Wall clock time and date at job start Tue Mar 31 2020 05:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47022 * 2 1 4 4 H 1.08998 * 109.70119 * 59.73157 * 3 2 1 5 5 C 1.52760 * 109.51045 * 299.60889 * 3 2 1 6 6 C 1.53047 * 109.38010 * 185.70643 * 5 3 2 7 7 C 1.53041 * 109.53844 * 61.24168 * 6 5 3 8 8 C 1.53191 * 109.31305 * 298.63110 * 7 6 5 9 9 N 1.46929 * 108.77294 * 54.63646 * 8 7 6 10 10 C 1.34777 * 120.62902 * 126.37041 * 9 8 7 11 11 O 1.21284 * 120.00137 * 184.97469 * 10 9 8 12 12 C 1.50700 * 120.00153 * 4.96986 * 10 9 8 13 13 H 1.08994 * 109.47317 * 326.61153 * 12 10 9 14 14 C 1.53002 * 109.46921 * 86.61300 * 12 10 9 15 15 N 1.46901 * 109.47171 * 206.60978 * 12 10 9 16 16 C 1.46893 * 111.00007 * 56.75906 * 15 12 10 17 17 C 1.46898 * 110.99767 * 180.71295 * 15 12 10 18 18 C 1.50707 * 109.47208 * 170.00291 * 17 15 12 19 19 H 1.08001 * 119.99314 * 359.97438 * 18 17 15 20 20 C 1.37870 * 119.99826 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00485 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99778 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47252 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47088 * 300.00255 * 22 20 18 25 25 H 1.48504 * 109.46844 * 60.00238 * 22 20 18 26 26 H 1.08997 * 109.47297 * 185.33708 * 1 2 3 27 27 H 1.08998 * 109.47099 * 305.33635 * 1 2 3 28 28 H 1.09002 * 109.47249 * 65.33947 * 1 2 3 29 29 H 1.09001 * 109.47271 * 240.00011 * 2 1 3 30 30 H 1.09000 * 109.47580 * 119.99965 * 2 1 3 31 31 H 1.08996 * 109.56513 * 65.67525 * 5 3 2 32 32 H 1.08999 * 109.36057 * 305.61468 * 5 3 2 33 33 H 1.09003 * 109.46076 * 301.22016 * 6 5 3 34 34 H 1.09000 * 109.44820 * 181.25534 * 6 5 3 35 35 H 1.09000 * 109.49446 * 178.68209 * 7 6 5 36 36 H 1.08995 * 109.49698 * 58.58229 * 7 6 5 37 37 H 1.08994 * 109.58942 * 294.85172 * 8 7 6 38 38 H 1.08999 * 109.70817 * 174.49001 * 8 7 6 39 39 H 1.08992 * 109.47346 * 176.03975 * 14 12 10 40 40 H 1.09008 * 109.47222 * 296.03985 * 14 12 10 41 41 H 1.09004 * 109.47084 * 56.03531 * 14 12 10 42 42 H 1.08995 * 109.47510 * 188.52207 * 16 15 12 43 43 H 1.09001 * 109.46956 * 308.52182 * 16 15 12 44 44 H 1.09005 * 109.47421 * 68.51883 * 16 15 12 45 45 H 1.09001 * 109.47650 * 49.99691 * 17 15 12 46 46 H 1.09004 * 109.47133 * 290.00281 * 17 15 12 47 47 H 0.97003 * 120.00172 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6748 1.9614 0.8863 5 6 1.5393 2.1607 -1.2519 6 6 2.1654 3.5555 -1.3218 7 6 3.6879 3.4292 -1.4117 8 6 4.2130 2.7261 -0.1560 9 7 3.5093 1.4455 -0.0020 10 6 4.1985 0.2947 0.1295 11 8 3.6089 -0.7645 0.1652 12 6 5.7017 0.3242 0.2319 13 1 6.0908 1.1461 -0.3690 14 6 6.1095 0.5231 1.6931 15 7 6.2511 -0.9458 -0.2612 16 6 5.8155 -1.2081 -1.6393 17 6 7.7166 -0.9598 -0.1606 18 6 8.2260 -2.3506 -0.4391 19 1 7.5305 -3.1446 -0.6676 20 6 9.5797 -2.6091 -0.4022 21 7 10.4266 -1.6420 -0.1245 22 14 10.2111 -4.3331 -0.7468 23 1 11.6926 -4.3470 -0.6464 24 1 9.6383 -5.2776 0.2457 25 1 9.8043 -4.7451 -2.1143 26 1 -0.3634 -1.0232 0.0956 27 1 -0.3633 0.5944 0.8383 28 1 -0.3634 0.4288 -0.9339 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.4538 2.2508 -1.2114 32 1 1.8248 1.5890 -2.1349 33 1 1.8998 4.1180 -0.4268 34 1 1.7916 4.0772 -2.2029 35 1 4.1316 4.4221 -1.4851 36 1 3.9531 2.8456 -2.2932 37 1 4.0285 3.3517 0.7172 38 1 5.2831 2.5451 -0.2564 39 1 7.1950 0.4742 1.7773 40 1 5.7619 1.4970 2.0380 41 1 5.6618 -0.2600 2.3051 42 1 6.1080 -2.2179 -1.9270 43 1 4.7316 -1.1120 -1.7023 44 1 6.2837 -0.4889 -2.3115 45 1 8.0148 -0.6579 0.8435 46 1 8.1374 -0.2662 -0.8885 47 1 11.3790 -1.8240 -0.0982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:17 Heat of formation + Delta-G solvation = -41.059993 kcal Electronic energy + Delta-G solvation = -24050.473453 eV Core-core repulsion = 20846.858843 eV Total energy + Delta-G solvation = -3203.614610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.80034 -39.05065 -37.69042 -35.36158 -34.58537 -33.84771 -31.95678 -30.31778 -29.45850 -26.77953 -26.24930 -25.19417 -24.76511 -22.83706 -22.03075 -21.21869 -19.77365 -18.57601 -17.91613 -17.12747 -16.65414 -16.51813 -16.20274 -15.68398 -15.46156 -15.36111 -15.10982 -14.51127 -14.37419 -14.23230 -14.14854 -13.87518 -13.60865 -13.40427 -13.22814 -13.07211 -12.80661 -12.77465 -12.60575 -12.55339 -12.41142 -12.27392 -11.99906 -11.89271 -11.74554 -11.69278 -11.47824 -11.36900 -11.31414 -10.58887 -9.90666 -9.48318 -8.98944 -8.20391 -6.28957 1.40332 1.43321 1.51207 1.64431 1.95209 2.41044 3.11614 3.23345 3.49066 3.79814 3.86110 3.94765 4.08131 4.10126 4.18635 4.27361 4.32412 4.39026 4.43483 4.55392 4.57058 4.64181 4.72542 4.73711 4.81453 4.87953 4.92063 4.97657 5.00748 5.07192 5.13858 5.16298 5.17410 5.21033 5.28946 5.30774 5.35344 5.46275 5.50010 5.64251 5.80047 6.03658 6.27401 6.37188 6.61478 6.84593 7.30411 7.39750 8.90200 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026279 B = 0.004188 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.217780 B = 6684.752255 C = 7161.199241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 C 0.145 3.855 4 H 0.085 0.915 5 C -0.128 4.128 6 C -0.114 4.114 7 C -0.134 4.134 8 C 0.095 3.905 9 N -0.609 5.609 10 C 0.523 3.477 11 O -0.546 6.546 12 C 0.059 3.941 13 H 0.060 0.940 14 C -0.130 4.130 15 N -0.534 5.534 16 C 0.050 3.950 17 C 0.208 3.792 18 C -0.527 4.527 19 H 0.054 0.946 20 C 0.008 3.992 21 N -0.929 5.929 22 Si 0.965 3.035 23 H -0.278 1.278 24 H -0.272 1.272 25 H -0.270 1.270 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.011 0.989 45 H 0.026 0.974 46 H -0.034 1.034 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.041 14.493 -0.662 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C 0.043 3.957 4 H 0.103 0.897 5 C -0.166 4.166 6 C -0.152 4.152 7 C -0.172 4.172 8 C -0.027 4.027 9 N -0.343 5.343 10 C 0.311 3.689 11 O -0.423 6.423 12 C -0.053 4.053 13 H 0.077 0.923 14 C -0.188 4.188 15 N -0.260 5.260 16 C -0.099 4.099 17 C 0.082 3.918 18 C -0.566 4.566 19 H 0.072 0.928 20 C -0.191 4.191 21 N -0.570 5.570 22 Si 0.789 3.211 23 H -0.203 1.203 24 H -0.197 1.197 25 H -0.195 1.195 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.029 0.971 45 H 0.044 0.956 46 H -0.017 1.017 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.354 13.601 -0.318 22.847 hybrid contribution 1.225 -0.490 -0.772 1.529 sum -17.129 13.111 -1.090 21.598 Atomic orbital electron populations 1.21914 0.94739 1.01786 1.02451 1.21850 0.95384 0.94808 1.02324 1.21395 0.78045 0.96978 0.99258 0.89672 1.21947 1.01650 0.96517 0.96457 1.21517 0.94193 0.96029 1.03440 1.21924 0.97188 1.01419 0.96642 1.22095 0.97080 0.83705 0.99820 1.48278 1.07003 1.06849 1.72188 1.20503 0.89250 0.83707 0.75453 1.90715 1.69685 1.31867 1.50065 1.21777 0.91928 0.92479 0.99106 0.92271 1.21720 1.02142 1.02365 0.92575 1.61829 1.11696 1.30697 1.21748 1.22097 0.98993 1.00555 0.88231 1.19525 0.81313 0.95638 0.95306 1.21400 0.91983 0.95769 1.47409 0.92789 1.25791 0.96875 1.01386 0.94999 1.70043 1.02897 1.33950 1.50071 0.85509 0.77077 0.79533 0.78932 1.20339 1.19694 1.19548 0.93229 0.91584 0.91645 0.93886 0.92606 0.88760 0.93439 0.90197 0.90410 0.88441 0.93269 0.88869 0.90062 0.92048 0.89148 0.93051 0.92646 0.92060 0.97070 0.95583 1.01654 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.41 71.98 0.68 -2.21 16 2 C -0.11 -2.80 3.86 30.59 0.12 -2.69 16 3 C 0.15 3.12 3.00 44.83 0.13 3.26 16 4 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 5 C -0.13 -2.11 4.83 30.53 0.15 -1.96 16 6 C -0.11 -1.44 5.89 30.62 0.18 -1.26 16 7 C -0.13 -2.03 6.08 30.67 0.19 -1.84 16 8 C 0.09 1.78 6.32 86.36 0.55 2.32 16 9 N -0.61 -15.48 2.98 -795.82 -2.37 -17.85 16 10 C 0.52 18.07 5.68 87.66 0.50 18.57 16 11 O -0.55 -22.46 10.70 -3.04 -0.03 -22.49 16 12 C 0.06 2.20 1.80 44.17 0.08 2.28 16 13 H 0.06 2.07 5.95 -2.39 -0.01 2.06 16 14 C -0.13 -4.47 9.06 71.98 0.65 -3.81 16 15 N -0.53 -25.19 4.36 -906.04 -3.95 -29.14 16 16 C 0.05 2.21 8.98 127.69 1.15 3.36 16 17 C 0.21 11.28 4.53 85.56 0.39 11.67 16 18 C -0.53 -31.03 8.57 25.60 0.22 -30.81 16 19 H 0.05 3.21 7.10 -2.91 -0.02 3.19 16 20 C 0.01 0.46 5.46 84.65 0.46 0.92 16 21 N -0.93 -55.78 13.29 21.44 0.28 -55.50 16 22 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.05 6.87 -2.39 -0.02 1.03 16 29 H 0.04 1.39 7.05 -2.39 -0.02 1.38 16 30 H 0.06 1.83 6.43 -2.39 -0.02 1.82 16 31 H 0.09 1.20 6.88 -2.39 -0.02 1.18 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.69 5.34 -2.39 -0.01 1.68 16 39 H 0.06 2.33 5.99 -2.39 -0.01 2.32 16 40 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.05 2.62 6.99 -2.39 -0.02 2.60 16 43 H 0.06 2.58 5.90 -2.39 -0.01 2.57 16 44 H 0.01 0.47 8.09 -2.38 -0.02 0.45 16 45 H 0.03 1.48 5.73 -2.39 -0.01 1.46 16 46 H -0.03 -1.98 8.08 -2.38 -0.02 -1.99 16 47 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -69.99 349.93 2.32 -67.67 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.93 Total: 12.07 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.44 Total: -2.21 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -6.04 Total: -102.49 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.03 Total: -22.49 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.99 2.32 -67.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.607 kcal (2) G-P(sol) polarization free energy of solvation -69.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds