Wall clock time and date at job start Tue Mar 31 2020 05:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47353 * 2 1 4 4 H 1.08997 * 109.58231 * 59.98840 * 3 2 1 5 5 C 1.53191 * 109.70350 * 299.63093 * 3 2 1 6 6 C 1.53043 * 109.31064 * 185.50450 * 5 3 2 7 7 C 1.53041 * 109.53619 * 61.36902 * 6 5 3 8 8 C 1.53619 * 109.23934 * 298.51044 * 7 6 5 9 9 N 1.46920 * 108.54877 * 54.85671 * 8 7 6 10 10 C 1.34776 * 120.63509 * 126.36245 * 9 8 7 11 11 O 1.21279 * 120.00498 * 184.70240 * 10 9 8 12 12 C 1.50705 * 119.99558 * 4.71064 * 10 9 8 13 13 H 1.08996 * 109.47311 * 34.40695 * 12 10 9 14 14 C 1.52994 * 109.47132 * 274.40514 * 12 10 9 15 15 N 1.46908 * 109.46884 * 154.40706 * 12 10 9 16 16 C 1.46898 * 110.99601 * 299.74463 * 15 12 10 17 17 C 1.46899 * 110.99820 * 175.79562 * 15 12 10 18 18 C 1.50697 * 109.47262 * 189.99940 * 17 15 12 19 19 H 1.08007 * 119.99788 * 0.02562 * 18 17 15 20 20 C 1.37874 * 120.00220 * 179.97438 * 18 17 15 21 21 N 1.31517 * 119.99883 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99873 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47037 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47109 * 299.99682 * 22 20 18 25 25 H 1.48500 * 109.47287 * 59.99940 * 22 20 18 26 26 H 1.08996 * 109.47341 * 186.92238 * 1 2 3 27 27 H 1.08996 * 109.46964 * 306.92713 * 1 2 3 28 28 H 1.09001 * 109.46661 * 66.92148 * 1 2 3 29 29 H 1.09007 * 109.46969 * 240.00006 * 2 1 3 30 30 H 1.08998 * 109.47131 * 120.00438 * 2 1 3 31 31 H 1.08995 * 109.49795 * 305.46335 * 5 3 2 32 32 H 1.09003 * 109.49563 * 65.55706 * 5 3 2 33 33 H 1.09003 * 109.45858 * 181.39017 * 6 5 3 34 34 H 1.08996 * 109.46260 * 301.35900 * 6 5 3 35 35 H 1.09006 * 109.49467 * 58.58407 * 7 6 5 36 36 H 1.08995 * 109.49452 * 178.64766 * 7 6 5 37 37 H 1.09002 * 109.74284 * 295.11410 * 8 7 6 38 38 H 1.09009 * 109.66124 * 174.54876 * 8 7 6 39 39 H 1.08996 * 109.47301 * 52.61637 * 14 12 10 40 40 H 1.09002 * 109.47275 * 172.62238 * 14 12 10 41 41 H 1.09013 * 109.47122 * 292.61709 * 14 12 10 42 42 H 1.09003 * 109.47189 * 293.20949 * 16 15 12 43 43 H 1.08996 * 109.47308 * 53.21707 * 16 15 12 44 44 H 1.09006 * 109.46574 * 173.21598 * 16 15 12 45 45 H 1.09002 * 109.47677 * 69.99687 * 17 15 12 46 46 H 1.09002 * 109.46914 * 309.99674 * 17 15 12 47 47 H 0.96992 * 119.99970 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6776 1.9582 0.8892 5 6 1.5400 2.1672 -1.2536 6 6 2.1655 3.5626 -1.3149 7 6 3.6882 3.4374 -1.4045 8 6 4.2125 2.7277 -0.1470 9 7 3.5093 1.4454 -0.0065 10 6 4.1988 0.2943 0.1194 11 8 3.6097 -0.7654 0.1489 12 6 5.7020 0.3239 0.2239 13 1 6.0108 1.2155 0.7694 14 6 6.3103 0.3485 -1.1797 15 7 6.1668 -0.8727 0.9381 16 6 5.6064 -0.9268 2.2949 17 6 7.6344 -0.9285 0.9722 18 6 8.0741 -2.2744 1.4882 19 1 7.3370 -3.0145 1.7630 20 6 9.4172 -2.5613 1.6086 21 7 10.3148 -1.6607 1.2726 22 14 9.9622 -4.2294 2.2490 23 1 11.4458 -4.2864 2.2821 24 1 9.4278 -4.4322 3.6196 25 1 9.4463 -5.2960 1.3537 26 1 -0.3634 -1.0201 0.1239 27 1 -0.3633 0.6174 0.8215 28 1 -0.3633 0.4029 -0.9455 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8263 1.6008 -2.1398 32 1 0.4544 2.2565 -1.2134 33 1 1.7921 4.0896 -2.1930 34 1 1.8993 4.1197 -0.4167 35 1 3.9542 2.8591 -2.2893 36 1 4.1314 4.4309 -1.4723 37 1 4.0237 3.3461 0.7305 38 1 5.2831 2.5484 -0.2467 39 1 5.8658 1.1612 -1.7542 40 1 7.3870 0.5017 -1.1065 41 1 6.1115 -0.6002 -1.6786 42 1 6.0141 -0.1092 2.8893 43 1 4.5216 -0.8332 2.2439 44 1 5.8676 -1.8783 2.7582 45 1 8.0127 -0.1459 1.6299 46 1 8.0271 -0.7791 -0.0336 47 1 10.0318 -0.7944 0.9405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:24 Heat of formation + Delta-G solvation = -27.663309 kcal Electronic energy + Delta-G solvation = -24059.802534 eV Core-core repulsion = 20856.768848 eV Total energy + Delta-G solvation = -3203.033686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.64670 -37.82551 -36.32344 -34.30118 -32.97563 -32.68661 -30.52339 -29.46450 -27.14428 -25.58685 -24.39801 -24.29442 -23.27412 -21.54727 -21.16540 -20.22453 -18.45057 -17.09639 -16.44329 -16.02084 -15.59426 -14.89241 -14.64451 -14.43861 -14.33845 -13.89064 -13.72643 -13.61352 -13.43407 -13.14447 -12.85149 -12.54866 -12.18244 -11.94606 -11.89878 -11.73127 -11.67024 -11.32632 -11.18015 -11.12262 -11.07580 -10.89947 -10.79958 -10.65832 -10.59178 -10.57718 -10.22112 -10.03671 -8.80769 -8.54366 -8.44784 -8.33134 -7.29175 -6.34366 -4.02115 2.92007 3.00476 3.47860 3.50521 3.68669 4.44074 4.55307 4.58239 4.63081 4.79357 4.81966 4.93042 5.07493 5.11360 5.23616 5.33052 5.39346 5.41437 5.46385 5.50560 5.56559 5.57558 5.66758 5.69973 5.72969 5.80998 5.84742 5.90264 6.08030 6.08468 6.11020 6.19034 6.26952 6.37910 6.46111 6.54059 6.73802 6.78954 6.98068 7.08110 7.49424 7.78836 7.98426 8.30753 8.54790 8.62643 8.89967 9.67449 11.04905 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027704 B = 0.004179 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.441654 B = 6698.664282 C = 7390.611999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C 0.149 3.851 4 H 0.065 0.935 5 C -0.132 4.132 6 C -0.119 4.119 7 C -0.135 4.135 8 C 0.104 3.896 9 N -0.618 5.618 10 C 0.523 3.477 11 O -0.507 6.507 12 C 0.063 3.937 13 H 0.045 0.955 14 C -0.138 4.138 15 N -0.510 5.510 16 C 0.040 3.960 17 C 0.181 3.819 18 C -0.585 4.585 19 H 0.058 0.942 20 C 0.014 3.986 21 N -0.916 5.916 22 Si 1.072 2.928 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.287 1.287 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.007 0.993 43 H 0.051 0.949 44 H 0.076 0.924 45 H -0.021 1.021 46 H 0.029 0.971 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.863 12.573 -4.629 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.149 4.149 3 C 0.046 3.954 4 H 0.083 0.917 5 C -0.170 4.170 6 C -0.157 4.157 7 C -0.173 4.173 8 C -0.019 4.019 9 N -0.354 5.354 10 C 0.311 3.689 11 O -0.381 6.381 12 C -0.049 4.049 13 H 0.062 0.938 14 C -0.196 4.196 15 N -0.235 5.235 16 C -0.108 4.108 17 C 0.055 3.945 18 C -0.623 4.623 19 H 0.076 0.924 20 C -0.189 4.189 21 N -0.552 5.552 22 Si 0.900 3.100 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.213 1.213 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.026 0.974 43 H 0.069 0.931 44 H 0.095 0.905 45 H -0.004 1.004 46 H 0.047 0.953 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.995 10.640 -4.506 19.732 hybrid contribution -1.056 1.919 0.089 2.192 sum -17.051 12.559 -4.417 21.633 Atomic orbital electron populations 1.21988 0.97216 1.01542 1.00935 1.22063 0.93321 0.94120 1.05396 1.21300 0.79229 0.97721 0.97170 0.91698 1.22037 1.00336 0.96014 0.98608 1.21516 0.95264 0.96966 1.01931 1.21993 0.96203 1.00753 0.98354 1.21869 0.97609 0.84672 0.97759 1.48237 1.06091 1.06812 1.74263 1.20760 0.89752 0.83070 0.75288 1.90710 1.69298 1.30291 1.47824 1.21632 0.91005 0.94523 0.97732 0.93769 1.21802 1.01413 1.02422 0.93957 1.61903 1.11886 1.33766 1.15983 1.22227 0.97941 1.01321 0.89350 1.19966 0.80942 0.97304 0.96248 1.21970 0.94228 0.99544 1.46577 0.92403 1.25836 0.92808 1.04703 0.95552 1.70809 1.36246 1.06682 1.41512 0.83492 0.75970 0.74304 0.76198 1.20880 1.21497 1.21338 0.92652 0.93312 0.93171 0.90589 0.89586 0.91485 0.90860 0.91813 0.91921 0.91322 0.90797 0.91636 0.89244 0.92877 0.90994 0.90948 0.97434 0.93068 0.90521 1.00365 0.95305 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.37 37.16 0.35 -1.29 16 2 C -0.11 -1.49 3.86 -26.73 -0.10 -1.59 16 3 C 0.15 1.74 3.00 -67.60 -0.20 1.54 16 4 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 5 C -0.13 -1.23 4.87 -26.61 -0.13 -1.36 16 6 C -0.12 -0.94 5.88 -26.69 -0.16 -1.10 16 7 C -0.13 -1.14 6.10 -26.39 -0.16 -1.30 16 8 C 0.10 1.09 5.96 -3.49 -0.02 1.07 16 9 N -0.62 -8.24 2.97 -164.96 -0.49 -8.73 16 10 C 0.52 9.00 5.75 -10.98 -0.06 8.94 16 11 O -0.51 -10.16 10.88 5.56 0.06 -10.09 16 12 C 0.06 1.17 1.61 -68.86 -0.11 1.06 16 13 H 0.04 0.77 6.70 -51.93 -0.35 0.42 16 14 C -0.14 -2.33 8.26 37.15 0.31 -2.03 16 15 N -0.51 -11.69 4.33 -237.73 -1.03 -12.72 16 16 C 0.04 0.87 9.02 60.06 0.54 1.41 16 17 C 0.18 4.71 3.78 -4.98 -0.02 4.69 16 18 C -0.58 -16.94 8.55 -34.44 -0.29 -17.23 16 19 H 0.06 1.71 7.10 -52.48 -0.37 1.33 16 20 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 21 N -0.92 -27.91 13.65 55.43 0.76 -27.15 16 22 Si 1.07 25.76 29.90 -169.99 -5.08 20.68 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.46 6.98 -51.93 -0.36 0.09 16 29 H 0.08 1.18 7.02 -51.92 -0.36 0.82 16 30 H 0.09 1.38 6.46 -51.93 -0.34 1.05 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.59 6.94 -51.93 -0.36 0.23 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.98 4.95 -51.92 -0.26 0.72 16 39 H 0.05 0.71 7.29 -51.93 -0.38 0.34 16 40 H 0.07 1.26 6.57 -51.93 -0.34 0.92 16 41 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 42 H 0.01 0.15 8.11 -51.93 -0.42 -0.27 16 43 H 0.05 1.04 6.19 -51.93 -0.32 0.72 16 44 H 0.08 1.76 6.94 -51.93 -0.36 1.40 16 45 H -0.02 -0.58 7.97 -51.93 -0.41 -0.99 16 46 H 0.03 0.77 5.73 -51.93 -0.30 0.47 16 47 H 0.27 8.00 7.22 -40.82 -0.29 7.70 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -32.36 348.12 -8.95 -41.31 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.25 Total: -1.66 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -0.16 Total: -6.89 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.76 Total: -48.60 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.06 Total: -10.09 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.36 -8.95 -41.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.649 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds