Wall clock time and date at job start Tue Mar 31 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47498 * 2 1 4 4 H 1.09005 * 109.69769 * 297.81854 * 3 2 1 5 5 C 1.53196 * 109.58170 * 58.16810 * 3 2 1 6 6 C 1.53048 * 109.30648 * 174.42598 * 5 3 2 7 7 C 1.53040 * 109.52777 * 298.64076 * 6 5 3 8 8 C 1.53159 * 109.32444 * 61.37516 * 7 6 5 9 9 N 1.46916 * 109.59282 * 177.46173 * 3 2 1 10 10 C 1.34787 * 120.62665 * 6.62275 * 9 3 2 11 11 O 1.21271 * 120.00115 * 5.67168 * 10 9 3 12 12 C 1.50699 * 119.99584 * 185.66500 * 10 9 3 13 13 H 1.09000 * 109.47446 * 52.84577 * 12 10 9 14 14 C 1.53003 * 109.47377 * 292.84193 * 12 10 9 15 15 N 1.46897 * 109.46901 * 172.84273 * 12 10 9 16 16 C 1.46904 * 111.00265 * 66.04577 * 15 12 10 17 17 C 1.46898 * 111.00432 * 190.00005 * 15 12 10 18 18 C 1.50696 * 109.47699 * 170.00010 * 17 15 12 19 19 H 1.08003 * 119.99848 * 359.97438 * 18 17 15 20 20 C 1.37878 * 120.00477 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00263 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99551 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.46860 * 90.00395 * 22 20 18 24 24 H 1.48504 * 109.46974 * 210.00219 * 22 20 18 25 25 H 1.48494 * 109.47385 * 329.99915 * 22 20 18 26 26 H 1.08997 * 109.46939 * 304.51743 * 1 2 3 27 27 H 1.09000 * 109.47394 * 64.51957 * 1 2 3 28 28 H 1.08998 * 109.47092 * 184.52015 * 1 2 3 29 29 H 1.09002 * 109.46977 * 240.00396 * 2 1 3 30 30 H 1.08995 * 109.47521 * 120.00178 * 2 1 3 31 31 H 1.08998 * 109.49885 * 54.47821 * 5 3 2 32 32 H 1.08993 * 109.49936 * 294.37312 * 5 3 2 33 33 H 1.09000 * 109.46033 * 58.66285 * 6 5 3 34 34 H 1.09008 * 109.45280 * 178.63078 * 6 5 3 35 35 H 1.08997 * 109.49555 * 181.31185 * 7 6 5 36 36 H 1.08997 * 109.49641 * 301.41104 * 7 6 5 37 37 H 1.09006 * 109.59080 * 185.56939 * 8 7 6 38 38 H 1.09005 * 109.70806 * 65.21378 * 8 7 6 39 39 H 1.08996 * 109.47227 * 295.35718 * 14 12 10 40 40 H 1.09001 * 109.46847 * 55.36024 * 14 12 10 41 41 H 1.08997 * 109.46934 * 175.35588 * 14 12 10 42 42 H 1.09003 * 109.46491 * 60.00037 * 16 15 12 43 43 H 1.08996 * 109.47576 * 179.97438 * 16 15 12 44 44 H 1.09001 * 109.46917 * 300.00411 * 16 15 12 45 45 H 1.09004 * 109.47612 * 290.00328 * 17 15 12 46 46 H 1.09008 * 109.46766 * 49.99956 * 17 15 12 47 47 H 0.97000 * 120.00102 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7111 1.9485 -0.9077 5 6 1.4936 2.1804 1.2263 6 6 2.1165 3.5766 1.2960 7 6 3.6348 3.4525 1.4434 8 6 4.2054 2.7293 0.2199 9 7 3.5080 1.4460 0.0613 10 6 4.2016 0.2936 -0.0266 11 8 3.6229 -0.7462 -0.2603 12 6 5.6963 0.2975 0.1655 13 1 5.9404 0.7888 1.1073 14 6 6.3571 1.0523 -0.9898 15 7 6.1900 -1.0858 0.1925 16 6 6.0070 -1.7358 -1.1121 17 6 7.5970 -1.1345 0.6121 18 6 7.9965 -2.5654 0.8652 19 1 7.2771 -3.3592 0.7285 20 6 9.2802 -2.8611 1.2723 21 7 9.6287 -4.1097 1.4936 22 14 10.5244 -1.4880 1.5095 23 1 10.4592 -0.9974 2.9096 24 1 11.8888 -2.0023 1.2282 25 1 10.2143 -0.3728 0.5792 26 1 -0.3633 0.5823 0.8467 27 1 -0.3634 0.4421 -0.9277 28 1 -0.3633 -1.0245 0.0810 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.7466 1.6236 2.1285 32 1 0.4103 2.2690 1.1446 33 1 1.8838 4.1240 0.3826 34 1 1.7109 4.1127 2.1541 35 1 4.0756 4.4467 1.5164 36 1 3.8676 2.8838 2.3436 37 1 5.2709 2.5507 0.3649 38 1 4.0552 3.3394 -0.6709 39 1 6.1820 0.5153 -1.9220 40 1 5.9305 2.0528 -1.0612 41 1 7.4294 1.1266 -0.8091 42 1 6.5572 -1.1831 -1.8737 43 1 6.3812 -2.7584 -1.0643 44 1 4.9471 -1.7478 -1.3665 45 1 8.2254 -0.7155 -0.1738 46 1 7.7237 -0.5547 1.5265 47 1 10.5319 -4.3178 1.7797 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:27 Heat of formation + Delta-G solvation = -12.441236 kcal Electronic energy + Delta-G solvation = -24108.709557 eV Core-core repulsion = 20906.335950 eV Total energy + Delta-G solvation = -3202.373608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69043 -37.94142 -36.41407 -34.32357 -32.99711 -32.49578 -30.26971 -29.38867 -27.58139 -26.01440 -25.09783 -24.26374 -23.12309 -21.33599 -21.01779 -19.78254 -18.65011 -16.87880 -16.59047 -16.03942 -15.41869 -14.88042 -14.77008 -14.49691 -14.23146 -13.99127 -13.77876 -13.67197 -13.36750 -13.16030 -13.07974 -12.73003 -12.45300 -12.11113 -12.02232 -11.75974 -11.59528 -11.23725 -11.13542 -11.07330 -11.04016 -10.90404 -10.70716 -10.62339 -10.55022 -10.43293 -10.33734 -9.89756 -9.28196 -8.55237 -8.54323 -8.47453 -7.26277 -6.01840 -3.98796 2.92501 3.02239 3.28519 3.35838 3.36379 4.43152 4.45293 4.59401 4.65320 4.80497 4.83697 4.94356 5.08979 5.12750 5.23722 5.29369 5.34418 5.35329 5.38858 5.43231 5.55220 5.57039 5.66883 5.71197 5.75628 5.80857 5.86418 5.89627 5.94753 6.10949 6.12781 6.19484 6.32504 6.40797 6.45054 6.51308 6.80133 6.84839 6.94382 7.08389 7.50327 7.62648 7.95079 8.07099 8.55151 8.69686 9.09102 9.59316 11.11447 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023641 B = 0.004545 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.104958 B = 6158.697858 C = 6792.316273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 C 0.150 3.850 4 H 0.065 0.935 5 C -0.134 4.134 6 C -0.119 4.119 7 C -0.138 4.138 8 C 0.101 3.899 9 N -0.617 5.617 10 C 0.526 3.474 11 O -0.508 6.508 12 C 0.060 3.940 13 H 0.096 0.904 14 C -0.193 4.193 15 N -0.507 5.507 16 C 0.026 3.974 17 C 0.163 3.837 18 C -0.506 4.506 19 H 0.082 0.918 20 C 0.068 3.932 21 N -0.900 5.900 22 Si 0.874 3.126 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.268 1.268 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.010 0.990 43 H 0.076 0.924 44 H 0.073 0.927 45 H -0.009 1.009 46 H 0.021 0.979 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.893 18.458 -3.192 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.154 4.154 3 C 0.047 3.953 4 H 0.082 0.918 5 C -0.172 4.172 6 C -0.156 4.156 7 C -0.176 4.176 8 C -0.022 4.022 9 N -0.353 5.353 10 C 0.315 3.685 11 O -0.382 6.382 12 C -0.053 4.053 13 H 0.114 0.886 14 C -0.252 4.252 15 N -0.230 5.230 16 C -0.122 4.122 17 C 0.037 3.963 18 C -0.545 4.545 19 H 0.100 0.900 20 C -0.133 4.133 21 N -0.539 5.539 22 Si 0.701 3.299 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.193 1.193 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.028 0.972 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.009 0.991 46 H 0.039 0.961 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.308 17.476 -2.914 23.414 hybrid contribution 1.359 1.313 -0.264 1.908 sum -13.949 18.789 -3.178 23.616 Atomic orbital electron populations 1.22001 0.97159 1.01614 1.00965 1.22084 0.93465 0.94227 1.05605 1.21242 0.79153 0.97685 0.97170 0.91752 1.22070 1.00222 0.95978 0.98915 1.21514 0.95327 0.96964 1.01835 1.21947 0.96136 1.00727 0.98801 1.21935 0.97779 0.84659 0.97827 1.48186 1.06163 1.06575 1.74342 1.20728 0.89560 0.82674 0.75565 1.90645 1.69602 1.31613 1.46375 1.21687 0.91117 0.93190 0.99258 0.88618 1.22659 1.02137 1.00363 1.00050 1.61920 1.21983 1.10326 1.28750 1.22516 1.01246 1.00153 0.88317 1.20223 0.83098 0.98749 0.94280 1.21035 0.97178 0.91310 1.44940 0.90000 1.24892 0.98009 0.95255 0.95173 1.69894 1.19379 1.17528 1.47145 0.86883 0.81154 0.82927 0.78908 1.20179 1.21216 1.19325 0.93043 0.93347 0.92649 0.88867 0.90969 0.91378 0.90772 0.91992 0.91849 0.90860 0.91207 0.88746 0.91609 0.91415 0.91832 0.91273 0.97195 0.90492 0.90822 0.99136 0.96093 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.65 37.16 0.36 -1.28 16 2 C -0.12 -1.52 3.90 -26.73 -0.10 -1.62 16 3 C 0.15 1.70 3.04 -67.60 -0.21 1.49 16 4 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.13 -1.24 4.79 -26.61 -0.13 -1.37 16 6 C -0.12 -0.92 5.88 -26.69 -0.16 -1.08 16 7 C -0.14 -1.13 6.08 -26.63 -0.16 -1.30 16 8 C 0.10 0.97 5.07 -3.73 -0.02 0.95 16 9 N -0.62 -7.76 2.97 -165.24 -0.49 -8.25 16 10 C 0.53 8.61 6.71 -10.98 -0.07 8.53 16 11 O -0.51 -9.72 9.57 5.56 0.05 -9.67 16 12 C 0.06 1.03 1.90 -68.87 -0.13 0.90 16 13 H 0.10 1.56 7.37 -51.93 -0.38 1.18 16 14 C -0.19 -2.80 8.02 37.16 0.30 -2.50 16 15 N -0.51 -11.11 4.49 -237.73 -1.07 -12.18 16 16 C 0.03 0.54 8.49 60.07 0.51 1.05 16 17 C 0.16 3.97 3.36 -4.98 -0.02 3.95 16 18 C -0.51 -14.68 9.01 -34.44 -0.31 -14.99 16 19 H 0.08 2.62 7.37 -52.48 -0.39 2.23 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 22 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 26 H 0.05 0.46 6.29 -51.93 -0.33 0.14 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.44 6.29 -51.93 -0.33 1.11 16 30 H 0.07 1.13 7.19 -51.93 -0.37 0.76 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.59 6.63 -51.93 -0.34 0.25 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.92 4.48 -51.93 -0.23 0.69 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 1.04 6.05 -51.93 -0.31 0.72 16 40 H 0.06 0.71 5.27 -51.93 -0.27 0.44 16 41 H 0.07 1.05 7.13 -51.93 -0.37 0.68 16 42 H 0.01 0.19 6.11 -51.93 -0.32 -0.13 16 43 H 0.08 1.80 6.76 -51.93 -0.35 1.45 16 44 H 0.07 1.51 5.63 -51.93 -0.29 1.22 16 45 H -0.01 -0.22 6.23 -51.93 -0.32 -0.54 16 46 H 0.02 0.51 7.36 -51.92 -0.38 0.12 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -32.15 338.36 -8.51 -40.66 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.97 Total: 0.08 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -0.24 Total: -5.36 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.79 Total: -47.58 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.05 Total: -9.67 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.15 -8.51 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.217 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds