Wall clock time and date at job start Tue Mar 31 2020 05:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 H 1.08993 * 109.45901 * 303.96416 * 3 2 1 5 5 C 1.53043 * 109.46120 * 63.92885 * 3 2 1 6 6 C 1.53197 * 109.29810 * 179.19402 * 5 3 2 7 7 C 1.53122 * 109.11731 * 302.37279 * 6 5 3 8 8 C 1.53036 * 109.31086 * 57.63389 * 7 6 5 9 9 N 1.46842 * 109.52514 * 300.80152 * 8 7 6 10 10 C 1.46904 * 110.99832 * 185.83731 * 9 8 7 11 11 C 1.50698 * 109.47327 * 294.48749 * 10 9 8 12 12 O 1.21284 * 119.99891 * 5.49482 * 11 10 9 13 13 N 1.34778 * 119.99938 * 185.49811 * 11 10 9 14 14 C 1.46500 * 120.00019 * 4.94055 * 13 11 10 15 15 C 1.52994 * 109.47097 * 85.51212 * 14 13 11 16 16 C 1.46503 * 119.99957 * 184.93858 * 13 11 10 17 17 C 1.50697 * 109.46827 * 89.99701 * 16 13 11 18 18 H 1.08003 * 120.00343 * 0.02562 * 17 16 13 19 19 C 1.37879 * 120.00021 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00368 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99825 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46743 * 90.00197 * 21 19 17 23 23 H 1.48500 * 109.47371 * 210.00101 * 21 19 17 24 24 H 1.48498 * 109.47160 * 330.00339 * 21 19 17 25 25 H 1.09002 * 109.47018 * 304.70059 * 1 2 3 26 26 H 1.08999 * 109.47008 * 64.69834 * 1 2 3 27 27 H 1.09001 * 109.47186 * 184.70549 * 1 2 3 28 28 H 1.08995 * 109.46647 * 239.99980 * 2 1 3 29 29 H 1.09006 * 109.47014 * 119.99940 * 2 1 3 30 30 H 1.09002 * 109.50412 * 299.14025 * 5 3 2 31 31 H 1.09004 * 109.49729 * 59.25262 * 5 3 2 32 32 H 1.08996 * 109.57823 * 182.46667 * 6 5 3 33 33 H 1.08997 * 109.51340 * 62.24156 * 6 5 3 34 34 H 1.08999 * 109.50449 * 297.67616 * 7 6 5 35 35 H 1.09001 * 109.50716 * 177.60025 * 7 6 5 36 36 H 1.09005 * 109.46103 * 60.82337 * 8 7 6 37 37 H 1.09004 * 109.46459 * 180.79524 * 8 7 6 38 38 H 1.08997 * 109.47183 * 54.48995 * 10 9 8 39 39 H 1.09005 * 109.46545 * 174.48749 * 10 9 8 40 40 H 1.09003 * 109.46880 * 205.51114 * 14 13 11 41 41 H 1.09004 * 109.47161 * 325.50954 * 14 13 11 42 42 H 1.09004 * 109.47090 * 185.00758 * 15 14 13 43 43 H 1.09003 * 109.47555 * 305.00453 * 15 14 13 44 44 H 1.08997 * 109.47232 * 65.00401 * 15 14 13 45 45 H 1.08990 * 109.47307 * 210.00095 * 16 13 11 46 46 H 1.09000 * 109.47097 * 330.00142 * 16 13 11 47 47 H 0.96999 * 120.00276 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6198 1.9762 -0.8523 5 6 1.6121 2.1346 1.2962 6 6 2.1417 3.5721 1.3012 7 6 3.6653 3.5458 1.1508 8 6 4.0337 2.8127 -0.1411 9 7 3.5053 1.4434 -0.0961 10 6 3.9571 0.6664 -1.2581 11 6 3.3641 1.2505 -2.5144 12 8 2.7186 2.2759 -2.4603 13 7 3.5509 0.6333 -3.6979 14 6 4.2369 -0.6602 -3.7493 15 6 3.2274 -1.7830 -3.5021 16 6 3.0679 1.2559 -4.9329 17 6 4.1479 2.1360 -5.5074 18 1 5.0991 2.2226 -5.0031 19 6 3.9218 2.8308 -6.6767 20 7 4.8644 3.5985 -7.1783 21 14 2.2764 2.6815 -7.5484 22 1 1.3507 3.7260 -7.0407 23 1 2.4721 2.8614 -9.0094 24 1 1.6982 1.3387 -7.2880 25 1 -0.3633 0.5850 0.8449 26 1 -0.3633 0.4392 -0.9291 27 1 -0.3633 -1.0242 0.0843 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.5240 2.1476 1.3597 31 1 2.0206 1.5934 2.1496 32 1 1.8770 4.0556 2.2415 33 1 1.7032 4.1246 0.4703 34 1 4.1061 3.0268 2.0019 35 1 4.0448 4.5668 1.1108 36 1 3.6041 3.3400 -0.9930 37 1 5.1184 2.7801 -0.2436 38 1 5.0448 0.7027 -1.3189 39 1 3.6336 -0.3690 -1.1508 40 1 4.6927 -0.7909 -4.7307 41 1 5.0106 -0.6919 -2.9821 42 1 3.7509 -2.7377 -3.4519 43 1 2.7076 -1.6037 -2.5609 44 1 2.5044 -1.8075 -4.3175 45 1 2.8095 0.4803 -5.6538 46 1 2.1859 1.8582 -4.7154 47 1 4.7052 4.0875 -8.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076425653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:14 Heat of formation + Delta-G solvation = -40.359438 kcal Electronic energy + Delta-G solvation = -24366.349819 eV Core-core repulsion = 21162.765588 eV Total energy + Delta-G solvation = -3203.584232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23312 -38.06155 -35.40987 -33.88531 -33.32810 -32.63783 -30.38416 -29.07787 -28.44011 -26.49784 -24.23211 -23.15200 -22.98820 -21.84143 -20.64221 -19.60064 -18.25246 -16.94649 -16.47540 -16.11960 -15.33343 -15.09951 -14.87796 -14.38126 -14.09819 -14.01378 -13.55347 -13.37296 -13.22138 -13.04569 -12.67445 -12.44795 -12.41692 -12.15686 -11.86344 -11.69085 -11.56547 -11.36571 -11.34272 -11.00820 -10.94796 -10.72871 -10.52441 -10.50847 -10.46462 -10.15757 -10.08166 -9.89069 -9.70865 -9.50175 -8.61577 -7.78688 -7.63280 -6.11496 -4.10279 3.26490 3.28068 3.32682 3.34544 3.84484 4.08893 4.36993 4.86758 4.92239 5.01680 5.06858 5.20614 5.23865 5.27041 5.32771 5.41030 5.47091 5.52921 5.58422 5.66117 5.71261 5.72830 5.84811 5.85782 5.94312 5.99609 6.03130 6.09239 6.11539 6.14147 6.16161 6.26153 6.31379 6.36389 6.42282 6.51322 6.67517 6.68935 6.93556 7.22857 7.34992 7.35612 7.59092 8.24563 8.44724 8.89585 8.96061 9.49121 11.01831 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.005529 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.354014 B = 5062.903247 C = 5559.561002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.065 3.935 4 H 0.080 0.920 5 C -0.107 4.107 6 C -0.121 4.121 7 C -0.111 4.111 8 C 0.037 3.963 9 N -0.511 5.511 10 C 0.029 3.971 11 C 0.481 3.519 12 O -0.540 6.540 13 N -0.592 5.592 14 C 0.106 3.894 15 C -0.170 4.170 16 C 0.215 3.785 17 C -0.528 4.528 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.876 3.124 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.027 0.973 46 H 0.035 0.965 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.664 -8.910 15.406 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.043 4.043 4 H 0.098 0.902 5 C -0.144 4.144 6 C -0.159 4.159 7 C -0.149 4.149 8 C -0.090 4.090 9 N -0.234 5.234 10 C -0.103 4.103 11 C 0.267 3.733 12 O -0.419 6.419 13 N -0.323 5.323 14 C -0.018 4.018 15 C -0.229 4.229 16 C 0.094 3.906 17 C -0.567 4.567 18 H 0.091 0.909 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.703 3.297 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.191 1.191 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.045 0.955 46 H 0.053 0.947 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.771 -8.461 15.694 18.457 hybrid contribution -0.910 0.336 -1.466 1.758 sum -5.682 -8.125 14.228 17.342 Atomic orbital electron populations 1.21790 0.95816 1.01242 1.02002 1.21645 0.95635 0.96570 1.01859 1.21938 0.87634 0.95955 0.98810 0.90247 1.21628 0.99749 0.95555 0.97513 1.21579 0.96135 0.96903 1.01252 1.21524 0.95863 0.99574 0.97932 1.22310 0.99359 0.88855 0.98506 1.62427 1.10145 1.14170 1.36609 1.22410 1.01305 0.99249 0.87314 1.21667 0.81135 0.84916 0.85568 1.90554 1.41070 1.24416 1.85881 1.48095 1.56563 1.19939 1.07737 1.21436 0.94297 0.82786 1.03321 1.22266 1.00251 0.98440 1.01900 1.19629 0.96257 0.93512 0.81196 1.21323 1.00768 1.26448 1.08141 0.90858 1.24855 0.96612 0.94603 0.96903 1.69893 1.33167 1.29274 1.21236 0.86855 0.84684 0.79200 0.78972 1.19978 1.21040 1.19119 0.92489 0.92772 0.92966 0.92199 0.91698 0.91856 0.91843 0.92443 0.91993 0.91874 0.91953 0.90997 0.91595 0.88404 0.88207 0.89662 0.91421 0.91856 0.92921 0.92340 0.95489 0.94693 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.76 37.16 0.36 -1.33 16 2 C -0.12 -1.49 5.12 -26.73 -0.14 -1.63 16 3 C 0.06 0.94 1.44 -67.72 -0.10 0.84 16 4 H 0.08 1.45 5.60 -51.93 -0.29 1.16 16 5 C -0.11 -1.33 5.09 -26.61 -0.14 -1.46 16 6 C -0.12 -1.53 6.01 -26.57 -0.16 -1.69 16 7 C -0.11 -1.45 6.09 -26.65 -0.16 -1.61 16 8 C 0.04 0.59 5.09 -3.84 -0.02 0.57 16 9 N -0.51 -7.63 4.69 -228.12 -1.07 -8.70 16 10 C 0.03 0.44 3.78 -4.98 -0.02 0.42 16 11 C 0.48 9.46 6.94 -10.99 -0.08 9.38 16 12 O -0.54 -12.55 11.20 5.55 0.06 -12.49 16 13 N -0.59 -11.89 2.46 -175.06 -0.43 -12.32 16 14 C 0.11 1.62 5.84 -4.04 -0.02 1.59 16 15 C -0.17 -2.10 10.09 37.15 0.37 -1.73 16 16 C 0.21 5.23 4.25 -5.19 -0.02 5.21 16 17 C -0.53 -15.11 9.94 -34.44 -0.34 -15.45 16 18 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 19 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 21 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 22 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 25 H 0.06 0.59 6.33 -51.93 -0.33 0.26 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.79 5.16 -51.93 -0.27 0.52 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.72 6.48 -51.93 -0.34 0.39 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.40 5.77 -51.93 -0.30 1.10 16 37 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 38 H 0.10 1.39 7.76 -51.93 -0.40 0.99 16 39 H 0.10 1.29 4.78 -51.93 -0.25 1.05 16 40 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 41 H 0.07 0.88 6.76 -51.93 -0.35 0.53 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.63 6.19 -51.93 -0.32 0.31 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 46 H 0.04 0.92 6.79 -51.93 -0.35 0.57 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -32.25 348.08 -8.87 -41.12 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -8.22 Total: 1.88 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -0.55 Total: -4.87 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.73 Total: -47.91 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.06 Total: -12.49 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.25 -8.87 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076425653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.756 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds