Wall clock time and date at job start Tue Mar 31 2020 05:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47353 * 2 1 4 4 H 1.08997 * 109.58231 * 59.98840 * 3 2 1 5 5 C 1.53191 * 109.70350 * 299.63093 * 3 2 1 6 6 C 1.53043 * 109.31064 * 185.50450 * 5 3 2 7 7 C 1.53041 * 109.53619 * 61.36902 * 6 5 3 8 8 C 1.53619 * 109.23934 * 298.51044 * 7 6 5 9 9 N 1.46920 * 108.54877 * 54.85671 * 8 7 6 10 10 C 1.34776 * 120.63509 * 126.36245 * 9 8 7 11 11 O 1.21279 * 120.00498 * 184.70240 * 10 9 8 12 12 C 1.50705 * 119.99558 * 4.71064 * 10 9 8 13 13 H 1.08996 * 109.47311 * 34.40695 * 12 10 9 14 14 C 1.52994 * 109.47132 * 274.40514 * 12 10 9 15 15 N 1.46908 * 109.46884 * 154.40706 * 12 10 9 16 16 C 1.46898 * 110.99601 * 299.74463 * 15 12 10 17 17 C 1.46899 * 110.99820 * 175.79562 * 15 12 10 18 18 C 1.50697 * 109.47262 * 189.99940 * 17 15 12 19 19 H 1.08007 * 119.99788 * 0.02562 * 18 17 15 20 20 C 1.37874 * 120.00220 * 179.97438 * 18 17 15 21 21 N 1.31517 * 119.99883 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99873 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47037 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47109 * 299.99682 * 22 20 18 25 25 H 1.48500 * 109.47287 * 59.99940 * 22 20 18 26 26 H 1.08996 * 109.47341 * 186.92238 * 1 2 3 27 27 H 1.08996 * 109.46964 * 306.92713 * 1 2 3 28 28 H 1.09001 * 109.46661 * 66.92148 * 1 2 3 29 29 H 1.09007 * 109.46969 * 240.00006 * 2 1 3 30 30 H 1.08998 * 109.47131 * 120.00438 * 2 1 3 31 31 H 1.08995 * 109.49795 * 305.46335 * 5 3 2 32 32 H 1.09003 * 109.49563 * 65.55706 * 5 3 2 33 33 H 1.09003 * 109.45858 * 181.39017 * 6 5 3 34 34 H 1.08996 * 109.46260 * 301.35900 * 6 5 3 35 35 H 1.09006 * 109.49467 * 58.58407 * 7 6 5 36 36 H 1.08995 * 109.49452 * 178.64766 * 7 6 5 37 37 H 1.09002 * 109.74284 * 295.11410 * 8 7 6 38 38 H 1.09009 * 109.66124 * 174.54876 * 8 7 6 39 39 H 1.08996 * 109.47301 * 52.61637 * 14 12 10 40 40 H 1.09002 * 109.47275 * 172.62238 * 14 12 10 41 41 H 1.09013 * 109.47122 * 292.61709 * 14 12 10 42 42 H 1.09003 * 109.47189 * 293.20949 * 16 15 12 43 43 H 1.08996 * 109.47308 * 53.21707 * 16 15 12 44 44 H 1.09006 * 109.46574 * 173.21598 * 16 15 12 45 45 H 1.09002 * 109.47677 * 69.99687 * 17 15 12 46 46 H 1.09002 * 109.46914 * 309.99674 * 17 15 12 47 47 H 0.96992 * 119.99970 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6776 1.9582 0.8892 5 6 1.5400 2.1672 -1.2536 6 6 2.1655 3.5626 -1.3149 7 6 3.6882 3.4374 -1.4045 8 6 4.2125 2.7277 -0.1470 9 7 3.5093 1.4454 -0.0065 10 6 4.1988 0.2943 0.1194 11 8 3.6097 -0.7654 0.1489 12 6 5.7020 0.3239 0.2239 13 1 6.0108 1.2155 0.7694 14 6 6.3103 0.3485 -1.1797 15 7 6.1668 -0.8727 0.9381 16 6 5.6064 -0.9268 2.2949 17 6 7.6344 -0.9285 0.9722 18 6 8.0741 -2.2744 1.4882 19 1 7.3370 -3.0145 1.7630 20 6 9.4172 -2.5613 1.6086 21 7 10.3148 -1.6607 1.2726 22 14 9.9622 -4.2294 2.2490 23 1 11.4458 -4.2864 2.2821 24 1 9.4278 -4.4322 3.6196 25 1 9.4463 -5.2960 1.3537 26 1 -0.3634 -1.0201 0.1239 27 1 -0.3633 0.6174 0.8215 28 1 -0.3633 0.4029 -0.9455 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8263 1.6008 -2.1398 32 1 0.4544 2.2565 -1.2134 33 1 1.7921 4.0896 -2.1930 34 1 1.8993 4.1197 -0.4167 35 1 3.9542 2.8591 -2.2893 36 1 4.1314 4.4309 -1.4723 37 1 4.0237 3.3461 0.7305 38 1 5.2831 2.5484 -0.2467 39 1 5.8658 1.1612 -1.7542 40 1 7.3870 0.5017 -1.1065 41 1 6.1115 -0.6002 -1.6786 42 1 6.0141 -0.1092 2.8893 43 1 4.5216 -0.8332 2.2439 44 1 5.8676 -1.8783 2.7582 45 1 8.0127 -0.1459 1.6299 46 1 8.0271 -0.7791 -0.0336 47 1 10.0318 -0.7944 0.9405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:23 Heat of formation + Delta-G solvation = -48.239482 kcal Electronic energy + Delta-G solvation = -24060.694784 eV Core-core repulsion = 20856.768848 eV Total energy + Delta-G solvation = -3203.925936 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84820 -39.12849 -37.81606 -35.50458 -34.74738 -33.86529 -32.03857 -30.30849 -29.13582 -26.74882 -26.26517 -25.19456 -24.80740 -23.01166 -22.08312 -21.47201 -19.70913 -18.97621 -17.91329 -17.36279 -16.86690 -16.16903 -15.97388 -15.64946 -15.51325 -15.41459 -15.15689 -14.90933 -14.51540 -14.21875 -14.09248 -13.83667 -13.72431 -13.40748 -13.40122 -13.08879 -13.04975 -12.75562 -12.61097 -12.48465 -12.46055 -12.14625 -12.05767 -11.91289 -11.84977 -11.74366 -11.49388 -11.39818 -10.84611 -10.55821 -9.98420 -9.52684 -9.12149 -8.67747 -6.37213 1.52917 1.57973 1.61161 1.81170 1.88634 2.55376 3.08329 3.15867 3.42822 3.79302 3.82057 3.94481 3.97860 4.02404 4.08594 4.23658 4.25943 4.26502 4.40100 4.45104 4.52511 4.56223 4.61358 4.66744 4.69702 4.84227 4.86505 4.87296 4.89362 4.95905 5.04075 5.06291 5.08999 5.13770 5.19075 5.25837 5.32786 5.42427 5.47530 5.71900 5.77196 5.96520 6.24191 6.34901 6.43771 6.64438 7.24193 7.40753 8.71819 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027704 B = 0.004179 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.441654 B = 6698.664282 C = 7390.611999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 C 0.145 3.855 4 H 0.081 0.919 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.130 4.130 8 C 0.094 3.906 9 N -0.610 5.610 10 C 0.523 3.477 11 O -0.545 6.545 12 C 0.060 3.940 13 H 0.060 0.940 14 C -0.130 4.130 15 N -0.529 5.529 16 C 0.050 3.950 17 C 0.195 3.805 18 C -0.602 4.602 19 H 0.046 0.954 20 C -0.032 4.032 21 N -0.934 5.934 22 Si 1.118 2.882 23 H -0.279 1.279 24 H -0.271 1.271 25 H -0.274 1.274 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.013 0.987 43 H 0.062 0.938 44 H 0.055 0.945 45 H -0.039 1.039 46 H 0.021 0.979 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.405 14.394 -4.867 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C 0.042 3.958 4 H 0.099 0.901 5 C -0.164 4.164 6 C -0.153 4.153 7 C -0.169 4.169 8 C -0.028 4.028 9 N -0.344 5.344 10 C 0.310 3.690 11 O -0.422 6.422 12 C -0.052 4.052 13 H 0.077 0.923 14 C -0.187 4.187 15 N -0.254 5.254 16 C -0.098 4.098 17 C 0.069 3.931 18 C -0.640 4.640 19 H 0.065 0.935 20 C -0.230 4.230 21 N -0.572 5.572 22 Si 0.940 3.060 23 H -0.205 1.205 24 H -0.197 1.197 25 H -0.199 1.199 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.081 0.919 44 H 0.074 0.926 45 H -0.022 1.022 46 H 0.038 0.962 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.574 12.526 -4.756 22.099 hybrid contribution -0.646 1.433 0.144 1.579 sum -18.220 13.959 -4.613 23.412 Atomic orbital electron populations 1.21909 0.94666 1.01803 1.02485 1.21839 0.95450 0.94762 1.02281 1.21495 0.77967 0.96987 0.99303 0.90143 1.21999 1.01578 0.96465 0.96321 1.21527 0.94452 0.95973 1.03375 1.21989 0.96926 1.01444 0.96496 1.22162 0.97180 0.83529 0.99883 1.48272 1.07042 1.06640 1.72445 1.20488 0.89076 0.83783 0.75619 1.90722 1.69665 1.31918 1.49900 1.21742 0.92478 0.93085 0.97906 0.92291 1.21730 1.00934 1.02610 0.93472 1.61757 1.09852 1.36953 1.16883 1.22093 0.98479 1.00371 0.88881 1.19653 0.83075 0.95459 0.94944 1.22274 0.94420 1.00565 1.46762 0.93542 1.27294 0.93116 1.07540 0.95008 1.70926 1.36613 1.06803 1.42853 0.82910 0.75858 0.70532 0.76743 1.20460 1.19661 1.19950 0.93197 0.91724 0.91470 0.93557 0.93007 0.92940 0.88907 0.90122 0.90663 0.92286 0.88424 0.89791 0.89878 0.89167 0.92027 0.93219 0.96838 0.91914 0.92580 1.02155 0.96151 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.37 71.98 0.67 -2.21 16 2 C -0.11 -2.80 3.86 30.60 0.12 -2.68 16 3 C 0.14 3.12 3.00 44.98 0.13 3.25 16 4 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 5 C -0.13 -1.98 4.87 30.67 0.15 -1.83 16 6 C -0.12 -1.36 5.88 30.62 0.18 -1.18 16 7 C -0.13 -1.76 6.10 30.82 0.19 -1.58 16 8 C 0.09 1.74 5.96 86.51 0.52 2.25 16 9 N -0.61 -15.43 2.97 -794.20 -2.36 -17.79 16 10 C 0.52 18.05 5.75 87.66 0.50 18.56 16 11 O -0.54 -22.55 10.88 -3.02 -0.03 -22.59 16 12 C 0.06 2.22 1.61 44.17 0.07 2.29 16 13 H 0.06 2.03 6.70 -2.39 -0.02 2.01 16 14 C -0.13 -4.42 8.26 71.98 0.59 -3.82 16 15 N -0.53 -24.96 4.33 -906.03 -3.93 -28.88 16 16 C 0.05 2.22 9.02 127.69 1.15 3.37 16 17 C 0.19 10.49 3.78 85.56 0.32 10.82 16 18 C -0.60 -35.74 8.55 25.60 0.22 -35.52 16 19 H 0.05 2.81 7.10 -2.91 -0.02 2.79 16 20 C -0.03 -1.87 5.46 84.65 0.46 -1.41 16 21 N -0.93 -57.78 13.65 21.45 0.29 -57.48 16 22 Si 1.12 51.87 29.90 68.60 2.05 53.92 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.06 6.98 -2.39 -0.02 1.04 16 29 H 0.05 1.49 7.02 -2.38 -0.02 1.47 16 30 H 0.05 1.72 6.46 -2.39 -0.02 1.71 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.13 6.94 -2.39 -0.02 1.12 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.64 4.95 -2.38 -0.01 1.63 16 39 H 0.09 2.33 7.29 -2.39 -0.02 2.32 16 40 H 0.06 2.20 6.57 -2.39 -0.02 2.19 16 41 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.01 0.56 8.11 -2.39 -0.02 0.54 16 43 H 0.06 2.61 6.19 -2.39 -0.01 2.60 16 44 H 0.06 2.67 6.94 -2.38 -0.02 2.65 16 45 H -0.04 -2.20 7.97 -2.39 -0.02 -2.22 16 46 H 0.02 1.13 5.73 -2.39 -0.01 1.12 16 47 H 0.26 15.82 7.22 -92.71 -0.67 15.15 16 Total: -1.00 -72.27 348.12 2.34 -69.92 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.03 Total: 12.61 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.29 Total: -9.71 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -5.99 Total: -104.16 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.03 Total: -22.59 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.05 Total: 53.92 kcal Total: -72.27 2.34 -69.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.682 kcal (2) G-P(sol) polarization free energy of solvation -72.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds