Wall clock time and date at job start Tue Mar 31 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47304 * 2 1 4 4 H 1.09000 * 110.36960 * 56.84750 * 3 2 1 5 5 C 1.54381 * 110.41050 * 294.49752 * 3 2 1 6 6 C 1.54262 * 105.06256 * 217.25213 * 5 3 2 7 7 H 1.08994 * 110.33083 * 118.89608 * 6 5 3 8 8 C 1.52998 * 110.32403 * 241.00449 * 6 5 3 9 9 C 1.54382 * 105.05923 * 359.97438 * 6 5 3 10 10 N 1.48566 * 110.41321 * 179.19961 * 3 2 1 11 11 C 1.46894 * 110.99691 * 277.93597 * 10 3 2 12 12 C 1.50703 * 109.47128 * 164.29134 * 11 10 3 13 13 O 1.21281 * 119.99704 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00214 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99891 * 0.02562 * 14 12 11 16 16 C 1.53000 * 109.47177 * 89.99701 * 15 14 12 17 17 C 1.46500 * 120.00261 * 180.02562 * 14 12 11 18 18 C 1.50696 * 109.47342 * 89.99982 * 17 14 12 19 19 H 1.08000 * 119.99879 * 359.97438 * 18 17 14 20 20 C 1.37873 * 120.00186 * 180.02562 * 18 17 14 21 21 N 1.31521 * 119.99555 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00511 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46859 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47159 * 119.99320 * 22 20 18 25 25 H 1.48494 * 109.47569 * 239.99959 * 22 20 18 26 26 H 1.08996 * 109.47141 * 185.40658 * 1 2 3 27 27 H 1.08996 * 109.47118 * 305.40660 * 1 2 3 28 28 H 1.09004 * 109.46984 * 65.40596 * 1 2 3 29 29 H 1.09003 * 109.46902 * 239.99957 * 2 1 3 30 30 H 1.09004 * 109.47318 * 120.00245 * 2 1 3 31 31 H 1.09000 * 110.32543 * 336.14645 * 5 3 2 32 32 H 1.08994 * 110.32493 * 98.35647 * 5 3 2 33 33 H 1.09007 * 109.47326 * 59.99686 * 8 6 5 34 34 H 1.09000 * 109.47386 * 179.97438 * 8 6 5 35 35 H 1.08997 * 109.46991 * 299.99791 * 8 6 5 36 36 H 1.09000 * 110.41419 * 142.62961 * 9 6 5 37 37 H 1.08997 * 110.41317 * 265.08026 * 9 6 5 38 38 H 1.08998 * 109.47286 * 284.29698 * 11 10 3 39 39 H 1.09007 * 109.47482 * 44.29518 * 11 10 3 40 40 H 1.09002 * 109.47489 * 209.99700 * 15 14 12 41 41 H 1.09001 * 109.47531 * 329.99696 * 15 14 12 42 42 H 1.09003 * 109.47601 * 179.97438 * 16 15 14 43 43 H 1.08992 * 109.47551 * 299.99902 * 16 15 14 44 44 H 1.09003 * 109.46800 * 60.00379 * 16 15 14 45 45 H 1.08996 * 109.47081 * 210.00541 * 17 14 12 46 46 H 1.09001 * 109.46531 * 330.00036 * 17 14 12 47 47 H 0.97003 * 119.99635 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6397 1.9864 0.8555 5 6 1.6539 2.1500 -1.3166 6 6 2.8593 3.0508 -1.6561 7 1 3.2914 2.7602 -2.6136 8 6 2.4321 4.5195 -1.6909 9 6 3.8721 2.8121 -0.5157 10 7 3.5254 1.4669 0.0194 11 6 4.0368 1.2925 1.3854 12 6 5.5006 0.9381 1.3323 13 8 6.0625 0.8408 0.2619 14 7 6.1855 0.7302 2.4743 15 6 5.5069 0.8483 3.7672 16 6 4.9302 -0.5114 4.1665 17 6 7.6087 0.3862 2.4227 18 6 8.4320 1.6480 2.4550 19 1 7.9440 2.6100 2.5082 20 6 9.8082 1.5744 2.4157 21 7 10.4024 0.4028 2.3504 22 14 10.8288 3.1384 2.4550 23 1 9.9272 4.3160 2.5293 24 1 11.7171 3.1200 3.6449 25 1 11.6534 3.2226 1.2229 26 1 -0.3633 -1.0231 0.0968 27 1 -0.3633 0.5954 0.8376 28 1 -0.3633 0.4277 -0.9345 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.4943 1.4172 -2.1076 32 1 0.7583 2.7544 -1.1731 33 1 2.0372 4.8062 -0.7162 34 1 3.2933 5.1429 -1.9312 35 1 1.6615 4.6558 -2.4495 36 1 4.8903 2.8147 -0.9048 37 1 3.7582 3.5706 0.2588 38 1 3.9075 2.2201 1.9430 39 1 3.4869 0.4917 1.8799 40 1 6.2201 1.1766 4.5233 41 1 4.6997 1.5765 3.6888 42 1 4.4256 -0.4238 5.1288 43 1 4.2170 -0.8398 3.4106 44 1 5.7375 -1.2396 4.2451 45 1 7.8634 -0.2360 3.2806 46 1 7.8172 -0.1602 1.5029 47 1 11.3706 0.3510 2.3230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075021922.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:33 Heat of formation + Delta-G solvation = -45.057088 kcal Electronic energy + Delta-G solvation = -23503.871235 eV Core-core repulsion = 20300.083298 eV Total energy + Delta-G solvation = -3203.787937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.76707 -38.38121 -35.15708 -33.91960 -33.20835 -32.62663 -30.03989 -28.78584 -27.68770 -26.48283 -25.14353 -23.15738 -22.92862 -22.06107 -20.51417 -19.63249 -18.22175 -16.54829 -16.26128 -15.98808 -15.54811 -15.04522 -14.95443 -14.39093 -14.00997 -13.66779 -13.55716 -13.27975 -13.23871 -13.07158 -12.59952 -12.40751 -12.36137 -12.07547 -11.92037 -11.69341 -11.58611 -11.49219 -11.18096 -11.05484 -10.90219 -10.85222 -10.71268 -10.65299 -10.49412 -10.43670 -10.38468 -10.08352 -9.56524 -8.84995 -8.40145 -8.18206 -7.56412 -6.00567 -4.04961 3.31339 3.38714 3.42190 3.56554 3.72766 4.26520 4.47825 4.55239 4.67161 4.91567 4.97921 5.12665 5.20872 5.26631 5.28751 5.32905 5.33963 5.37162 5.49602 5.52619 5.58638 5.61757 5.65749 5.69526 5.76332 5.83310 5.85459 5.93314 5.97081 6.04729 6.06057 6.12284 6.25788 6.26664 6.29804 6.38222 6.51412 7.00751 7.02163 7.22631 7.52176 7.64252 7.97077 8.28961 8.53466 8.96211 9.24597 9.60343 11.07441 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.004590 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.672892 B = 6098.399679 C = 7133.097258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.061 3.939 4 H 0.048 0.952 5 C -0.112 4.112 6 C -0.098 4.098 7 H 0.080 0.920 8 C -0.143 4.143 9 C 0.040 3.960 10 N -0.485 5.485 11 C 0.026 3.974 12 C 0.508 3.492 13 O -0.521 6.521 14 N -0.602 5.602 15 C 0.108 3.892 16 C -0.169 4.169 17 C 0.248 3.752 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.030 0.970 46 H 0.043 0.957 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.513 2.828 -1.433 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.048 4.048 4 H 0.066 0.934 5 C -0.150 4.150 6 C -0.117 4.117 7 H 0.098 0.902 8 C -0.201 4.201 9 C -0.087 4.087 10 N -0.209 5.209 11 C -0.106 4.106 12 C 0.293 3.707 13 O -0.397 6.397 14 N -0.336 5.336 15 C -0.017 4.017 16 C -0.227 4.227 17 C 0.129 3.871 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.760 2.249 -2.324 20.023 hybrid contribution 0.386 1.467 0.813 1.721 sum -19.374 3.716 -1.511 19.785 Atomic orbital electron populations 1.21760 0.95817 1.01501 1.01637 1.21461 0.94890 0.95573 1.02897 1.22717 0.88547 0.96302 0.97224 0.93423 1.22416 0.97346 0.98250 0.96957 1.21884 0.95441 0.94876 0.99520 0.90194 1.21857 1.01157 0.95599 1.01440 1.23297 1.00657 0.88704 0.96060 1.65147 1.07241 1.29373 1.19098 1.22263 0.95804 1.01583 0.90917 1.20099 0.87627 0.78452 0.84498 1.90658 1.70031 1.50241 1.28743 1.48255 1.12441 1.68709 1.04150 1.21375 0.96863 0.96193 0.87265 1.22224 1.01175 0.98787 1.00539 1.19227 0.73408 0.96171 0.98338 1.21479 0.91160 0.93038 1.50525 0.92568 1.24933 0.97764 0.96255 0.95185 1.69951 1.09648 1.23231 1.50583 0.86465 0.80134 0.83371 0.77575 1.19884 1.21011 1.20888 0.92712 0.93023 0.92673 0.90956 0.92116 0.90979 0.91514 0.92911 0.92469 0.92636 0.89045 0.94167 0.92429 0.88843 0.90061 0.92134 0.92301 0.93137 0.91999 0.95169 0.93936 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.66 37.16 0.36 -0.88 16 2 C -0.11 -1.19 5.55 -26.73 -0.15 -1.34 16 3 C 0.06 0.71 2.29 -66.07 -0.15 0.56 16 4 H 0.05 0.53 8.00 -51.93 -0.42 0.12 16 5 C -0.11 -1.17 5.38 -25.35 -0.14 -1.31 16 6 C -0.10 -1.15 3.65 -89.24 -0.33 -1.48 16 7 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 8 C -0.14 -1.38 8.92 37.16 0.33 -1.05 16 9 C 0.04 0.61 5.64 -2.00 -0.01 0.60 16 10 N -0.49 -7.54 4.57 -223.29 -1.02 -8.56 16 11 C 0.03 0.42 3.86 -4.98 -0.02 0.40 16 12 C 0.51 10.92 7.59 -10.98 -0.08 10.84 16 13 O -0.52 -13.61 15.31 5.56 0.09 -13.52 16 14 N -0.60 -12.99 2.46 -175.06 -0.43 -13.42 16 15 C 0.11 1.76 5.93 -4.04 -0.02 1.73 16 16 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 17 C 0.25 6.60 5.16 -5.20 -0.03 6.57 16 18 C -0.52 -15.04 9.39 -34.44 -0.32 -15.37 16 19 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 22 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.43 7.62 -51.93 -0.40 0.03 16 29 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.06 0.68 7.24 -51.93 -0.38 0.31 16 31 H 0.07 0.74 7.81 -51.93 -0.41 0.34 16 32 H 0.07 0.59 7.71 -51.93 -0.40 0.19 16 33 H 0.05 0.49 8.10 -51.92 -0.42 0.07 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 1.65 7.67 -51.93 -0.40 1.26 16 37 H 0.04 0.57 7.38 -51.93 -0.38 0.19 16 38 H 0.06 0.84 6.91 -51.93 -0.36 0.48 16 39 H 0.09 1.30 6.10 -51.93 -0.32 0.99 16 40 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 41 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 46 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -33.05 368.15 -9.10 -42.16 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -8.73 Total: -2.08 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.28 Total: -1.01 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.71 Total: -48.20 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.05 -9.10 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075021922.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.900 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds