Wall clock time and date at job start Tue Mar 31 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46933 * 2 1 4 4 H 1.08998 * 109.46482 * 183.22551 * 3 2 1 5 5 C 1.52994 * 109.46968 * 63.22905 * 3 2 1 6 6 C 1.50702 * 109.47463 * 64.99915 * 5 3 2 7 7 O 1.21286 * 119.99972 * 0.02562 * 6 5 3 8 8 N 1.34778 * 120.00494 * 179.97438 * 6 5 3 9 9 C 1.46957 * 120.59733 * 180.02562 * 8 6 5 10 10 C 1.53368 * 108.63577 * 235.24851 * 9 8 6 11 11 N 1.46965 * 108.63299 * 310.57190 * 10 9 8 12 12 C 1.36932 * 120.59553 * 235.20185 * 11 10 9 13 13 H 1.08001 * 120.00093 * 26.00477 * 12 11 10 14 14 C 1.38817 * 120.00175 * 205.72120 * 12 11 10 15 15 N 1.31613 * 120.00194 * 217.81830 * 14 12 11 16 16 Si 1.86803 * 119.99745 * 37.82012 * 14 12 11 17 17 H 1.48502 * 109.47281 * 95.34347 * 16 14 12 18 18 H 1.48503 * 109.46874 * 215.34643 * 16 14 12 19 19 H 1.48499 * 109.46990 * 335.34141 * 16 14 12 20 20 C 1.46972 * 118.80943 * 55.47692 * 11 10 9 21 21 C 1.46969 * 120.58990 * 0.02562 * 8 6 5 22 22 C 1.52994 * 109.46975 * 303.22619 * 3 2 1 23 23 C 1.53002 * 109.46674 * 184.25581 * 22 3 2 24 24 C 1.52995 * 109.47524 * 304.25350 * 22 3 2 25 25 H 1.09001 * 109.47439 * 299.47251 * 1 2 3 26 26 H 1.09005 * 109.46822 * 59.47401 * 1 2 3 27 27 H 1.08998 * 109.47032 * 179.47263 * 1 2 3 28 28 H 1.09000 * 109.47500 * 240.00265 * 2 1 3 29 29 H 1.09001 * 109.47198 * 119.99743 * 2 1 3 30 30 H 1.08998 * 109.47459 * 304.99915 * 5 3 2 31 31 H 1.09005 * 109.46925 * 184.99556 * 5 3 2 32 32 H 1.08995 * 109.61572 * 115.50094 * 9 8 6 33 33 H 1.09007 * 109.61050 * 354.98896 * 9 8 6 34 34 H 1.08999 * 109.61399 * 190.82737 * 10 9 8 35 35 H 1.09003 * 109.61359 * 70.31537 * 10 9 8 36 36 H 0.97002 * 120.00437 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.60774 * 64.26806 * 20 11 10 38 38 H 1.09004 * 109.60570 * 184.77622 * 20 11 10 39 39 H 1.09003 * 109.60802 * 244.49920 * 21 8 6 40 40 H 1.09004 * 109.60865 * 4.83786 * 21 8 6 41 41 H 1.09004 * 109.47309 * 64.25909 * 22 3 2 42 42 H 1.08995 * 109.47488 * 60.00367 * 23 22 3 43 43 H 1.09005 * 109.46770 * 180.02562 * 23 22 3 44 44 H 1.09004 * 109.47040 * 299.99861 * 23 22 3 45 45 H 1.08996 * 109.47596 * 186.18261 * 24 22 3 46 46 H 1.08997 * 109.47007 * 306.18748 * 24 22 3 47 47 H 1.09003 * 109.47204 * 66.18284 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1284 1.4430 -0.0578 5 6 1.5974 2.1399 1.2878 6 6 2.2622 1.4820 2.4695 7 8 3.0163 0.5476 2.2983 8 7 2.0198 1.9325 3.7163 9 6 2.6615 1.3011 4.8778 10 6 1.5705 0.8650 5.8636 11 7 0.6593 1.9964 6.0861 12 6 0.4122 2.4536 7.3530 13 1 1.1458 2.3083 8.1322 14 6 -0.7787 3.1090 7.6344 15 7 -0.7871 4.1323 8.4620 16 14 -2.3695 2.5383 6.8386 17 1 -3.0802 1.6149 7.7593 18 1 -3.2307 3.7144 6.5548 19 1 -2.0622 1.8320 5.5690 20 6 0.0132 2.6244 4.9249 21 6 1.1088 3.0642 3.9387 22 6 1.4647 2.1868 -1.2066 23 6 2.0572 3.5962 -1.2663 24 6 1.8183 1.4302 -2.4886 25 1 -0.3634 0.5056 0.8947 26 1 -0.3633 0.5220 -0.8853 27 1 -0.3633 -1.0276 -0.0095 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5150 2.0616 1.3900 31 1 1.8836 3.1910 1.2487 32 1 3.3272 2.0158 5.3616 33 1 3.2302 0.4298 4.5528 34 1 2.0274 0.5719 6.8089 35 1 1.0154 0.0247 5.4468 36 1 -1.6192 4.5906 8.6584 37 1 -0.6502 1.9064 4.4428 38 1 -0.5587 3.4935 5.2502 39 1 1.6641 3.9044 4.3557 40 1 0.6544 3.3593 2.9929 41 1 0.3809 2.2521 -1.1104 42 1 3.1410 3.5310 -1.3626 43 1 1.6471 4.1266 -2.1258 44 1 1.8053 4.1352 -0.3530 45 1 1.5050 2.0147 -3.3536 46 1 2.8955 1.2689 -2.5299 47 1 1.3064 0.4680 -2.4955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073100562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:28 Heat of formation + Delta-G solvation = -40.845249 kcal Electronic energy + Delta-G solvation = -23885.877634 eV Core-core repulsion = 20682.272336 eV Total energy + Delta-G solvation = -3203.605298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.34361 -39.22450 -38.07972 -35.60280 -33.63893 -33.26854 -32.37341 -30.90421 -28.80399 -27.71919 -26.28271 -24.98604 -24.66891 -23.21969 -22.15635 -20.23403 -19.57927 -18.72809 -17.87642 -17.12233 -16.75844 -16.62449 -16.01268 -15.97879 -15.72337 -15.28373 -14.92403 -14.84160 -14.68935 -14.18475 -14.04731 -13.82972 -13.62501 -13.43243 -13.19307 -13.01053 -12.76373 -12.73300 -12.51559 -12.39569 -12.24226 -12.15911 -12.07623 -11.87536 -11.67980 -11.42847 -11.30803 -11.15570 -11.11022 -10.66097 -10.52782 -9.81991 -8.88713 -8.24022 -5.38664 1.35385 1.47872 1.53855 1.69479 2.05702 2.44481 2.92572 3.38056 3.55208 3.81634 3.93289 4.07298 4.12406 4.19148 4.26009 4.35329 4.42516 4.44768 4.51942 4.56304 4.59178 4.64199 4.69293 4.73334 4.78719 4.85661 4.86779 4.88826 4.99860 5.04843 5.10029 5.14660 5.17946 5.20635 5.25410 5.36145 5.38351 5.51433 5.54524 5.62924 5.70343 5.84311 6.09766 6.53038 6.88977 7.24107 7.61847 8.04394 8.93884 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.004475 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.293719 B = 6255.643197 C = 6559.877411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.058 4.058 4 H 0.058 0.942 5 C -0.137 4.137 6 C 0.509 3.491 7 O -0.579 6.579 8 N -0.607 5.607 9 C 0.105 3.895 10 C 0.133 3.867 11 N -0.612 5.612 12 C -0.269 4.269 13 H 0.050 0.950 14 C -0.008 4.008 15 N -0.925 5.925 16 Si 0.897 3.103 17 H -0.305 1.305 18 H -0.291 1.291 19 H -0.237 1.237 20 C 0.126 3.874 21 C 0.097 3.903 22 C -0.089 4.089 23 C -0.152 4.152 24 C -0.146 4.146 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.264 0.736 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 -2.453 -21.980 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.077 4.077 4 H 0.077 0.923 5 C -0.176 4.176 6 C 0.300 3.700 7 O -0.460 6.460 8 N -0.340 5.340 9 C -0.020 4.020 10 C 0.008 3.992 11 N -0.336 5.336 12 C -0.398 4.398 13 H 0.068 0.932 14 C -0.206 4.206 15 N -0.567 5.567 16 Si 0.724 3.276 17 H -0.234 1.234 18 H -0.217 1.217 19 H -0.160 1.160 20 C 0.000 4.000 21 C -0.027 4.027 22 C -0.107 4.107 23 C -0.209 4.209 24 C -0.204 4.204 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.207 -2.814 -21.973 22.383 hybrid contribution -0.840 -0.244 0.809 1.192 sum 2.366 -3.058 -21.164 21.514 Atomic orbital electron populations 1.21877 0.95530 1.01523 1.02011 1.21622 0.96154 0.96550 1.01816 1.20898 0.99748 0.94555 0.92506 0.92302 1.21961 1.02308 1.01723 0.91622 1.21326 0.81184 0.83068 0.84448 1.90601 1.39326 1.30522 1.85551 1.48163 1.45837 1.33854 1.06108 1.21944 0.95353 0.98357 0.86322 1.21400 0.91123 0.88930 0.97782 1.44403 1.52449 1.34773 1.02002 1.18704 1.00100 1.32811 0.88173 0.93237 1.25649 1.00259 0.96648 0.98041 1.70202 1.27652 1.17977 1.40912 0.86614 0.82200 0.78557 0.80207 1.23386 1.21738 1.16047 1.21849 0.93999 0.96509 0.87668 1.22453 0.91501 0.87901 1.00855 1.21164 1.00790 0.94965 0.93810 1.21934 1.00758 0.95919 1.02274 1.21861 1.01308 1.00398 0.96785 0.93537 0.90871 0.93250 0.91573 0.93230 0.87507 0.86982 0.91949 0.89361 0.91061 0.95480 0.92717 0.94546 0.91909 0.91379 0.86580 0.90074 0.93200 0.91773 0.92158 0.91868 0.93280 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.13 71.98 0.66 -2.22 16 2 C -0.12 -2.72 4.93 30.60 0.15 -2.57 16 3 C -0.06 -1.16 1.40 -10.80 -0.02 -1.18 16 4 H 0.06 1.39 7.95 -2.39 -0.02 1.37 16 5 C -0.14 -2.89 3.21 29.85 0.10 -2.79 16 6 C 0.51 15.19 7.39 87.66 0.65 15.84 16 7 O -0.58 -20.66 13.38 -3.05 -0.04 -20.70 16 8 N -0.61 -19.29 2.95 -817.10 -2.41 -21.70 16 9 C 0.10 3.58 6.59 86.42 0.57 4.15 16 10 C 0.13 5.18 6.67 86.41 0.58 5.76 16 11 N -0.61 -27.67 2.72 -697.28 -1.90 -29.57 16 12 C -0.27 -14.65 9.85 84.04 0.83 -13.82 16 13 H 0.05 2.95 8.05 -2.91 -0.02 2.93 16 14 C -0.01 -0.43 4.80 84.86 0.41 -0.02 16 15 N -0.92 -55.16 13.97 21.65 0.30 -54.86 16 16 Si 0.90 42.37 26.44 68.60 1.81 44.18 16 17 H -0.31 -15.00 7.11 99.48 0.71 -14.29 16 18 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 19 H -0.24 -10.23 5.00 99.48 0.50 -9.74 16 20 C 0.13 4.87 4.58 86.57 0.40 5.27 16 21 C 0.10 2.93 6.52 86.57 0.56 3.49 16 22 C -0.09 -1.32 1.94 -10.80 -0.02 -1.34 16 23 C -0.15 -2.05 8.94 71.98 0.64 -1.41 16 24 C -0.15 -2.01 8.47 71.98 0.61 -1.40 16 25 H 0.05 0.94 6.43 -2.39 -0.02 0.93 16 26 H 0.07 1.11 6.12 -2.38 -0.01 1.09 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.33 6.69 -2.39 -0.02 1.31 16 29 H 0.05 1.43 5.90 -2.39 -0.01 1.41 16 30 H 0.11 2.03 5.87 -2.39 -0.01 2.02 16 31 H 0.11 1.94 6.08 -2.38 -0.01 1.93 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 2.97 6.99 -2.38 -0.02 2.95 16 34 H 0.07 2.75 7.92 -2.39 -0.02 2.73 16 35 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.04 1.39 6.80 -2.39 -0.02 1.38 16 38 H 0.06 2.63 5.54 -2.39 -0.01 2.61 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.12 2.54 5.91 -2.38 -0.01 2.53 16 41 H 0.08 1.11 6.61 -2.38 -0.02 1.09 16 42 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.06 0.78 6.44 -2.38 -0.02 0.77 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.06 0.80 6.46 -2.39 -0.02 0.78 16 Total: -1.00 -65.34 342.32 4.61 -60.73 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.73 Total: 14.15 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 6.11 Total: 7.77 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -4.00 Total: -106.13 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.04 Total: -20.70 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.81 Total: 44.18 kcal Total: -65.34 4.61 -60.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.887 kcal (2) G-P(sol) polarization free energy of solvation -65.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds