Wall clock time and date at job start Tue Mar 31 2020 05:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46686 * 2 1 4 4 H 1.08996 * 109.45657 * 56.05367 * 3 2 1 5 5 C 1.53041 * 109.46115 * 296.08246 * 3 2 1 6 6 C 1.53122 * 109.27812 * 180.81010 * 5 3 2 7 7 C 1.53117 * 109.16142 * 57.64944 * 6 5 3 8 8 C 1.53034 * 109.28089 * 302.34736 * 7 6 5 9 9 N 1.46844 * 109.52157 * 59.18072 * 8 7 6 10 10 C 1.46899 * 111.00036 * 174.16069 * 9 8 7 11 11 C 1.50697 * 109.47450 * 65.35995 * 10 9 8 12 12 O 1.21283 * 119.99602 * 354.37132 * 11 10 9 13 13 N 1.34776 * 120.00247 * 174.36691 * 11 10 9 14 14 C 1.46496 * 120.00067 * 4.55216 * 13 11 10 15 15 C 1.52993 * 109.47347 * 271.46349 * 14 13 11 16 16 C 1.46506 * 119.99904 * 184.55683 * 13 11 10 17 17 C 1.50692 * 109.47010 * 269.99959 * 16 13 11 18 18 H 1.08006 * 120.00310 * 0.02562 * 17 16 13 19 19 C 1.37881 * 120.00281 * 180.02562 * 17 16 13 20 20 N 1.31515 * 119.99501 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00430 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47353 * 89.99569 * 21 19 17 23 23 H 1.48499 * 109.47001 * 210.00154 * 21 19 17 24 24 H 1.48503 * 109.46763 * 329.99703 * 21 19 17 25 25 H 1.08998 * 109.47411 * 305.84409 * 1 2 3 26 26 H 1.08997 * 109.47131 * 65.84702 * 1 2 3 27 27 H 1.09004 * 109.46894 * 185.83999 * 1 2 3 28 28 H 1.08999 * 109.47471 * 240.00081 * 2 1 3 29 29 H 1.08995 * 109.46749 * 119.99295 * 2 1 3 30 30 H 1.08992 * 109.50719 * 60.86353 * 5 3 2 31 31 H 1.09000 * 109.50139 * 300.74453 * 5 3 2 32 32 H 1.09002 * 109.52089 * 297.74888 * 6 5 3 33 33 H 1.08997 * 109.52465 * 177.56182 * 6 5 3 34 34 H 1.09001 * 109.50375 * 182.40339 * 7 6 5 35 35 H 1.08998 * 109.50103 * 62.29356 * 7 6 5 36 36 H 1.08994 * 109.46700 * 299.16187 * 8 7 6 37 37 H 1.09003 * 109.46099 * 179.19226 * 8 7 6 38 38 H 1.09004 * 109.46952 * 305.36042 * 10 9 8 39 39 H 1.09001 * 109.47624 * 185.36092 * 10 9 8 40 40 H 1.09001 * 109.46862 * 151.45948 * 14 13 11 41 41 H 1.09006 * 109.47067 * 31.46813 * 14 13 11 42 42 H 1.08999 * 109.46850 * 294.78279 * 15 14 13 43 43 H 1.08999 * 109.47414 * 54.78997 * 15 14 13 44 44 H 1.09007 * 109.46750 * 174.78968 * 15 14 13 45 45 H 1.08999 * 109.47098 * 29.99775 * 16 13 11 46 46 H 1.08996 * 109.47101 * 149.99634 * 16 13 11 47 47 H 0.97001 * 119.99601 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6199 1.9761 0.8526 5 6 1.6117 2.1347 -1.2960 6 6 2.1413 3.5715 -1.3007 7 6 3.6649 3.5460 -1.1510 8 6 4.0336 2.8130 0.1408 9 7 3.5053 1.4436 0.0958 10 6 3.9573 0.6665 1.2576 11 6 3.3675 1.2526 2.5144 12 8 2.7262 2.2806 2.4610 13 7 3.5526 0.6345 3.6976 14 6 4.4093 -0.5511 3.7786 15 6 3.5732 -1.8038 3.5091 16 6 2.8971 1.1482 4.9029 17 6 3.7964 2.1542 5.5738 18 1 4.7598 2.3879 5.1451 19 6 3.3894 2.7763 6.7350 20 7 2.2161 2.4921 7.2568 21 14 4.5039 4.0239 7.5663 22 1 4.2146 5.3792 7.0327 23 1 4.2606 4.0063 9.0312 24 1 5.9225 3.6778 7.2960 25 1 -0.3634 0.6018 0.8330 26 1 -0.3633 0.4205 -0.9377 27 1 -0.3633 -1.0224 0.1046 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.5237 2.1477 -1.3594 31 1 2.0201 1.5937 -2.1496 32 1 1.7029 4.1239 -0.4696 33 1 1.8756 4.0546 -2.2409 34 1 4.0437 4.5672 -1.1107 35 1 4.1055 3.0272 -2.0023 36 1 3.6042 3.3400 0.9927 37 1 5.1183 2.7805 0.2431 38 1 5.0452 0.7006 1.3165 39 1 3.6316 -0.3683 1.1517 40 1 4.8486 -0.6147 4.7741 41 1 5.2032 -0.4772 3.0352 42 1 2.8385 -1.9282 4.3046 43 1 3.0599 -1.6994 2.5533 44 1 4.2259 -2.6763 3.4777 45 1 1.9569 1.6270 4.6291 46 1 2.6990 0.3240 5.5881 47 1 1.9297 2.9301 8.0735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076425651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:11 Heat of formation + Delta-G solvation = -44.940463 kcal Electronic energy + Delta-G solvation = -24314.437554 eV Core-core repulsion = 21110.654674 eV Total energy + Delta-G solvation = -3203.782880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.15116 -37.96592 -35.28994 -33.83880 -33.29228 -32.67252 -30.10080 -29.04240 -28.11406 -26.19777 -24.16775 -23.28125 -22.94278 -21.99122 -20.61496 -19.58185 -18.23774 -16.55758 -16.23964 -16.06163 -15.25056 -15.06516 -14.84710 -14.22914 -14.17183 -14.01424 -13.54049 -13.26106 -13.19293 -12.94022 -12.62347 -12.34272 -12.28484 -11.97427 -11.64193 -11.62326 -11.45644 -11.30181 -11.18987 -10.93309 -10.90893 -10.69980 -10.55627 -10.51180 -10.38157 -10.13048 -10.08046 -9.85038 -9.63473 -9.51815 -8.44258 -7.67244 -7.60590 -6.05043 -4.09471 3.29992 3.34761 3.36532 3.41223 3.97688 4.12882 4.44225 4.91953 4.97102 5.08005 5.12394 5.25302 5.29734 5.33497 5.36087 5.45307 5.52778 5.60633 5.64543 5.71208 5.74587 5.81139 5.87349 5.90950 6.01139 6.03798 6.07142 6.11821 6.18679 6.21180 6.22791 6.29621 6.35197 6.40876 6.49210 6.54138 6.71412 7.03940 7.27454 7.38357 7.43279 7.56208 7.91412 8.23550 8.43412 8.89872 9.09268 9.55619 11.02988 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.005418 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.251181 B = 5166.628150 C = 5828.072135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.065 3.935 4 H 0.081 0.919 5 C -0.106 4.106 6 C -0.121 4.121 7 C -0.111 4.111 8 C 0.037 3.963 9 N -0.511 5.511 10 C 0.028 3.972 11 C 0.475 3.525 12 O -0.538 6.538 13 N -0.596 5.596 14 C 0.106 3.894 15 C -0.169 4.169 16 C 0.247 3.753 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.040 0.960 46 H 0.030 0.970 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -6.327 -15.405 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.043 4.043 4 H 0.099 0.901 5 C -0.144 4.144 6 C -0.159 4.159 7 C -0.149 4.149 8 C -0.090 4.090 9 N -0.234 5.234 10 C -0.104 4.104 11 C 0.261 3.739 12 O -0.417 6.417 13 N -0.328 5.328 14 C -0.018 4.018 15 C -0.228 4.228 16 C 0.127 3.873 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.048 0.952 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.348 -5.961 -15.688 16.837 hybrid contribution 0.376 0.976 1.427 1.769 sum 1.724 -4.985 -14.261 15.206 Atomic orbital electron populations 1.21769 0.95764 1.01371 1.01849 1.21627 0.95696 0.96515 1.01790 1.21958 0.87532 0.95998 0.98807 0.90146 1.21599 0.99801 0.95484 0.97514 1.21566 0.96064 0.97000 1.01251 1.21521 0.95946 0.99464 0.97940 1.22298 0.99146 0.89055 0.98520 1.62428 1.10256 1.14006 1.36735 1.22424 1.01068 0.99297 0.87605 1.21626 0.81691 0.84994 0.85569 1.90567 1.41815 1.23369 1.85905 1.48416 1.47256 1.27500 1.09647 1.21405 0.92630 0.84923 1.02834 1.22244 1.00893 0.97737 1.01901 1.19228 0.93647 0.94193 0.80191 1.21415 1.03257 1.23428 1.08080 0.92613 1.24935 0.95265 0.96865 0.97063 1.69934 1.19321 1.43111 1.21108 0.86516 0.80794 0.81811 0.78404 1.20598 1.21144 1.19948 0.92547 0.92727 0.92965 0.91787 0.92194 0.91859 0.91907 0.91952 0.92487 0.92051 0.91910 0.90984 0.91806 0.88790 0.88191 0.89948 0.91801 0.92153 0.92991 0.92125 0.94237 0.95220 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.49 37.16 0.35 -1.46 16 2 C -0.12 -1.56 5.12 -26.73 -0.14 -1.70 16 3 C 0.06 0.98 1.45 -67.72 -0.10 0.88 16 4 H 0.08 1.54 5.62 -51.93 -0.29 1.24 16 5 C -0.11 -1.37 5.09 -26.65 -0.14 -1.50 16 6 C -0.12 -1.56 6.00 -26.61 -0.16 -1.72 16 7 C -0.11 -1.44 6.09 -26.65 -0.16 -1.60 16 8 C 0.04 0.58 5.09 -3.84 -0.02 0.57 16 9 N -0.51 -7.74 4.69 -228.13 -1.07 -8.81 16 10 C 0.03 0.42 3.88 -4.98 -0.02 0.40 16 11 C 0.48 9.57 6.96 -10.99 -0.08 9.49 16 12 O -0.54 -12.88 11.27 5.56 0.06 -12.82 16 13 N -0.60 -12.36 2.46 -175.07 -0.43 -12.79 16 14 C 0.11 1.68 5.86 -4.05 -0.02 1.66 16 15 C -0.17 -2.22 10.14 37.15 0.38 -1.85 16 16 C 0.25 6.42 5.12 -5.19 -0.03 6.39 16 17 C -0.52 -14.85 9.39 -34.44 -0.32 -15.17 16 18 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 21 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.59 6.85 -51.93 -0.36 0.23 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.84 5.87 -51.93 -0.30 0.54 16 30 H 0.06 0.76 6.71 -51.93 -0.35 0.41 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.40 5.75 -51.93 -0.30 1.10 16 37 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.09 1.31 7.49 -51.93 -0.39 0.92 16 39 H 0.10 1.35 4.63 -51.93 -0.24 1.11 16 40 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 41 H 0.06 0.85 6.69 -51.93 -0.35 0.50 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.66 6.58 -51.93 -0.34 0.31 16 44 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 45 H 0.04 1.17 7.49 -51.93 -0.39 0.78 16 46 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -31.51 353.12 -9.29 -40.80 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -8.34 Total: 1.26 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.55 Total: -3.97 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.76 Total: -47.60 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.06 Total: -12.82 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.51 -9.29 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076425651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.141 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds