Wall clock time and date at job start Tue Mar 31 2020 05:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 H 1.08993 * 109.45901 * 303.96416 * 3 2 1 5 5 C 1.53043 * 109.46120 * 63.92885 * 3 2 1 6 6 C 1.53197 * 109.29810 * 179.19402 * 5 3 2 7 7 C 1.53122 * 109.11731 * 302.37279 * 6 5 3 8 8 C 1.53036 * 109.31086 * 57.63389 * 7 6 5 9 9 N 1.46842 * 109.52514 * 300.80152 * 8 7 6 10 10 C 1.46904 * 110.99832 * 185.83731 * 9 8 7 11 11 C 1.50698 * 109.47327 * 294.48749 * 10 9 8 12 12 O 1.21284 * 119.99891 * 5.49482 * 11 10 9 13 13 N 1.34778 * 119.99938 * 185.49811 * 11 10 9 14 14 C 1.46500 * 120.00019 * 4.94055 * 13 11 10 15 15 C 1.52994 * 109.47097 * 85.51212 * 14 13 11 16 16 C 1.46503 * 119.99957 * 184.93858 * 13 11 10 17 17 C 1.50697 * 109.46827 * 89.99701 * 16 13 11 18 18 H 1.08003 * 120.00343 * 0.02562 * 17 16 13 19 19 C 1.37879 * 120.00021 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00368 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99825 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46743 * 90.00197 * 21 19 17 23 23 H 1.48500 * 109.47371 * 210.00101 * 21 19 17 24 24 H 1.48498 * 109.47160 * 330.00339 * 21 19 17 25 25 H 1.09002 * 109.47018 * 304.70059 * 1 2 3 26 26 H 1.08999 * 109.47008 * 64.69834 * 1 2 3 27 27 H 1.09001 * 109.47186 * 184.70549 * 1 2 3 28 28 H 1.08995 * 109.46647 * 239.99980 * 2 1 3 29 29 H 1.09006 * 109.47014 * 119.99940 * 2 1 3 30 30 H 1.09002 * 109.50412 * 299.14025 * 5 3 2 31 31 H 1.09004 * 109.49729 * 59.25262 * 5 3 2 32 32 H 1.08996 * 109.57823 * 182.46667 * 6 5 3 33 33 H 1.08997 * 109.51340 * 62.24156 * 6 5 3 34 34 H 1.08999 * 109.50449 * 297.67616 * 7 6 5 35 35 H 1.09001 * 109.50716 * 177.60025 * 7 6 5 36 36 H 1.09005 * 109.46103 * 60.82337 * 8 7 6 37 37 H 1.09004 * 109.46459 * 180.79524 * 8 7 6 38 38 H 1.08997 * 109.47183 * 54.48995 * 10 9 8 39 39 H 1.09005 * 109.46545 * 174.48749 * 10 9 8 40 40 H 1.09003 * 109.46880 * 205.51114 * 14 13 11 41 41 H 1.09004 * 109.47161 * 325.50954 * 14 13 11 42 42 H 1.09004 * 109.47090 * 185.00758 * 15 14 13 43 43 H 1.09003 * 109.47555 * 305.00453 * 15 14 13 44 44 H 1.08997 * 109.47232 * 65.00401 * 15 14 13 45 45 H 1.08990 * 109.47307 * 210.00095 * 16 13 11 46 46 H 1.09000 * 109.47097 * 330.00142 * 16 13 11 47 47 H 0.96999 * 120.00276 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6198 1.9762 -0.8523 5 6 1.6121 2.1346 1.2962 6 6 2.1417 3.5721 1.3012 7 6 3.6653 3.5458 1.1508 8 6 4.0337 2.8127 -0.1411 9 7 3.5053 1.4434 -0.0961 10 6 3.9571 0.6664 -1.2581 11 6 3.3641 1.2505 -2.5144 12 8 2.7186 2.2759 -2.4603 13 7 3.5509 0.6333 -3.6979 14 6 4.2369 -0.6602 -3.7493 15 6 3.2274 -1.7830 -3.5021 16 6 3.0679 1.2559 -4.9329 17 6 4.1479 2.1360 -5.5074 18 1 5.0991 2.2226 -5.0031 19 6 3.9218 2.8308 -6.6767 20 7 4.8644 3.5985 -7.1783 21 14 2.2764 2.6815 -7.5484 22 1 1.3507 3.7260 -7.0407 23 1 2.4721 2.8614 -9.0094 24 1 1.6982 1.3387 -7.2880 25 1 -0.3633 0.5850 0.8449 26 1 -0.3633 0.4392 -0.9291 27 1 -0.3633 -1.0242 0.0843 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.5240 2.1476 1.3597 31 1 2.0206 1.5934 2.1496 32 1 1.8770 4.0556 2.2415 33 1 1.7032 4.1246 0.4703 34 1 4.1061 3.0268 2.0019 35 1 4.0448 4.5668 1.1108 36 1 3.6041 3.3400 -0.9930 37 1 5.1184 2.7801 -0.2436 38 1 5.0448 0.7027 -1.3189 39 1 3.6336 -0.3690 -1.1508 40 1 4.6927 -0.7909 -4.7307 41 1 5.0106 -0.6919 -2.9821 42 1 3.7509 -2.7377 -3.4519 43 1 2.7076 -1.6037 -2.5609 44 1 2.5044 -1.8075 -4.3175 45 1 2.8095 0.4803 -5.6538 46 1 2.1859 1.8582 -4.7154 47 1 4.7052 4.0875 -8.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076425653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:14 Heat of formation + Delta-G solvation = -61.825380 kcal Electronic energy + Delta-G solvation = -24367.280653 eV Core-core repulsion = 21162.765588 eV Total energy + Delta-G solvation = -3204.515065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.60386 -39.40184 -36.96494 -35.03545 -34.85210 -34.33969 -31.92024 -30.20887 -29.94319 -28.02683 -25.25204 -24.73452 -24.24958 -23.35476 -21.73488 -20.81370 -19.73202 -19.14023 -17.95333 -17.46210 -16.69018 -16.57369 -16.21159 -15.87667 -15.53607 -15.14739 -14.87690 -14.75397 -14.47713 -14.40297 -14.06962 -13.76998 -13.68121 -13.47848 -13.37316 -13.21935 -12.72499 -12.63315 -12.56934 -12.38799 -12.33804 -12.09963 -11.99411 -11.88183 -11.79500 -11.60175 -11.49578 -11.20480 -11.17253 -10.91580 -10.87372 -9.41119 -9.06030 -8.38663 -6.43403 1.27106 1.30699 1.39390 1.75699 2.25639 2.33624 2.89908 2.95614 3.70494 3.82453 3.90800 3.98125 4.11752 4.15600 4.32365 4.35529 4.40229 4.45950 4.51468 4.53925 4.60356 4.64567 4.76837 4.79599 4.83741 4.87621 4.91595 4.98146 4.99978 5.01932 5.08305 5.12574 5.15059 5.17324 5.26462 5.35599 5.39174 5.41767 5.45487 5.55831 5.67486 5.99633 6.14109 6.20980 6.57772 6.71988 7.17780 7.41953 8.78191 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.005529 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.354014 B = 5062.903247 C = 5559.561002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.062 3.938 4 H 0.036 0.964 5 C -0.102 4.102 6 C -0.122 4.122 7 C -0.106 4.106 8 C 0.036 3.964 9 N -0.498 5.498 10 C 0.038 3.962 11 C 0.471 3.529 12 O -0.583 6.583 13 N -0.601 5.601 14 C 0.097 3.903 15 C -0.160 4.160 16 C 0.227 3.773 17 C -0.534 4.534 18 H 0.029 0.971 19 C 0.013 3.987 20 N -0.944 5.944 21 Si 0.946 3.054 22 H -0.279 1.279 23 H -0.272 1.272 24 H -0.241 1.241 25 H 0.067 0.933 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.043 0.957 46 H 0.013 0.987 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.738 -11.484 17.347 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.046 4.046 4 H 0.054 0.946 5 C -0.140 4.140 6 C -0.159 4.159 7 C -0.143 4.143 8 C -0.092 4.092 9 N -0.220 5.220 10 C -0.094 4.094 11 C 0.260 3.740 12 O -0.464 6.464 13 N -0.332 5.332 14 C -0.025 4.025 15 C -0.218 4.218 16 C 0.104 3.896 17 C -0.573 4.573 18 H 0.047 0.953 19 C -0.186 4.186 20 N -0.584 5.584 21 Si 0.769 3.231 22 H -0.204 1.204 23 H -0.197 1.197 24 H -0.164 1.164 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.148 0.852 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.031 0.969 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.828 -11.085 17.657 21.647 hybrid contribution -0.480 1.188 -2.034 2.404 sum -6.308 -9.897 15.623 19.540 Atomic orbital electron populations 1.21769 0.94979 1.02473 1.01304 1.21630 0.96370 0.94873 1.02382 1.21960 0.86949 0.97322 0.98329 0.94612 1.21625 1.00535 0.95080 0.96749 1.21594 0.95656 0.97253 1.01422 1.21505 0.96340 0.99672 0.96815 1.22277 0.99113 0.89372 0.98423 1.62553 1.10567 1.13318 1.35575 1.22546 1.01629 1.00412 0.84793 1.22607 0.80397 0.84331 0.86684 1.90560 1.42865 1.26370 1.86649 1.48235 1.56932 1.21589 1.06489 1.21767 0.95585 0.81445 1.03729 1.22184 0.99391 0.98538 1.01676 1.19224 0.93949 0.93126 0.83317 1.21547 1.00209 1.27410 1.08091 0.95312 1.25818 1.00809 0.94081 0.97849 1.70040 1.35686 1.30566 1.22085 0.85749 0.79251 0.80222 0.77924 1.20439 1.19728 1.16427 0.91424 0.94983 0.91020 0.92928 0.89659 0.90775 0.90081 0.89897 0.94677 0.89967 0.91529 0.95599 0.91501 0.87223 0.85153 0.90868 0.88828 0.88412 0.92286 0.93506 0.93904 0.96879 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.76 71.98 0.70 -2.31 16 2 C -0.11 -2.59 5.12 30.60 0.16 -2.43 16 3 C 0.06 1.76 1.44 44.94 0.06 1.82 16 4 H 0.04 1.36 5.60 -2.39 -0.01 1.35 16 5 C -0.10 -2.34 5.09 30.67 0.16 -2.19 16 6 C -0.12 -2.95 6.01 30.70 0.18 -2.77 16 7 C -0.11 -2.65 6.09 30.65 0.19 -2.46 16 8 C 0.04 1.16 5.09 86.33 0.44 1.60 16 9 N -0.50 -14.35 4.69 -875.64 -4.11 -18.46 16 10 C 0.04 1.09 3.78 85.56 0.32 1.41 16 11 C 0.47 18.92 6.94 87.66 0.61 19.53 16 12 O -0.58 -28.60 11.20 -3.04 -0.03 -28.63 16 13 N -0.60 -24.39 2.46 -826.16 -2.04 -26.43 16 14 C 0.10 2.83 5.84 86.38 0.50 3.34 16 15 C -0.16 -3.49 10.09 71.98 0.73 -2.76 16 16 C 0.23 11.25 4.25 85.63 0.36 11.62 16 17 C -0.53 -31.82 9.94 25.60 0.25 -31.57 16 18 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 19 C 0.01 0.75 5.47 84.66 0.46 1.22 16 20 N -0.94 -60.25 13.96 21.45 0.30 -59.95 16 21 Si 0.95 45.40 27.47 68.60 1.88 47.28 16 22 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 25 H 0.07 1.22 6.33 -2.39 -0.02 1.21 16 26 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.25 5.16 -2.39 -0.01 1.24 16 29 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.07 1.53 6.48 -2.39 -0.02 1.52 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.03 1.08 5.77 -2.38 -0.01 1.06 16 37 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 38 H 0.11 2.95 7.76 -2.39 -0.02 2.93 16 39 H 0.13 2.99 4.78 -2.38 -0.01 2.98 16 40 H 0.07 2.31 8.04 -2.39 -0.02 2.29 16 41 H 0.09 2.22 6.76 -2.38 -0.02 2.21 16 42 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 1.22 6.19 -2.39 -0.01 1.21 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.04 1.98 7.13 -2.39 -0.02 1.97 16 46 H 0.01 0.71 6.79 -2.39 -0.02 0.69 16 47 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -75.20 348.08 2.01 -73.19 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.87 Total: 18.94 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 5.13 Total: -5.95 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -5.85 Total: -104.84 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.03 Total: -28.63 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -75.20 2.01 -73.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076425653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.366 kcal (2) G-P(sol) polarization free energy of solvation -75.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds