Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47022 * 2 1 4 4 H 1.08998 * 109.70119 * 59.73157 * 3 2 1 5 5 C 1.52760 * 109.51045 * 299.60889 * 3 2 1 6 6 C 1.53047 * 109.38010 * 185.70643 * 5 3 2 7 7 C 1.53041 * 109.53844 * 61.24168 * 6 5 3 8 8 C 1.53191 * 109.31305 * 298.63110 * 7 6 5 9 9 N 1.46929 * 108.77294 * 54.63646 * 8 7 6 10 10 C 1.34777 * 120.62902 * 126.37041 * 9 8 7 11 11 O 1.21284 * 120.00137 * 184.97469 * 10 9 8 12 12 C 1.50700 * 120.00153 * 4.96986 * 10 9 8 13 13 H 1.08994 * 109.47317 * 326.61153 * 12 10 9 14 14 C 1.53002 * 109.46921 * 86.61300 * 12 10 9 15 15 N 1.46901 * 109.47171 * 206.60978 * 12 10 9 16 16 C 1.46893 * 111.00007 * 56.75906 * 15 12 10 17 17 C 1.46898 * 110.99767 * 180.71295 * 15 12 10 18 18 C 1.50707 * 109.47208 * 170.00291 * 17 15 12 19 19 H 1.08001 * 119.99314 * 359.97438 * 18 17 15 20 20 C 1.37870 * 119.99826 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00485 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99778 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47252 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47088 * 300.00255 * 22 20 18 25 25 H 1.48504 * 109.46844 * 60.00238 * 22 20 18 26 26 H 1.08997 * 109.47297 * 185.33708 * 1 2 3 27 27 H 1.08998 * 109.47099 * 305.33635 * 1 2 3 28 28 H 1.09002 * 109.47249 * 65.33947 * 1 2 3 29 29 H 1.09001 * 109.47271 * 240.00011 * 2 1 3 30 30 H 1.09000 * 109.47580 * 119.99965 * 2 1 3 31 31 H 1.08996 * 109.56513 * 65.67525 * 5 3 2 32 32 H 1.08999 * 109.36057 * 305.61468 * 5 3 2 33 33 H 1.09003 * 109.46076 * 301.22016 * 6 5 3 34 34 H 1.09000 * 109.44820 * 181.25534 * 6 5 3 35 35 H 1.09000 * 109.49446 * 178.68209 * 7 6 5 36 36 H 1.08995 * 109.49698 * 58.58229 * 7 6 5 37 37 H 1.08994 * 109.58942 * 294.85172 * 8 7 6 38 38 H 1.08999 * 109.70817 * 174.49001 * 8 7 6 39 39 H 1.08992 * 109.47346 * 176.03975 * 14 12 10 40 40 H 1.09008 * 109.47222 * 296.03985 * 14 12 10 41 41 H 1.09004 * 109.47084 * 56.03531 * 14 12 10 42 42 H 1.08995 * 109.47510 * 188.52207 * 16 15 12 43 43 H 1.09001 * 109.46956 * 308.52182 * 16 15 12 44 44 H 1.09005 * 109.47421 * 68.51883 * 16 15 12 45 45 H 1.09001 * 109.47650 * 49.99691 * 17 15 12 46 46 H 1.09004 * 109.47133 * 290.00281 * 17 15 12 47 47 H 0.97003 * 120.00172 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6748 1.9614 0.8863 5 6 1.5393 2.1607 -1.2519 6 6 2.1654 3.5555 -1.3218 7 6 3.6879 3.4292 -1.4117 8 6 4.2130 2.7261 -0.1560 9 7 3.5093 1.4455 -0.0020 10 6 4.1985 0.2947 0.1295 11 8 3.6089 -0.7645 0.1652 12 6 5.7017 0.3242 0.2319 13 1 6.0908 1.1461 -0.3690 14 6 6.1095 0.5231 1.6931 15 7 6.2511 -0.9458 -0.2612 16 6 5.8155 -1.2081 -1.6393 17 6 7.7166 -0.9598 -0.1606 18 6 8.2260 -2.3506 -0.4391 19 1 7.5305 -3.1446 -0.6676 20 6 9.5797 -2.6091 -0.4022 21 7 10.4266 -1.6420 -0.1245 22 14 10.2111 -4.3331 -0.7468 23 1 11.6926 -4.3470 -0.6464 24 1 9.6383 -5.2776 0.2457 25 1 9.8043 -4.7451 -2.1143 26 1 -0.3634 -1.0232 0.0956 27 1 -0.3633 0.5944 0.8383 28 1 -0.3634 0.4288 -0.9339 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.4538 2.2508 -1.2114 32 1 1.8248 1.5890 -2.1349 33 1 1.8998 4.1180 -0.4268 34 1 1.7916 4.0772 -2.2029 35 1 4.1316 4.4221 -1.4851 36 1 3.9531 2.8456 -2.2932 37 1 4.0285 3.3517 0.7172 38 1 5.2831 2.5451 -0.2564 39 1 7.1950 0.4742 1.7773 40 1 5.7619 1.4970 2.0380 41 1 5.6618 -0.2600 2.3051 42 1 6.1080 -2.2179 -1.9270 43 1 4.7316 -1.1120 -1.7023 44 1 6.2837 -0.4889 -2.3115 45 1 8.0148 -0.6579 0.8435 46 1 8.1374 -0.2662 -0.8885 47 1 11.3790 -1.8240 -0.0982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = -21.491618 kcal Electronic energy + Delta-G solvation = -24049.624904 eV Core-core repulsion = 20846.858843 eV Total energy + Delta-G solvation = -3202.766062 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60100 -37.77431 -36.18354 -34.22621 -32.90595 -32.49895 -30.43037 -29.46570 -27.43714 -25.59353 -24.42466 -24.26852 -23.35037 -21.43174 -21.06854 -19.94464 -18.47033 -16.82416 -16.39510 -15.80289 -15.38814 -14.81939 -14.70471 -14.58278 -14.53714 -13.81702 -13.64567 -13.61404 -13.21237 -13.03573 -12.76293 -12.46079 -12.21871 -11.97724 -11.86529 -11.64123 -11.58407 -11.37081 -11.11033 -11.03379 -10.96111 -10.82958 -10.73431 -10.63044 -10.54944 -10.50234 -10.31837 -9.84821 -9.19679 -8.60907 -8.41129 -8.34557 -7.17394 -6.00419 -4.00484 2.97439 3.07547 3.37033 3.40095 3.44554 4.44201 4.52181 4.62682 4.67570 4.86751 4.92246 4.98070 5.13657 5.15354 5.27678 5.35106 5.37281 5.40798 5.54501 5.56959 5.64540 5.67794 5.74245 5.76560 5.79902 5.87985 5.91968 6.00465 6.12174 6.13684 6.21477 6.30380 6.39368 6.41884 6.51341 6.65297 6.83329 6.84004 7.26906 7.32090 7.57321 7.83944 8.08830 8.21000 8.52759 8.63000 9.06974 9.63245 11.10581 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026279 B = 0.004188 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.217780 B = 6684.752255 C = 7161.199241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C 0.149 3.851 4 H 0.065 0.935 5 C -0.133 4.133 6 C -0.119 4.119 7 C -0.136 4.136 8 C 0.103 3.897 9 N -0.617 5.617 10 C 0.523 3.477 11 O -0.510 6.510 12 C 0.064 3.936 13 H 0.047 0.953 14 C -0.139 4.139 15 N -0.517 5.517 16 C 0.038 3.962 17 C 0.190 3.810 18 C -0.504 4.504 19 H 0.063 0.937 20 C 0.055 3.945 21 N -0.901 5.901 22 Si 0.898 3.102 23 H -0.288 1.288 24 H -0.276 1.276 25 H -0.277 1.277 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.007 0.993 45 H 0.039 0.961 46 H -0.010 1.010 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.606 12.720 -0.636 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.149 4.149 3 C 0.046 3.954 4 H 0.083 0.917 5 C -0.171 4.171 6 C -0.156 4.156 7 C -0.175 4.175 8 C -0.020 4.020 9 N -0.353 5.353 10 C 0.311 3.689 11 O -0.384 6.384 12 C -0.048 4.048 13 H 0.064 0.936 14 C -0.196 4.196 15 N -0.243 5.243 16 C -0.110 4.110 17 C 0.066 3.934 18 C -0.543 4.543 19 H 0.082 0.918 20 C -0.145 4.145 21 N -0.541 5.541 22 Si 0.726 3.274 23 H -0.214 1.214 24 H -0.201 1.201 25 H -0.203 1.203 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.057 0.943 46 H 0.007 0.993 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.893 11.778 -0.286 20.596 hybrid contribution 0.828 -0.015 -0.794 1.148 sum -16.065 11.763 -1.080 19.940 Atomic orbital electron populations 1.21995 0.97296 1.01507 1.00914 1.22073 0.93250 0.94168 1.05428 1.21197 0.79363 0.97699 0.97149 0.91698 1.21977 1.00330 0.96097 0.98702 1.21513 0.95279 0.96948 1.01885 1.21925 0.96181 1.00832 0.98517 1.21818 0.97757 0.84728 0.97676 1.48251 1.06021 1.07036 1.73978 1.20804 0.89963 0.82986 0.75109 1.90704 1.69350 1.30284 1.48056 1.21655 0.90563 0.94218 0.98389 0.93588 1.21794 1.03574 1.00704 0.93567 1.61974 1.13749 1.27520 1.21050 1.22242 0.98575 1.01599 0.88585 1.19880 0.79237 0.97319 0.96976 1.21120 0.91484 0.94873 1.46789 0.91845 1.24959 0.96804 0.97255 0.95532 1.69940 1.02512 1.31942 1.49683 0.86554 0.77362 0.84587 0.78878 1.21397 1.20123 1.20310 0.92691 0.93327 0.93192 0.90697 0.89428 0.90846 0.91543 0.91915 0.91873 0.90768 0.91425 0.91549 0.89087 0.90131 0.93103 0.91518 0.90812 0.93023 0.97430 0.94317 0.99253 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.41 37.16 0.35 -1.30 16 2 C -0.11 -1.49 3.86 -26.73 -0.10 -1.59 16 3 C 0.15 1.74 3.00 -67.82 -0.20 1.54 16 4 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.13 -1.28 4.83 -26.83 -0.13 -1.41 16 6 C -0.12 -0.98 5.89 -26.69 -0.16 -1.14 16 7 C -0.14 -1.23 6.08 -26.61 -0.16 -1.40 16 8 C 0.10 1.10 6.32 -3.71 -0.02 1.08 16 9 N -0.62 -8.24 2.98 -165.47 -0.49 -8.74 16 10 C 0.52 8.97 5.68 -10.99 -0.06 8.91 16 11 O -0.51 -10.12 10.70 5.55 0.06 -10.06 16 12 C 0.06 1.18 1.80 -68.86 -0.12 1.05 16 13 H 0.05 0.81 5.95 -51.93 -0.31 0.50 16 14 C -0.14 -2.36 9.06 37.16 0.34 -2.02 16 15 N -0.52 -11.77 4.36 -237.73 -1.04 -12.80 16 16 C 0.04 0.83 8.98 60.06 0.54 1.36 16 17 C 0.19 4.97 4.53 -4.97 -0.02 4.95 16 18 C -0.50 -14.41 8.57 -34.44 -0.30 -14.71 16 19 H 0.06 1.83 7.10 -52.49 -0.37 1.46 16 20 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 22 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.46 6.87 -51.93 -0.36 0.10 16 29 H 0.07 1.17 7.05 -51.93 -0.37 0.81 16 30 H 0.09 1.39 6.43 -51.93 -0.33 1.06 16 31 H 0.07 0.61 6.88 -51.93 -0.36 0.25 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.03 5.34 -51.93 -0.28 0.75 16 39 H 0.08 1.49 5.99 -51.93 -0.31 1.18 16 40 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.67 6.99 -51.93 -0.36 1.31 16 43 H 0.05 1.05 5.90 -51.93 -0.31 0.74 16 44 H 0.01 0.15 8.09 -51.93 -0.42 -0.27 16 45 H 0.04 1.05 5.73 -51.93 -0.30 0.75 16 46 H -0.01 -0.28 8.08 -51.93 -0.42 -0.70 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -31.28 349.93 -8.91 -40.19 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.28 Total: -1.71 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.15 Total: -3.18 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.79 Total: -47.48 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.06 Total: -10.06 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.28 -8.91 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.699 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds