Wall clock time and date at job start Tue Mar 31 2020 05:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46943 * 2 1 4 4 H 1.09000 * 109.50535 * 304.92522 * 3 2 1 5 5 C 1.53126 * 109.50332 * 65.00410 * 3 2 1 6 6 C 1.53117 * 109.15908 * 177.59277 * 5 3 2 7 7 C 1.53038 * 109.28007 * 302.34251 * 6 5 3 8 8 N 1.46848 * 109.52103 * 59.18312 * 7 6 5 9 9 C 1.46900 * 110.99689 * 174.16515 * 8 7 6 10 10 C 1.50693 * 109.47564 * 66.04312 * 9 8 7 11 11 O 1.21279 * 120.00093 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00154 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99743 * 0.02562 * 12 10 9 14 14 C 1.52997 * 109.47473 * 90.00017 * 13 12 10 15 15 C 1.46500 * 120.00142 * 180.02562 * 12 10 9 16 16 C 1.50701 * 109.46973 * 269.99857 * 15 12 10 17 17 H 1.08006 * 119.99964 * 359.97438 * 16 15 12 18 18 C 1.37870 * 120.00144 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00230 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 120.00235 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46971 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47018 * 119.99874 * 20 18 16 23 23 H 1.48495 * 109.46985 * 240.00041 * 20 18 16 24 24 C 1.46846 * 111.19497 * 298.25425 * 8 7 6 25 25 H 1.09004 * 109.47006 * 59.99812 * 1 2 3 26 26 H 1.08996 * 109.47189 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47223 * 299.99786 * 1 2 3 28 28 H 1.09002 * 109.46826 * 240.00483 * 2 1 3 29 29 H 1.08995 * 109.46858 * 120.00378 * 2 1 3 30 30 H 1.08998 * 109.52403 * 57.68578 * 5 3 2 31 31 H 1.09002 * 109.51651 * 297.49957 * 5 3 2 32 32 H 1.09000 * 109.49659 * 182.40238 * 6 5 3 33 33 H 1.09002 * 109.53548 * 62.30743 * 6 5 3 34 34 H 1.08994 * 109.45937 * 299.16448 * 7 6 5 35 35 H 1.08994 * 109.45757 * 179.19844 * 7 6 5 36 36 H 1.09001 * 109.46881 * 306.03695 * 9 8 7 37 37 H 1.09002 * 109.46962 * 186.05016 * 9 8 7 38 38 H 1.09002 * 109.47129 * 329.99760 * 13 12 10 39 39 H 1.08998 * 109.46845 * 210.00566 * 13 12 10 40 40 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 41 41 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 42 42 H 1.09004 * 109.47261 * 179.97438 * 14 13 12 43 43 H 1.08992 * 109.46978 * 29.99627 * 15 12 10 44 44 H 1.08993 * 109.47313 * 150.00156 * 15 12 10 45 45 H 0.96999 * 120.00362 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.46295 * 181.75913 * 24 8 7 47 47 H 1.08997 * 109.46750 * 301.72992 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9817 -0.8424 5 6 1.6353 2.1278 1.3082 6 6 2.2007 3.5507 1.3259 7 6 3.7216 3.4921 1.1667 8 7 4.0572 2.8287 -0.0996 9 6 5.5036 2.8773 -0.3522 10 6 6.2227 2.0543 0.6854 11 8 5.5925 1.4838 1.5504 12 7 7.5663 1.9531 0.6526 13 6 8.3276 2.6436 -0.3913 14 6 8.7009 4.0461 0.0928 15 6 8.2653 1.1525 1.6610 16 6 8.6116 2.0228 2.8416 17 1 8.3387 3.0678 2.8407 18 6 9.2778 1.4853 3.9224 19 7 9.6106 0.2129 3.9233 20 14 9.7077 2.5642 5.3855 21 1 9.2270 3.9474 5.1388 22 1 9.0577 2.0242 6.6066 23 1 11.1806 2.5787 5.5740 24 6 3.5656 1.4451 -0.1207 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.0354 1.5663 2.1525 31 1 0.5482 2.1668 1.3778 32 1 1.9521 4.0291 2.2732 33 1 1.7706 4.1240 0.5047 34 1 4.1522 2.9310 1.9960 35 1 4.1257 4.5044 1.1646 36 1 5.8472 3.9103 -0.2987 37 1 5.7130 2.4757 -1.3437 38 1 7.7205 2.7201 -1.2933 39 1 9.2352 2.0814 -0.6110 40 1 9.3080 3.9695 0.9949 41 1 7.7932 4.6082 0.3125 42 1 9.2678 4.5597 -0.6837 43 1 7.6209 0.3365 1.9877 44 1 9.1794 0.7437 1.2306 45 1 10.0790 -0.1654 4.6838 46 1 3.8565 0.9705 -1.0579 47 1 3.9970 0.8935 0.7146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079964623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:07 Heat of formation + Delta-G solvation = -49.017344 kcal Electronic energy + Delta-G solvation = -23826.338699 eV Core-core repulsion = 20622.379032 eV Total energy + Delta-G solvation = -3203.959667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.97753 -38.10824 -35.47709 -34.54837 -32.79704 -32.12761 -29.99194 -29.34896 -28.09699 -26.26615 -24.05717 -23.12590 -22.76285 -22.24633 -20.76607 -19.51288 -18.33442 -16.61261 -16.40874 -15.87015 -15.12897 -14.98657 -14.80074 -14.35701 -14.17411 -14.02796 -13.63982 -13.27842 -13.21123 -12.98341 -12.46010 -12.37108 -12.21226 -12.08022 -11.99086 -11.47862 -11.39258 -11.21471 -11.18577 -10.94911 -10.90946 -10.71943 -10.58224 -10.49660 -10.38795 -10.07021 -10.05325 -9.96549 -9.60359 -9.49616 -8.44678 -7.71404 -7.59175 -6.05461 -4.09485 3.27700 3.33508 3.36467 3.41133 3.97815 4.15130 4.43398 4.85760 4.93215 5.01715 5.13559 5.25986 5.29908 5.33881 5.34924 5.40575 5.47250 5.67770 5.71240 5.75108 5.77042 5.81006 5.82018 5.85104 5.96343 6.00244 6.09524 6.12216 6.15004 6.21120 6.24147 6.30116 6.35787 6.45221 6.50759 6.72189 6.75508 7.03009 7.25084 7.33784 7.43584 7.56324 7.91147 8.23192 8.41840 8.89621 9.08080 9.55460 11.02742 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018505 B = 0.004603 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.710440 B = 6081.250536 C = 6519.028603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.079 4.079 4 H 0.069 0.931 5 C -0.115 4.115 6 C -0.111 4.111 7 C 0.040 3.960 8 N -0.515 5.515 9 C 0.033 3.967 10 C 0.475 3.525 11 O -0.539 6.539 12 N -0.596 5.596 13 C 0.110 3.890 14 C -0.169 4.169 15 C 0.245 3.755 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.036 3.964 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.060 0.940 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.933 4.882 -10.890 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.098 4.098 4 H 0.088 0.912 5 C -0.152 4.152 6 C -0.149 4.149 7 C -0.088 4.088 8 N -0.238 5.238 9 C -0.099 4.099 10 C 0.261 3.739 11 O -0.418 6.418 12 N -0.328 5.328 13 C -0.014 4.014 14 C -0.227 4.227 15 C 0.125 3.875 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.091 4.091 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.395 4.694 -10.702 17.035 hybrid contribution 0.948 0.194 1.471 1.761 sum -11.446 4.888 -9.232 15.496 Atomic orbital electron populations 1.21790 0.96106 1.01168 1.01679 1.21525 0.95541 0.96598 1.02091 1.21143 0.95292 0.95331 0.97994 0.91235 1.21649 0.99728 0.96066 0.97803 1.21523 0.95339 0.96945 1.01126 1.22242 0.95793 0.98668 0.92070 1.62431 1.10447 1.17174 1.33743 1.22323 0.88266 1.00923 0.98387 1.21643 0.83019 0.82540 0.86740 1.90553 1.65274 1.47771 1.38220 1.48436 1.05734 1.48951 1.29692 1.21394 0.96544 0.93597 0.89851 1.22218 1.01670 0.96370 1.02482 1.19271 0.91730 0.91030 0.85459 1.21460 1.36425 0.96300 1.01701 0.92368 1.24934 0.95865 0.95027 0.98316 1.69941 1.40494 1.11885 1.31142 0.86489 0.77890 0.80634 0.82700 1.19836 1.20925 1.20985 1.22479 0.94434 0.89648 1.02563 0.92995 0.93128 0.92600 0.92183 0.91858 0.91929 0.92273 0.92003 0.91882 0.91569 0.91817 0.88534 0.88691 0.91931 0.90770 0.90649 0.93311 0.92759 0.94076 0.95253 0.92834 0.92126 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.12 -1.38 5.41 -26.73 -0.14 -1.52 16 3 C -0.08 -1.01 2.35 -90.53 -0.21 -1.22 16 4 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 5 C -0.11 -1.47 4.98 -26.61 -0.13 -1.60 16 6 C -0.11 -1.45 6.09 -26.65 -0.16 -1.61 16 7 C 0.04 0.63 5.09 -3.83 -0.02 0.61 16 8 N -0.52 -7.86 4.86 -236.12 -1.15 -9.01 16 9 C 0.03 0.50 4.41 -4.98 -0.02 0.48 16 10 C 0.47 9.54 7.09 -10.99 -0.08 9.46 16 11 O -0.54 -12.84 11.20 5.56 0.06 -12.77 16 12 N -0.60 -12.30 2.46 -175.07 -0.43 -12.73 16 13 C 0.11 1.74 5.97 -4.04 -0.02 1.71 16 14 C -0.17 -2.55 10.24 37.16 0.38 -2.17 16 15 C 0.24 6.32 5.20 -5.19 -0.03 6.29 16 16 C -0.52 -14.50 8.92 -34.44 -0.31 -14.81 16 17 H 0.06 1.63 7.42 -52.48 -0.39 1.24 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.04 0.55 4.26 -3.83 -0.02 0.54 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.53 6.62 -51.93 -0.34 0.19 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.65 6.70 -51.93 -0.35 0.31 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.28 6.00 -51.93 -0.31 0.97 16 35 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 36 H 0.10 1.35 7.11 -51.93 -0.37 0.98 16 37 H 0.10 1.25 7.40 -51.93 -0.38 0.87 16 38 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 39 H 0.07 1.15 7.89 -51.93 -0.41 0.74 16 40 H 0.07 1.37 7.26 -51.93 -0.38 0.99 16 41 H 0.05 0.72 7.22 -51.93 -0.38 0.34 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 44 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 47 H 0.08 1.54 5.36 -51.93 -0.28 1.26 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -31.12 356.32 -9.43 -40.55 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.50 Total: 0.93 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -0.50 Total: -3.31 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.84 Total: -47.58 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.06 Total: -12.77 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.12 -9.43 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079964623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.468 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds