Wall clock time and date at job start Tue Mar 31 2020 05:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47498 * 2 1 4 4 H 1.09005 * 109.69769 * 297.81854 * 3 2 1 5 5 C 1.53196 * 109.58170 * 58.16810 * 3 2 1 6 6 C 1.53048 * 109.30648 * 174.42598 * 5 3 2 7 7 C 1.53040 * 109.52777 * 298.64076 * 6 5 3 8 8 C 1.53159 * 109.32444 * 61.37516 * 7 6 5 9 9 N 1.46916 * 109.59282 * 177.46173 * 3 2 1 10 10 C 1.34787 * 120.62665 * 6.62275 * 9 3 2 11 11 O 1.21271 * 120.00115 * 5.67168 * 10 9 3 12 12 C 1.50699 * 119.99584 * 185.66500 * 10 9 3 13 13 H 1.09000 * 109.47446 * 52.84577 * 12 10 9 14 14 C 1.53003 * 109.47377 * 292.84193 * 12 10 9 15 15 N 1.46897 * 109.46901 * 172.84273 * 12 10 9 16 16 C 1.46904 * 111.00265 * 66.04577 * 15 12 10 17 17 C 1.46898 * 111.00432 * 190.00005 * 15 12 10 18 18 C 1.50696 * 109.47699 * 170.00010 * 17 15 12 19 19 H 1.08003 * 119.99848 * 359.97438 * 18 17 15 20 20 C 1.37878 * 120.00477 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00263 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99551 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.46860 * 90.00395 * 22 20 18 24 24 H 1.48504 * 109.46974 * 210.00219 * 22 20 18 25 25 H 1.48494 * 109.47385 * 329.99915 * 22 20 18 26 26 H 1.08997 * 109.46939 * 304.51743 * 1 2 3 27 27 H 1.09000 * 109.47394 * 64.51957 * 1 2 3 28 28 H 1.08998 * 109.47092 * 184.52015 * 1 2 3 29 29 H 1.09002 * 109.46977 * 240.00396 * 2 1 3 30 30 H 1.08995 * 109.47521 * 120.00178 * 2 1 3 31 31 H 1.08998 * 109.49885 * 54.47821 * 5 3 2 32 32 H 1.08993 * 109.49936 * 294.37312 * 5 3 2 33 33 H 1.09000 * 109.46033 * 58.66285 * 6 5 3 34 34 H 1.09008 * 109.45280 * 178.63078 * 6 5 3 35 35 H 1.08997 * 109.49555 * 181.31185 * 7 6 5 36 36 H 1.08997 * 109.49641 * 301.41104 * 7 6 5 37 37 H 1.09006 * 109.59080 * 185.56939 * 8 7 6 38 38 H 1.09005 * 109.70806 * 65.21378 * 8 7 6 39 39 H 1.08996 * 109.47227 * 295.35718 * 14 12 10 40 40 H 1.09001 * 109.46847 * 55.36024 * 14 12 10 41 41 H 1.08997 * 109.46934 * 175.35588 * 14 12 10 42 42 H 1.09003 * 109.46491 * 60.00037 * 16 15 12 43 43 H 1.08996 * 109.47576 * 179.97438 * 16 15 12 44 44 H 1.09001 * 109.46917 * 300.00411 * 16 15 12 45 45 H 1.09004 * 109.47612 * 290.00328 * 17 15 12 46 46 H 1.09008 * 109.46766 * 49.99956 * 17 15 12 47 47 H 0.97000 * 120.00102 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7111 1.9485 -0.9077 5 6 1.4936 2.1804 1.2263 6 6 2.1165 3.5766 1.2960 7 6 3.6348 3.4525 1.4434 8 6 4.2054 2.7293 0.2199 9 7 3.5080 1.4460 0.0613 10 6 4.2016 0.2936 -0.0266 11 8 3.6229 -0.7462 -0.2603 12 6 5.6963 0.2975 0.1655 13 1 5.9404 0.7888 1.1073 14 6 6.3571 1.0523 -0.9898 15 7 6.1900 -1.0858 0.1925 16 6 6.0070 -1.7358 -1.1121 17 6 7.5970 -1.1345 0.6121 18 6 7.9965 -2.5654 0.8652 19 1 7.2771 -3.3592 0.7285 20 6 9.2802 -2.8611 1.2723 21 7 9.6287 -4.1097 1.4936 22 14 10.5244 -1.4880 1.5095 23 1 10.4592 -0.9974 2.9096 24 1 11.8888 -2.0023 1.2282 25 1 10.2143 -0.3728 0.5792 26 1 -0.3633 0.5823 0.8467 27 1 -0.3634 0.4421 -0.9277 28 1 -0.3633 -1.0245 0.0810 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.7466 1.6236 2.1285 32 1 0.4103 2.2690 1.1446 33 1 1.8838 4.1240 0.3826 34 1 1.7109 4.1127 2.1541 35 1 4.0756 4.4467 1.5164 36 1 3.8676 2.8838 2.3436 37 1 5.2709 2.5507 0.3649 38 1 4.0552 3.3394 -0.6709 39 1 6.1820 0.5153 -1.9220 40 1 5.9305 2.0528 -1.0612 41 1 7.4294 1.1266 -0.8091 42 1 6.5572 -1.1831 -1.8737 43 1 6.3812 -2.7584 -1.0643 44 1 4.9471 -1.7478 -1.3665 45 1 8.2254 -0.7155 -0.1738 46 1 7.7237 -0.5547 1.5265 47 1 10.5319 -4.3178 1.7797 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:26 Heat of formation + Delta-G solvation = -34.354834 kcal Electronic energy + Delta-G solvation = -24109.659802 eV Core-core repulsion = 20906.335950 eV Total energy + Delta-G solvation = -3203.323852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.81758 -39.17192 -37.76798 -35.42576 -34.60850 -33.86365 -31.73454 -30.25547 -29.47950 -27.26812 -26.51879 -25.07413 -24.60232 -22.56993 -21.98051 -21.11164 -19.84741 -18.97207 -17.79163 -17.16147 -16.66529 -16.35270 -15.86969 -15.71751 -15.55240 -15.28565 -15.22358 -14.64394 -14.55272 -14.39320 -14.38251 -14.06456 -13.59791 -13.43272 -13.17141 -13.01193 -12.81946 -12.73984 -12.52829 -12.40030 -12.26747 -12.13476 -11.91977 -11.83464 -11.77702 -11.61684 -11.50503 -11.44638 -11.31685 -10.77521 -9.83971 -9.48079 -8.92713 -8.27100 -6.31602 1.35266 1.38337 1.48720 1.69438 1.98115 2.35732 3.05541 3.24654 3.51700 3.86367 3.87194 3.99458 4.06408 4.10057 4.14593 4.29391 4.31537 4.42802 4.50578 4.53225 4.57103 4.60510 4.71704 4.74581 4.76903 4.85801 4.88203 4.91614 4.99977 5.05069 5.10418 5.16876 5.20025 5.23443 5.25870 5.29766 5.36457 5.48356 5.51933 5.52331 5.82341 5.96905 6.30282 6.45105 6.68342 6.74776 7.31142 7.35314 8.90196 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023641 B = 0.004545 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.104958 B = 6158.697858 C = 6792.316273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C 0.148 3.852 4 H 0.084 0.916 5 C -0.129 4.129 6 C -0.115 4.115 7 C -0.135 4.135 8 C 0.091 3.909 9 N -0.609 5.609 10 C 0.521 3.479 11 O -0.549 6.549 12 C 0.058 3.942 13 H 0.106 0.894 14 C -0.184 4.184 15 N -0.534 5.534 16 C 0.040 3.960 17 C 0.177 3.823 18 C -0.521 4.521 19 H 0.028 0.972 20 C 0.005 3.995 21 N -0.951 5.951 22 Si 0.953 3.047 23 H -0.263 1.263 24 H -0.283 1.283 25 H -0.243 1.243 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.027 0.973 43 H 0.038 0.962 44 H 0.076 0.924 45 H -0.001 1.001 46 H 0.031 0.969 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.161 23.312 -3.416 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C 0.046 3.954 4 H 0.102 0.898 5 C -0.167 4.167 6 C -0.153 4.153 7 C -0.173 4.173 8 C -0.030 4.030 9 N -0.343 5.343 10 C 0.309 3.691 11 O -0.427 6.427 12 C -0.055 4.055 13 H 0.124 0.876 14 C -0.242 4.242 15 N -0.257 5.257 16 C -0.108 4.108 17 C 0.050 3.950 18 C -0.559 4.559 19 H 0.046 0.954 20 C -0.192 4.192 21 N -0.592 5.592 22 Si 0.775 3.225 23 H -0.188 1.188 24 H -0.208 1.208 25 H -0.166 1.166 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.017 0.983 46 H 0.049 0.951 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.611 22.389 -3.141 27.474 hybrid contribution 1.312 -0.262 -0.187 1.351 sum -14.299 22.127 -3.328 26.555 Atomic orbital electron populations 1.21929 0.94819 1.01721 1.02514 1.21862 0.95442 0.95156 1.02365 1.21389 0.78298 0.96619 0.99138 0.89846 1.22037 1.01369 0.96585 0.96698 1.21522 0.94723 0.95784 1.03258 1.21945 0.96691 1.01517 0.97180 1.22251 0.97626 0.83350 0.99781 1.48221 1.06872 1.06604 1.72625 1.20650 0.89345 0.83327 0.75740 1.90656 1.70114 1.33352 1.48531 1.21777 0.91989 0.90603 1.01084 0.87582 1.22585 1.01810 1.01856 0.97981 1.61708 1.20609 1.14122 1.29288 1.22304 1.01372 0.98281 0.88856 1.19947 0.84732 0.95513 0.94832 1.21271 0.96665 0.92750 1.45193 0.95388 1.25936 1.00456 0.98348 0.94462 1.70075 1.20261 1.20455 1.48430 0.85634 0.77446 0.79494 0.79883 1.18789 1.20820 1.16633 0.91401 0.91691 0.93423 0.91854 0.94615 0.93408 0.89009 0.90355 0.90570 0.88305 0.92899 0.88730 0.89007 0.92426 0.87975 0.91547 0.95489 0.94262 0.90543 0.98326 0.95072 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.65 71.98 0.69 -2.28 16 2 C -0.11 -2.93 3.90 30.59 0.12 -2.81 16 3 C 0.15 3.06 3.04 44.98 0.14 3.20 16 4 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 5 C -0.13 -2.05 4.79 30.68 0.15 -1.90 16 6 C -0.12 -1.31 5.88 30.62 0.18 -1.13 16 7 C -0.14 -1.71 6.08 30.66 0.19 -1.52 16 8 C 0.09 1.41 5.07 86.35 0.44 1.84 16 9 N -0.61 -14.20 2.97 -795.09 -2.36 -16.57 16 10 C 0.52 16.93 6.71 87.65 0.59 17.52 16 11 O -0.55 -21.94 9.57 -3.00 -0.03 -21.97 16 12 C 0.06 1.91 1.90 44.17 0.08 2.00 16 13 H 0.11 3.27 7.37 -2.39 -0.02 3.25 16 14 C -0.18 -4.85 8.02 71.98 0.58 -4.27 16 15 N -0.53 -23.89 4.49 -906.03 -4.07 -27.96 16 16 C 0.04 1.76 8.49 127.69 1.08 2.84 16 17 C 0.18 8.61 3.36 85.56 0.29 8.90 16 18 C -0.52 -31.43 9.01 25.60 0.23 -31.20 16 19 H 0.03 1.93 7.37 -2.91 -0.02 1.91 16 20 C 0.00 0.28 5.47 84.66 0.46 0.75 16 21 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 22 Si 0.95 43.89 27.47 68.60 1.88 45.78 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 26 H 0.07 1.10 6.29 -2.39 -0.02 1.08 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 2.06 6.29 -2.39 -0.02 2.04 16 30 H 0.04 1.19 7.19 -2.39 -0.02 1.17 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.15 6.63 -2.39 -0.02 1.14 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 1.46 4.48 -2.38 -0.01 1.45 16 38 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.06 1.65 6.05 -2.39 -0.01 1.63 16 40 H 0.10 1.88 5.27 -2.39 -0.01 1.87 16 41 H 0.07 1.81 7.13 -2.39 -0.02 1.79 16 42 H 0.03 1.07 6.11 -2.39 -0.01 1.06 16 43 H 0.04 1.97 6.76 -2.39 -0.02 1.96 16 44 H 0.08 3.32 5.63 -2.39 -0.01 3.30 16 45 H 0.00 -0.04 6.23 -2.39 -0.01 -0.06 16 46 H 0.03 1.46 7.36 -2.38 -0.02 1.44 16 47 H 0.27 15.90 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -75.30 338.36 1.82 -73.47 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.89 Total: 16.20 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 5.22 Total: -8.07 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -6.14 Total: -105.41 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.03 Total: -21.97 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.78 kcal Total: -75.30 1.82 -73.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.120 kcal (2) G-P(sol) polarization free energy of solvation -75.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds