Wall clock time and date at job start Tue Mar 31 2020 05:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47362 * 2 1 4 4 H 1.09001 * 109.88211 * 56.10146 * 3 2 1 5 5 C 1.54321 * 109.88366 * 295.07046 * 3 2 1 6 6 C 1.55141 * 103.01964 * 218.31046 * 5 3 2 7 7 H 1.08998 * 110.99298 * 277.52872 * 6 5 3 8 8 C 1.52997 * 110.99073 * 153.74543 * 6 5 3 9 9 C 1.54905 * 101.65241 * 35.65417 * 6 5 3 10 10 N 1.47443 * 109.88754 * 177.30512 * 3 2 1 11 11 C 1.46896 * 111.00389 * 356.14432 * 10 3 2 12 12 C 1.50696 * 109.47381 * 176.98387 * 11 10 3 13 13 O 1.21276 * 119.99987 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99759 * 180.02562 * 12 11 10 15 15 C 1.46494 * 120.00475 * 359.97438 * 14 12 11 16 16 C 1.52998 * 109.47187 * 89.99772 * 15 14 12 17 17 C 1.46504 * 119.99599 * 180.02562 * 14 12 11 18 18 C 1.50697 * 109.47626 * 89.99794 * 17 14 12 19 19 H 1.08001 * 119.99437 * 359.97438 * 18 17 14 20 20 C 1.37870 * 120.00366 * 179.97438 * 18 17 14 21 21 N 1.31514 * 119.99801 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00208 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46864 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46976 * 120.00122 * 22 20 18 25 25 H 1.48491 * 109.47534 * 240.00532 * 22 20 18 26 26 H 1.09000 * 109.46868 * 65.02575 * 1 2 3 27 27 H 1.08995 * 109.47490 * 185.02751 * 1 2 3 28 28 H 1.08998 * 109.47061 * 305.02944 * 1 2 3 29 29 H 1.09000 * 109.47056 * 239.99190 * 2 1 3 30 30 H 1.09010 * 109.46960 * 119.99652 * 2 1 3 31 31 H 1.08998 * 110.70492 * 99.93034 * 5 3 2 32 32 H 1.08994 * 110.70844 * 336.69172 * 5 3 2 33 33 H 1.08999 * 109.47049 * 60.00487 * 8 6 5 34 34 H 1.08992 * 109.47265 * 299.99975 * 8 6 5 35 35 H 1.09006 * 109.46977 * 179.97438 * 8 6 5 36 36 H 1.09010 * 110.37355 * 81.75844 * 9 6 5 37 37 H 1.09003 * 110.38007 * 204.09695 * 9 6 5 38 38 H 1.09002 * 109.47110 * 296.99052 * 11 10 3 39 39 H 1.09002 * 109.46827 * 56.98031 * 11 10 3 40 40 H 1.08998 * 109.47369 * 210.00279 * 15 14 12 41 41 H 1.09003 * 109.47035 * 330.00436 * 15 14 12 42 42 H 1.08998 * 109.47380 * 300.00500 * 16 15 14 43 43 H 1.09005 * 109.47036 * 60.00647 * 16 15 14 44 44 H 1.09004 * 109.47346 * 180.02562 * 16 15 14 45 45 H 1.09004 * 109.46890 * 209.99794 * 17 14 12 46 46 H 1.08998 * 109.46752 * 329.99279 * 17 14 12 47 47 H 0.97001 * 119.99911 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6246 1.9825 0.8508 5 6 1.6353 2.1423 -1.3145 6 6 2.8768 3.0124 -1.6439 7 1 2.8548 3.9501 -1.0886 8 6 2.9808 3.2717 -3.1481 9 6 4.0333 2.1047 -1.1560 10 7 3.5130 1.4536 0.0652 11 6 4.0443 0.0910 0.2025 12 6 5.5506 0.1356 0.1913 13 8 6.1249 1.1978 0.0794 14 7 6.2593 -1.0052 0.3045 15 6 5.5656 -2.2884 0.4390 16 6 5.3171 -2.8818 -0.9491 17 6 7.7237 -0.9617 0.2942 18 6 8.2316 -0.8029 1.7041 19 1 7.5334 -0.7402 2.5256 20 6 9.5875 -0.7378 1.9452 21 7 10.4376 -0.8137 0.9447 22 14 10.2170 -0.5402 3.6928 23 1 9.0663 -0.4794 4.6295 24 1 11.0787 -1.6981 4.0424 25 1 11.0064 0.7133 3.7959 26 1 -0.3633 0.4339 -0.9316 27 1 -0.3634 -1.0236 0.0901 28 1 -0.3633 0.5899 0.8415 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.7556 2.7678 -1.1630 32 1 1.4579 1.4101 -2.1022 33 1 2.0872 3.7944 -3.4893 34 1 3.0698 2.3219 -3.6752 35 1 3.8593 3.8842 -3.3513 36 1 4.2735 1.3568 -1.9118 37 1 4.9130 2.7040 -0.9211 38 1 3.7005 -0.3400 1.1427 39 1 3.6927 -0.5214 -0.6279 40 1 6.1797 -2.9741 1.0228 41 1 4.6120 -2.1347 0.9444 42 1 4.7029 -2.1961 -1.5328 43 1 6.2706 -3.0356 -1.4545 44 1 4.8005 -3.8364 -0.8491 45 1 8.1117 -1.8881 -0.1296 46 1 8.0578 -0.1180 -0.3096 47 1 11.3916 -0.7674 1.1142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075021920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:27 Heat of formation + Delta-G solvation = -37.884985 kcal Electronic energy + Delta-G solvation = -23760.964102 eV Core-core repulsion = 20557.487170 eV Total energy + Delta-G solvation = -3203.476931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.12453 -38.35823 -35.24070 -34.10920 -32.93404 -32.50270 -30.07093 -28.96936 -27.67347 -26.54055 -25.07795 -23.11963 -22.96692 -22.35708 -20.32906 -19.67319 -18.01564 -16.79781 -16.37891 -15.71348 -15.69211 -15.02600 -14.84760 -14.63822 -14.13024 -13.82896 -13.38217 -13.23762 -13.05187 -12.97753 -12.80111 -12.53808 -12.14414 -12.10515 -11.89627 -11.87030 -11.57065 -11.43066 -11.26972 -11.15239 -11.02510 -10.85145 -10.71209 -10.57659 -10.51094 -10.47318 -10.37679 -10.07321 -9.55795 -8.73248 -8.40002 -8.00047 -7.58347 -6.00545 -4.04700 3.32607 3.40050 3.43705 3.52000 3.79316 4.24148 4.48787 4.58400 4.61594 4.73347 5.03418 5.04689 5.12997 5.21590 5.29528 5.34263 5.37439 5.43005 5.47811 5.51122 5.61541 5.62849 5.67762 5.71650 5.76819 5.81383 5.84105 5.86712 5.92558 6.01404 6.04262 6.11274 6.23157 6.24188 6.38354 6.48058 6.53392 7.03001 7.19804 7.25283 7.49425 7.62327 7.96874 8.28547 8.49751 8.96161 9.19740 9.60611 11.07550 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.004430 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.430876 B = 6319.551543 C = 6739.780900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.072 3.928 4 H 0.085 0.915 5 C -0.131 4.131 6 C -0.108 4.108 7 H 0.082 0.918 8 C -0.139 4.139 9 C 0.058 3.942 10 N -0.508 5.508 11 C 0.030 3.970 12 C 0.504 3.496 13 O -0.527 6.527 14 N -0.600 5.600 15 C 0.107 3.893 16 C -0.168 4.168 17 C 0.248 3.752 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.030 0.970 46 H 0.042 0.958 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.837 0.082 -5.796 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C -0.036 4.036 4 H 0.103 0.897 5 C -0.170 4.170 6 C -0.127 4.127 7 H 0.100 0.900 8 C -0.197 4.197 9 C -0.069 4.069 10 N -0.232 5.232 11 C -0.101 4.101 12 C 0.290 3.710 13 O -0.403 6.403 14 N -0.333 5.333 15 C -0.017 4.017 16 C -0.227 4.227 17 C 0.129 3.871 18 C -0.562 4.562 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.048 0.952 46 H 0.060 0.940 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.131 0.917 -5.448 19.912 hybrid contribution 0.192 -0.592 0.317 0.699 sum -18.939 0.325 -5.131 19.624 Atomic orbital electron populations 1.21734 0.95493 1.01550 1.01825 1.22171 0.96386 0.97263 1.02388 1.22555 0.87951 0.95240 0.97896 0.89715 1.22931 0.98123 0.98787 0.97132 1.22374 0.94974 0.99043 0.96304 0.89981 1.21687 1.01614 1.01557 0.94857 1.23156 0.97881 0.96637 0.89269 1.63529 1.04678 1.16313 1.38675 1.22373 0.94090 0.91296 1.02308 1.20222 0.88618 0.84404 0.77786 1.90638 1.71725 1.28974 1.48963 1.48243 1.09251 1.04755 1.71010 1.21385 0.97082 0.86832 0.96426 1.22221 1.02058 1.00160 0.98232 1.19235 0.72301 0.98050 0.97551 1.21488 0.91720 1.49987 0.92979 0.92429 1.24928 0.96716 0.95159 0.97321 1.69945 1.02322 1.50640 1.30634 0.86454 0.78788 0.77658 0.84597 1.19790 1.21039 1.20897 0.92765 0.92810 0.92592 0.91831 0.91051 0.91160 0.91507 0.92770 0.92860 0.92307 0.94322 0.88301 0.88512 0.92308 0.89961 0.91943 0.93365 0.92027 0.92217 0.95179 0.94003 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.65 37.16 0.36 -0.82 16 2 C -0.14 -1.43 4.04 -26.73 -0.11 -1.53 16 3 C 0.07 0.84 3.48 -66.72 -0.23 0.61 16 4 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 5 C -0.13 -1.35 5.05 -24.91 -0.13 -1.48 16 6 C -0.11 -1.28 3.63 -88.48 -0.32 -1.60 16 7 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 8 C -0.14 -1.43 9.31 37.16 0.35 -1.08 16 9 C 0.06 0.90 4.67 -2.30 -0.01 0.89 16 10 N -0.51 -7.92 5.10 -224.78 -1.15 -9.07 16 11 C 0.03 0.48 2.76 -4.98 -0.01 0.47 16 12 C 0.50 10.69 7.34 -10.99 -0.08 10.60 16 13 O -0.53 -13.38 13.63 5.56 0.08 -13.30 16 14 N -0.60 -12.81 2.46 -175.06 -0.43 -13.24 16 15 C 0.11 1.73 5.93 -4.05 -0.02 1.71 16 16 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 17 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 18 C -0.52 -15.05 9.39 -34.44 -0.32 -15.38 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 22 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H 0.05 0.41 7.54 -51.93 -0.39 0.02 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.65 6.78 -51.93 -0.35 0.29 16 30 H 0.07 0.73 6.49 -51.92 -0.34 0.39 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.54 8.07 -51.93 -0.42 0.13 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.62 7.58 -51.92 -0.39 0.23 16 37 H 0.10 1.86 6.85 -51.93 -0.36 1.51 16 38 H 0.10 1.41 6.11 -51.93 -0.32 1.09 16 39 H 0.06 0.82 5.44 -51.93 -0.28 0.54 16 40 H 0.08 1.38 8.07 -51.93 -0.42 0.97 16 41 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 42 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 46 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -32.66 360.62 -9.16 -41.82 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.53 Total: -1.32 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.28 Total: -1.33 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.84 Total: -48.51 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.66 -9.16 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075021920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.931 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds