Wall clock time and date at job start Tue Mar 31 2020 05:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47421 * 2 1 4 4 H 1.08998 * 109.58360 * 297.34765 * 3 2 1 5 5 C 1.53191 * 109.58345 * 57.62555 * 3 2 1 6 6 C 1.53046 * 109.31056 * 174.42047 * 5 3 2 7 7 C 1.53033 * 109.52607 * 298.64395 * 6 5 3 8 8 C 1.53161 * 109.32874 * 61.37423 * 7 6 5 9 9 N 1.46917 * 109.58533 * 176.91428 * 3 2 1 10 10 C 1.34781 * 120.63312 * 6.62831 * 9 3 2 11 11 O 1.21280 * 119.99736 * 5.17671 * 10 9 3 12 12 C 1.50698 * 119.99997 * 185.17503 * 10 9 3 13 13 H 1.09011 * 109.47061 * 317.87057 * 12 10 9 14 14 C 1.52996 * 109.47337 * 77.87207 * 12 10 9 15 15 N 1.46902 * 109.46964 * 197.87624 * 12 10 9 16 16 C 1.46895 * 111.00430 * 62.47822 * 15 12 10 17 17 C 1.46906 * 110.99739 * 186.43293 * 15 12 10 18 18 C 1.50706 * 109.46617 * 169.99700 * 17 15 12 19 19 H 1.07997 * 119.99787 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99586 * 180.02562 * 18 17 15 21 21 N 1.31507 * 119.99944 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00110 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47261 * 89.99967 * 22 20 18 24 24 H 1.48497 * 109.47024 * 210.00281 * 22 20 18 25 25 H 1.48500 * 109.47056 * 329.99994 * 22 20 18 26 26 H 1.09004 * 109.47129 * 304.56646 * 1 2 3 27 27 H 1.09006 * 109.47198 * 64.56027 * 1 2 3 28 28 H 1.08991 * 109.47550 * 184.56427 * 1 2 3 29 29 H 1.08994 * 109.46739 * 239.99948 * 2 1 3 30 30 H 1.09003 * 109.46791 * 120.00048 * 2 1 3 31 31 H 1.09002 * 109.49779 * 54.47271 * 5 3 2 32 32 H 1.09004 * 109.50116 * 294.37226 * 5 3 2 33 33 H 1.08998 * 109.45741 * 58.65986 * 6 5 3 34 34 H 1.09003 * 109.45844 * 178.62583 * 6 5 3 35 35 H 1.09009 * 109.49693 * 181.30709 * 7 6 5 36 36 H 1.08999 * 109.49827 * 301.40214 * 7 6 5 37 37 H 1.09005 * 109.59120 * 185.57131 * 8 7 6 38 38 H 1.09000 * 109.70913 * 65.20874 * 8 7 6 39 39 H 1.09005 * 109.47235 * 186.03242 * 14 12 10 40 40 H 1.08995 * 109.47113 * 306.03360 * 14 12 10 41 41 H 1.09002 * 109.46750 * 66.03248 * 14 12 10 42 42 H 1.08999 * 109.47316 * 64.94552 * 16 15 12 43 43 H 1.08997 * 109.47411 * 184.94545 * 16 15 12 44 44 H 1.09006 * 109.46767 * 304.95001 * 16 15 12 45 45 H 1.08994 * 109.47150 * 289.99532 * 17 15 12 46 46 H 1.09000 * 109.46657 * 50.00043 * 17 15 12 47 47 H 0.96999 * 120.00275 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7171 1.9442 -0.9122 5 6 1.4827 2.1842 1.2190 6 6 2.1051 3.5806 1.2899 7 6 3.6219 3.4569 1.4513 8 6 4.2035 2.7299 0.2352 9 7 3.5074 1.4460 0.0745 10 6 4.2018 0.2935 -0.0035 11 8 3.6239 -0.7484 -0.2304 12 6 5.6961 0.2994 0.1910 13 1 6.1271 1.1539 -0.3310 14 6 6.0157 0.3996 1.6839 15 7 6.2652 -0.9423 -0.3495 16 6 6.0284 -1.0444 -1.7956 17 6 7.6984 -1.0419 -0.0424 18 6 8.1917 -2.4228 -0.3900 19 1 7.5089 -3.1534 -0.7978 20 6 9.5147 -2.7537 -0.1864 21 7 9.9454 -3.9585 -0.4902 22 14 10.6952 -1.4906 0.5209 23 1 10.6997 -1.5924 2.0024 24 1 12.0631 -1.7470 0.0029 25 1 10.2612 -0.1283 0.1197 26 1 -0.3633 0.5831 0.8463 27 1 -0.3634 0.4415 -0.9281 28 1 -0.3634 -1.0243 0.0818 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.7276 1.6303 2.1252 32 1 0.4001 2.2727 1.1274 33 1 1.8807 4.1252 0.3728 34 1 1.6918 4.1194 2.1426 35 1 4.0622 4.4514 1.5251 36 1 3.8466 2.8911 2.3554 37 1 5.2676 2.5517 0.3903 38 1 4.0612 3.3371 -0.6588 39 1 7.0916 0.5118 1.8184 40 1 5.5045 1.2639 2.1077 41 1 5.6788 -0.5057 2.1890 42 1 6.5667 -0.2477 -2.3090 43 1 6.3815 -2.0111 -2.1543 44 1 4.9612 -0.9498 -1.9965 45 1 8.2471 -0.3025 -0.6256 46 1 7.8559 -0.8565 1.0201 47 1 10.8761 -4.1913 -0.3474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:20 Heat of formation + Delta-G solvation = -39.940610 kcal Electronic energy + Delta-G solvation = -24100.355983 eV Core-core repulsion = 20896.789913 eV Total energy + Delta-G solvation = -3203.566070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.78191 -39.07307 -37.74409 -35.38268 -34.57569 -33.82016 -32.02166 -30.25239 -30.05502 -26.78311 -26.16704 -25.16672 -24.64964 -22.61298 -21.98205 -21.28000 -19.69011 -18.95871 -18.01121 -17.15305 -16.72847 -16.39887 -16.05806 -15.67336 -15.40265 -15.24228 -15.15072 -14.83973 -14.49706 -14.46210 -14.14220 -13.86214 -13.69910 -13.44545 -13.18494 -13.04882 -12.87905 -12.77018 -12.61555 -12.40031 -12.29478 -12.10774 -12.00082 -11.85875 -11.78840 -11.69591 -11.48019 -11.42151 -11.34800 -10.75911 -9.90811 -9.49547 -8.99182 -8.26574 -6.30876 1.35705 1.38751 1.48989 1.66984 1.95185 2.36178 3.05664 3.15937 3.49690 3.84584 3.86752 3.99628 4.06317 4.10754 4.14356 4.29055 4.31143 4.35029 4.42277 4.53422 4.56386 4.66114 4.68937 4.71885 4.75735 4.85977 4.91076 4.92567 4.98026 5.01879 5.10230 5.13610 5.15538 5.20025 5.23632 5.28817 5.35894 5.46633 5.51574 5.54276 5.80139 5.95471 6.25490 6.43574 6.66094 6.75130 7.31190 7.34039 8.90748 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026060 B = 0.004487 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.175631 B = 6239.321083 C = 6959.350148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C 0.146 3.854 4 H 0.079 0.921 5 C -0.127 4.127 6 C -0.116 4.116 7 C -0.132 4.132 8 C 0.095 3.905 9 N -0.609 5.609 10 C 0.520 3.480 11 O -0.548 6.548 12 C 0.059 3.941 13 H 0.071 0.929 14 C -0.136 4.136 15 N -0.535 5.535 16 C 0.049 3.951 17 C 0.173 3.827 18 C -0.520 4.520 19 H 0.028 0.972 20 C 0.005 3.995 21 N -0.951 5.951 22 Si 0.951 3.049 23 H -0.261 1.261 24 H -0.283 1.283 25 H -0.243 1.243 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.022 0.978 43 H 0.045 0.955 44 H 0.062 0.938 45 H -0.007 1.007 46 H 0.044 0.956 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.271 22.737 4.540 28.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C 0.044 3.956 4 H 0.097 0.903 5 C -0.165 4.165 6 C -0.154 4.154 7 C -0.170 4.170 8 C -0.027 4.027 9 N -0.344 5.344 10 C 0.307 3.693 11 O -0.425 6.425 12 C -0.053 4.053 13 H 0.088 0.912 14 C -0.194 4.194 15 N -0.260 5.260 16 C -0.099 4.099 17 C 0.046 3.954 18 C -0.558 4.558 19 H 0.046 0.954 20 C -0.192 4.192 21 N -0.592 5.592 22 Si 0.774 3.226 23 H -0.186 1.186 24 H -0.208 1.208 25 H -0.167 1.167 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.011 0.989 46 H 0.062 0.938 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.676 21.688 4.641 27.749 hybrid contribution 1.247 -0.036 -0.428 1.319 sum -15.429 21.652 4.213 26.919 Atomic orbital electron populations 1.21936 0.94758 1.01782 1.02525 1.21842 0.95466 0.95080 1.02303 1.21395 0.78258 0.96684 0.99248 0.90320 1.22026 1.01277 0.96489 0.96694 1.21524 0.94796 0.95831 1.03201 1.21927 0.96538 1.01467 0.97052 1.22091 0.97378 0.83321 0.99933 1.48261 1.06986 1.06542 1.72587 1.20632 0.89348 0.83438 0.75839 1.90719 1.70117 1.33451 1.48260 1.21752 0.92045 0.92605 0.98870 0.91176 1.21831 1.02943 1.02758 0.91862 1.61576 1.16258 1.34181 1.13943 1.22089 0.99960 1.00279 0.87583 1.20060 0.83883 0.94866 0.96576 1.21261 0.94700 0.97736 1.42119 0.95373 1.25926 1.00046 0.97589 0.95615 1.70071 1.16805 1.21921 1.50425 0.85661 0.77513 0.80080 0.79395 1.18617 1.20830 1.16651 0.91131 0.91927 0.93356 0.92422 0.94171 0.92859 0.89030 0.90769 0.90264 0.88377 0.92086 0.89346 0.89819 0.90905 0.88998 0.93223 0.95911 0.93594 0.91937 0.98915 0.93784 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.64 71.98 0.69 -2.25 16 2 C -0.11 -2.89 3.91 30.60 0.12 -2.77 16 3 C 0.15 3.04 3.05 44.98 0.14 3.18 16 4 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 5 C -0.13 -1.89 4.78 30.67 0.15 -1.75 16 6 C -0.12 -1.23 5.88 30.62 0.18 -1.05 16 7 C -0.13 -1.52 6.08 30.66 0.19 -1.33 16 8 C 0.09 1.51 5.74 86.35 0.50 2.00 16 9 N -0.61 -14.40 2.97 -795.09 -2.36 -16.76 16 10 C 0.52 17.10 5.97 87.66 0.52 17.62 16 11 O -0.55 -22.45 10.65 -3.03 -0.03 -22.48 16 12 C 0.06 1.99 1.62 44.17 0.07 2.06 16 13 H 0.07 2.07 6.68 -2.38 -0.02 2.05 16 14 C -0.14 -4.03 8.24 71.98 0.59 -3.43 16 15 N -0.53 -24.00 4.31 -906.03 -3.91 -27.90 16 16 C 0.05 2.15 9.02 127.69 1.15 3.30 16 17 C 0.17 8.40 3.49 85.56 0.30 8.70 16 18 C -0.52 -31.29 9.08 25.60 0.23 -31.05 16 19 H 0.03 1.93 7.35 -2.91 -0.02 1.91 16 20 C 0.01 0.30 5.47 84.66 0.46 0.76 16 21 N -0.95 -61.04 13.96 21.45 0.30 -60.75 16 22 Si 0.95 43.67 27.47 68.60 1.88 45.55 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 25 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 26 H 0.07 1.09 6.27 -2.39 -0.01 1.07 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.92 6.34 -2.39 -0.02 1.91 16 30 H 0.04 1.29 7.14 -2.39 -0.02 1.27 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.08 6.62 -2.39 -0.02 1.06 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.06 0.83 7.90 -2.39 -0.02 0.81 16 37 H 0.09 1.43 4.99 -2.38 -0.01 1.42 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 2.12 6.48 -2.38 -0.02 2.10 16 40 H 0.09 1.99 6.90 -2.39 -0.02 1.98 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 2.28 6.88 -2.39 -0.02 2.26 16 44 H 0.06 2.62 6.13 -2.38 -0.01 2.60 16 45 H -0.01 -0.32 7.18 -2.39 -0.02 -0.34 16 46 H 0.04 2.04 5.20 -2.39 -0.01 2.02 16 47 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -75.35 343.88 2.05 -73.30 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.88 Total: 15.04 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 5.29 Total: -6.00 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -5.97 Total: -105.41 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.03 Total: -22.48 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Total: -75.35 2.05 -73.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.359 kcal (2) G-P(sol) polarization free energy of solvation -75.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds