5.00 56.52 0.28 -5.74 16 20 C 0.13 2.69 4.58 -3.35 -0.02 2.68 16 21 C 0.09 1.41 6.52 -3.35 -0.02 1.39 16 22 C -0.09 -0.86 1.94 -90.62 -0.18 -1.03 16 23 C -0.15 -1.28 8.94 37.16 0.33 -0.94 16 24 C -0.15 -1.22 8.47 37.15 0.31 -0.90 16 25 H 0.05 0.63 6.43 -51.93 -0.33 0.29 16 26 H 0.05 0.51 6.12 -51.93 -0.32 0.19 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.64 6.69 -51.93 -0.35 0.29 16 29 H 0.08 1.22 5.90 -51.93 -0.31 0.91 16 30 H 0.09 1.08 5.87 -51.93 -0.30 0.78 16 31 H 0.09 0.98 6.08 -51.93 -0.32 0.67 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.44 6.99 -51.93 -0.36 1.08 16 34 H 0.07 1.41 7.92 -51.93 -0.41 0.99 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.03 0.65 6.80 -51.93 -0.35 0.30 16 38 H 0.08 1.68 5.54 -51.93 -0.29 1.40 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.07 0.98 5.91 -51.93 -0.31 0.67 16 41 H 0.07 0.65 6.61 -51.93 -0.34 0.31 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.48 6.44 -51.93 -0.33 0.15 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.48 6.46 -51.93 -0.34 0.15 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -30.05 342.32 -7.53 -37.58 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.13 Total: -0.25 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 0.06 Total: 1.37 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.20 Total: -49.71 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.49 Total: 15.93 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.05 -7.53 -37.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.805 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds