Wall clock time and date at job start Tue Mar 31 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47256 * 2 1 4 4 H 1.08996 * 110.00953 * 303.02909 * 3 2 1 5 5 C 1.54318 * 109.88723 * 64.14493 * 3 2 1 6 6 C 1.55144 * 103.01667 * 141.69190 * 5 3 2 7 7 H 1.08998 * 110.99413 * 82.43802 * 6 5 3 8 8 C 1.52999 * 110.98656 * 206.21380 * 6 5 3 9 9 C 1.54909 * 101.65221 * 324.33969 * 6 5 3 10 10 N 1.47448 * 109.88538 * 181.91332 * 3 2 1 11 11 C 1.46891 * 111.00390 * 3.85158 * 10 3 2 12 12 C 1.50703 * 109.47208 * 172.07124 * 11 10 3 13 13 O 1.21275 * 119.99708 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99849 * 179.97438 * 12 11 10 15 15 C 1.46502 * 119.99989 * 359.97438 * 14 12 11 16 16 C 1.52999 * 109.47063 * 269.99884 * 15 14 12 17 17 C 1.46496 * 119.99933 * 180.02562 * 14 12 11 18 18 C 1.50694 * 109.47390 * 269.99795 * 17 14 12 19 19 H 1.08006 * 119.99418 * 0.02562 * 18 17 14 20 20 C 1.37877 * 120.00410 * 179.97438 * 18 17 14 21 21 N 1.31515 * 119.99965 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99970 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47590 * 60.00188 * 22 20 18 24 24 H 1.48509 * 109.46978 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47397 * 299.99733 * 22 20 18 26 26 H 1.08998 * 109.46911 * 54.54516 * 1 2 3 27 27 H 1.09001 * 109.47362 * 174.54464 * 1 2 3 28 28 H 1.08995 * 109.47512 * 294.54733 * 1 2 3 29 29 H 1.09002 * 109.47039 * 239.99884 * 2 1 3 30 30 H 1.09007 * 109.46803 * 120.00023 * 2 1 3 31 31 H 1.09001 * 110.70224 * 260.06501 * 5 3 2 32 32 H 1.08995 * 110.70695 * 23.30808 * 5 3 2 33 33 H 1.09003 * 109.47150 * 60.00229 * 8 6 5 34 34 H 1.09002 * 109.47146 * 179.97438 * 8 6 5 35 35 H 1.09001 * 109.47270 * 299.99699 * 8 6 5 36 36 H 1.08992 * 110.37778 * 278.24647 * 9 6 5 37 37 H 1.09005 * 110.36881 * 155.89784 * 9 6 5 38 38 H 1.09004 * 109.47321 * 52.06931 * 11 10 3 39 39 H 1.09004 * 109.47026 * 292.07490 * 11 10 3 40 40 H 1.08995 * 109.47208 * 29.99909 * 15 14 12 41 41 H 1.09004 * 109.46938 * 150.00396 * 15 14 12 42 42 H 1.08999 * 109.47611 * 300.00125 * 16 15 14 43 43 H 1.08996 * 109.47024 * 60.00711 * 16 15 14 44 44 H 1.09008 * 109.47160 * 180.02562 * 16 15 14 45 45 H 1.09006 * 109.47336 * 149.99540 * 17 14 12 46 46 H 1.09004 * 109.47165 * 30.00128 * 17 14 12 47 47 H 0.97000 * 120.00030 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6380 1.9802 -0.8587 5 6 1.6183 2.1483 1.3059 6 6 2.8555 3.0200 1.6471 7 1 2.8411 3.9549 1.0869 8 6 2.9396 3.2871 3.1513 9 6 4.0183 2.1100 1.1785 10 7 3.5137 1.4533 -0.0463 11 6 4.0466 0.0902 -0.1704 12 6 5.5333 0.1518 -0.4098 13 8 6.0936 1.2257 -0.4706 14 7 6.2401 -0.9864 -0.5554 15 6 5.5634 -2.2836 -0.4804 16 6 5.5593 -2.7735 0.9690 17 6 7.6853 -0.9265 -0.7876 18 6 7.9541 -0.8675 -2.2692 19 1 7.1306 -0.8736 -2.9680 20 6 9.2512 -0.8047 -2.7327 21 7 10.2539 -0.7968 -1.8817 22 14 9.5842 -0.7309 -4.5692 23 1 8.9401 0.4788 -5.1410 24 1 11.0492 -0.6703 -4.8046 25 1 9.0282 -1.9433 -5.2223 26 1 -0.3633 0.5961 -0.8371 27 1 -0.3634 -1.0230 -0.0977 28 1 -0.3634 0.4269 0.9347 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.7407 2.7732 1.1401 32 1 1.4308 1.4198 2.0946 33 1 3.0215 2.3400 3.6845 34 1 3.8159 3.8998 3.3631 35 1 2.0417 3.8116 3.4779 36 1 4.2486 1.3657 1.9407 37 1 4.9008 2.7084 0.9521 38 1 3.5643 -0.4137 -1.0081 39 1 3.8491 -0.4622 0.7483 40 1 4.5369 -2.1787 -0.8314 41 1 6.0896 -3.0046 -1.1061 42 1 6.5858 -2.8784 1.3201 43 1 5.0331 -2.0526 1.5947 44 1 5.0561 -3.7390 1.0248 45 1 8.1580 -1.8144 -0.3676 46 1 8.0937 -0.0366 -0.3085 47 1 11.1663 -0.7523 -2.2077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075021923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:37 Heat of formation + Delta-G solvation = -37.838275 kcal Electronic energy + Delta-G solvation = -23699.368461 eV Core-core repulsion = 20495.893555 eV Total energy + Delta-G solvation = -3203.474906 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.08527 -38.37189 -35.18671 -34.13667 -32.94447 -32.51679 -30.05306 -28.98782 -27.67578 -26.56536 -25.08459 -23.13973 -22.95366 -22.34636 -20.35972 -19.67590 -17.99797 -16.80812 -16.34757 -15.71982 -15.67036 -15.12491 -14.84517 -14.60797 -14.13246 -13.87761 -13.36726 -13.25719 -13.08669 -12.99416 -12.76548 -12.51607 -12.16852 -12.14076 -11.90764 -11.79985 -11.57407 -11.46205 -11.27589 -11.12941 -11.01865 -10.87304 -10.71041 -10.58057 -10.55326 -10.47409 -10.36341 -10.06996 -9.58071 -8.76032 -8.38038 -8.00715 -7.56452 -5.99025 -4.03296 3.35631 3.39832 3.42865 3.55112 3.77912 4.24908 4.49755 4.56021 4.57925 4.71631 5.01169 5.04184 5.12872 5.21739 5.28753 5.34177 5.35954 5.42987 5.44775 5.48059 5.59054 5.60187 5.67836 5.69687 5.72656 5.81329 5.82052 5.86621 5.89024 5.98333 6.04604 6.09050 6.19811 6.25300 6.35083 6.42712 6.49073 7.02967 7.17770 7.25064 7.51069 7.64110 7.98278 8.30158 8.52565 8.97245 9.23342 9.61838 11.08989 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.004338 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.722598 B = 6453.184732 C = 6735.346626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.072 3.928 4 H 0.085 0.915 5 C -0.131 4.131 6 C -0.106 4.106 7 H 0.083 0.917 8 C -0.140 4.140 9 C 0.055 3.945 10 N -0.506 5.506 11 C 0.030 3.970 12 C 0.504 3.496 13 O -0.524 6.524 14 N -0.601 5.601 15 C 0.108 3.892 16 C -0.168 4.168 17 C 0.249 3.751 18 C -0.524 4.524 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.039 0.961 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.058 0.942 45 H 0.030 0.970 46 H 0.042 0.958 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.263 0.150 8.531 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C -0.036 4.036 4 H 0.103 0.897 5 C -0.169 4.169 6 C -0.125 4.125 7 H 0.101 0.899 8 C -0.197 4.197 9 C -0.072 4.072 10 N -0.230 5.230 11 C -0.101 4.101 12 C 0.290 3.710 13 O -0.400 6.400 14 N -0.334 5.334 15 C -0.017 4.017 16 C -0.227 4.227 17 C 0.129 3.871 18 C -0.563 4.563 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.536 5.536 22 Si 0.725 3.275 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.060 0.940 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.546 1.001 8.057 20.246 hybrid contribution 0.011 -0.647 -0.377 0.749 sum -18.535 0.353 7.681 20.067 Atomic orbital electron populations 1.21736 0.95479 1.01577 1.01828 1.22199 0.96427 0.97215 1.02419 1.22558 0.87800 0.95250 0.98019 0.89671 1.22931 0.98089 0.98731 0.97177 1.22337 0.94826 0.98999 0.96318 0.89887 1.21695 1.01676 1.01553 0.94822 1.23139 0.98139 0.96598 0.89364 1.63424 1.04969 1.16303 1.38262 1.22384 0.94755 0.91173 1.01782 1.20221 0.88217 0.84545 0.78009 1.90646 1.71359 1.28308 1.49705 1.48248 1.10987 1.04119 1.70088 1.21375 0.97118 0.86901 0.96289 1.22222 1.02498 1.00334 0.97624 1.19215 0.73193 0.98135 0.96511 1.21416 0.92134 1.50709 0.92025 0.92557 1.24925 0.95999 0.95135 0.98020 1.69925 0.98991 1.50570 1.34076 0.86574 0.76984 0.78641 0.85309 1.20164 1.21229 1.20304 0.92570 0.92796 0.92767 0.90959 0.91835 0.91094 0.91460 0.92845 0.92325 0.92682 0.94245 0.88877 0.88266 0.92574 0.92019 0.89998 0.92026 0.93353 0.92256 0.95211 0.94033 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.64 37.16 0.36 -0.83 16 2 C -0.14 -1.43 4.08 -26.73 -0.11 -1.54 16 3 C 0.07 0.84 3.49 -66.72 -0.23 0.61 16 4 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 5 C -0.13 -1.31 5.03 -24.91 -0.13 -1.44 16 6 C -0.11 -1.21 3.63 -88.48 -0.32 -1.53 16 7 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 8 C -0.14 -1.35 9.31 37.16 0.35 -1.00 16 9 C 0.05 0.83 5.13 -2.30 -0.01 0.82 16 10 N -0.51 -7.88 4.90 -224.78 -1.10 -8.98 16 11 C 0.03 0.48 2.73 -4.98 -0.01 0.46 16 12 C 0.50 10.79 7.45 -10.98 -0.08 10.71 16 13 O -0.52 -13.55 14.45 5.56 0.08 -13.47 16 14 N -0.60 -12.92 2.46 -175.06 -0.43 -13.35 16 15 C 0.11 1.75 5.93 -4.04 -0.02 1.72 16 16 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 17 C 0.25 6.61 5.16 -5.20 -0.03 6.58 16 18 C -0.52 -15.14 9.38 -34.44 -0.32 -15.46 16 19 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 22 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.40 7.51 -51.93 -0.39 0.01 16 29 H 0.07 0.75 6.25 -51.93 -0.32 0.43 16 30 H 0.06 0.63 7.01 -51.93 -0.36 0.27 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.64 7.65 -51.93 -0.40 0.24 16 33 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.04 0.59 7.50 -51.93 -0.39 0.20 16 37 H 0.09 1.68 7.28 -51.93 -0.38 1.30 16 38 H 0.10 1.44 5.40 -51.93 -0.28 1.16 16 39 H 0.06 0.78 5.88 -51.93 -0.31 0.48 16 40 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 41 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 44 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 45 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 46 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -33.03 361.80 -9.10 -42.12 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -8.53 Total: -1.60 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.28 Total: -1.12 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.80 Total: -48.63 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.03 -9.10 -42.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075021923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.286 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds