Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46943 * 2 1 4 4 H 1.09000 * 109.50535 * 304.92522 * 3 2 1 5 5 C 1.53126 * 109.50332 * 65.00410 * 3 2 1 6 6 C 1.53117 * 109.15908 * 177.59277 * 5 3 2 7 7 C 1.53038 * 109.28007 * 302.34251 * 6 5 3 8 8 N 1.46848 * 109.52103 * 59.18312 * 7 6 5 9 9 C 1.46900 * 110.99689 * 174.16515 * 8 7 6 10 10 C 1.50693 * 109.47564 * 66.04312 * 9 8 7 11 11 O 1.21279 * 120.00093 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00154 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99743 * 0.02562 * 12 10 9 14 14 C 1.52997 * 109.47473 * 90.00017 * 13 12 10 15 15 C 1.46500 * 120.00142 * 180.02562 * 12 10 9 16 16 C 1.50701 * 109.46973 * 269.99857 * 15 12 10 17 17 H 1.08006 * 119.99964 * 359.97438 * 16 15 12 18 18 C 1.37870 * 120.00144 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00230 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 120.00235 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46971 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47018 * 119.99874 * 20 18 16 23 23 H 1.48495 * 109.46985 * 240.00041 * 20 18 16 24 24 C 1.46846 * 111.19497 * 298.25425 * 8 7 6 25 25 H 1.09004 * 109.47006 * 59.99812 * 1 2 3 26 26 H 1.08996 * 109.47189 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47223 * 299.99786 * 1 2 3 28 28 H 1.09002 * 109.46826 * 240.00483 * 2 1 3 29 29 H 1.08995 * 109.46858 * 120.00378 * 2 1 3 30 30 H 1.08998 * 109.52403 * 57.68578 * 5 3 2 31 31 H 1.09002 * 109.51651 * 297.49957 * 5 3 2 32 32 H 1.09000 * 109.49659 * 182.40238 * 6 5 3 33 33 H 1.09002 * 109.53548 * 62.30743 * 6 5 3 34 34 H 1.08994 * 109.45937 * 299.16448 * 7 6 5 35 35 H 1.08994 * 109.45757 * 179.19844 * 7 6 5 36 36 H 1.09001 * 109.46881 * 306.03695 * 9 8 7 37 37 H 1.09002 * 109.46962 * 186.05016 * 9 8 7 38 38 H 1.09002 * 109.47129 * 329.99760 * 13 12 10 39 39 H 1.08998 * 109.46845 * 210.00566 * 13 12 10 40 40 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 41 41 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 42 42 H 1.09004 * 109.47261 * 179.97438 * 14 13 12 43 43 H 1.08992 * 109.46978 * 29.99627 * 15 12 10 44 44 H 1.08993 * 109.47313 * 150.00156 * 15 12 10 45 45 H 0.96999 * 120.00362 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.46295 * 181.75913 * 24 8 7 47 47 H 1.08997 * 109.46750 * 301.72992 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9817 -0.8424 5 6 1.6353 2.1278 1.3082 6 6 2.2007 3.5507 1.3259 7 6 3.7216 3.4921 1.1667 8 7 4.0572 2.8287 -0.0996 9 6 5.5036 2.8773 -0.3522 10 6 6.2227 2.0543 0.6854 11 8 5.5925 1.4838 1.5504 12 7 7.5663 1.9531 0.6526 13 6 8.3276 2.6436 -0.3913 14 6 8.7009 4.0461 0.0928 15 6 8.2653 1.1525 1.6610 16 6 8.6116 2.0228 2.8416 17 1 8.3387 3.0678 2.8407 18 6 9.2778 1.4853 3.9224 19 7 9.6106 0.2129 3.9233 20 14 9.7077 2.5642 5.3855 21 1 9.2270 3.9474 5.1388 22 1 9.0577 2.0242 6.6066 23 1 11.1806 2.5787 5.5740 24 6 3.5656 1.4451 -0.1207 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.0354 1.5663 2.1525 31 1 0.5482 2.1668 1.3778 32 1 1.9521 4.0291 2.2732 33 1 1.7706 4.1240 0.5047 34 1 4.1522 2.9310 1.9960 35 1 4.1257 4.5044 1.1646 36 1 5.8472 3.9103 -0.2987 37 1 5.7130 2.4757 -1.3437 38 1 7.7205 2.7201 -1.2933 39 1 9.2352 2.0814 -0.6110 40 1 9.3080 3.9695 0.9949 41 1 7.7932 4.6082 0.3125 42 1 9.2678 4.5597 -0.6837 43 1 7.6209 0.3365 1.9877 44 1 9.1794 0.7437 1.2306 45 1 10.0790 -0.1654 4.6838 46 1 3.8565 0.9705 -1.0579 47 1 3.9970 0.8935 0.7146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079964623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = -68.649937 kcal Electronic energy + Delta-G solvation = -23827.190032 eV Core-core repulsion = 20622.379032 eV Total energy + Delta-G solvation = -3204.811000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40140 -39.43270 -37.02233 -35.76071 -34.86731 -33.27772 -31.52853 -30.44859 -29.69331 -27.88546 -25.30684 -24.61760 -24.12914 -23.65146 -21.89229 -20.65162 -19.85770 -18.71467 -17.96420 -17.32952 -16.65784 -16.41262 -15.99656 -15.91743 -15.45059 -15.27463 -14.96212 -14.59256 -14.50098 -14.30605 -13.91866 -13.72763 -13.60156 -13.31292 -13.26502 -13.06636 -12.98214 -12.75829 -12.54715 -12.45291 -12.24883 -12.10415 -11.92589 -11.78349 -11.76373 -11.59164 -11.42372 -11.13763 -11.11106 -10.98362 -10.66028 -9.41912 -9.05879 -8.23777 -6.37115 1.32208 1.34348 1.45779 1.81125 2.30898 2.46692 2.93596 3.05758 3.74459 3.81803 3.89293 4.01858 4.17816 4.19515 4.29919 4.38295 4.44520 4.49864 4.55399 4.60512 4.64855 4.73719 4.76246 4.80396 4.93222 4.95498 4.98672 5.03170 5.05497 5.08131 5.14402 5.15771 5.21979 5.24255 5.25165 5.34332 5.49968 5.50667 5.58569 5.63840 5.87180 5.99536 6.06284 6.08393 6.70277 6.82548 7.28399 7.50812 8.83507 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018505 B = 0.004603 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.710440 B = 6081.250536 C = 6519.028603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C -0.072 4.072 4 H 0.086 0.914 5 C -0.114 4.114 6 C -0.106 4.106 7 C 0.040 3.960 8 N -0.503 5.503 9 C 0.043 3.957 10 C 0.464 3.536 11 O -0.585 6.585 12 N -0.603 5.603 13 C 0.103 3.897 14 C -0.162 4.162 15 C 0.261 3.739 16 C -0.529 4.529 17 H 0.053 0.947 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.037 3.963 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.052 0.948 42 H 0.092 0.908 43 H -0.008 1.008 44 H 0.018 0.982 45 H 0.265 0.735 46 H 0.069 0.931 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 7.200 -12.808 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.091 4.091 4 H 0.104 0.896 5 C -0.151 4.151 6 C -0.144 4.144 7 C -0.088 4.088 8 N -0.224 5.224 9 C -0.089 4.089 10 C 0.253 3.747 11 O -0.467 6.467 12 N -0.335 5.335 13 C -0.019 4.019 14 C -0.220 4.220 15 C 0.140 3.860 16 C -0.568 4.568 17 H 0.072 0.928 18 C -0.192 4.192 19 N -0.571 5.571 20 Si 0.787 3.213 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.090 4.090 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.010 0.990 44 H 0.036 0.964 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.540 7.039 -12.659 19.828 hybrid contribution 1.309 -0.572 2.035 2.486 sum -12.232 6.467 -10.625 17.445 Atomic orbital electron populations 1.21752 0.94165 1.01966 1.02350 1.21513 0.97196 0.95704 1.01280 1.21122 0.93328 0.96242 0.98397 0.89583 1.21646 1.01016 0.95681 0.96784 1.21518 0.93261 0.97251 1.02380 1.22241 0.97684 0.98278 0.90641 1.62554 1.10153 1.16787 1.32948 1.22488 0.87565 1.01087 0.97733 1.22701 0.82611 0.82208 0.87210 1.90566 1.66204 1.49537 1.40354 1.48476 1.06399 1.48895 1.29718 1.21747 0.96941 0.93383 0.89834 1.22145 1.01669 0.96231 1.01983 1.18686 0.90425 0.90326 0.86599 1.21694 1.36198 0.96187 1.02675 0.92832 1.25829 0.95778 0.96351 1.01276 1.70060 1.41268 1.13593 1.32177 0.85440 0.78245 0.78878 0.78705 1.19133 1.20952 1.19448 1.22442 0.96233 0.89229 1.01133 0.91653 0.92383 0.92489 0.91717 0.94050 0.94853 0.89885 0.91197 0.89876 0.96160 0.90814 0.86326 0.85552 0.87475 0.90818 0.94504 0.92930 0.88890 0.98954 0.96429 0.92570 0.91241 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.67 71.98 0.70 -1.81 16 2 C -0.12 -2.66 5.41 30.60 0.17 -2.49 16 3 C -0.07 -1.75 2.35 -10.74 -0.03 -1.78 16 4 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 5 C -0.11 -2.82 4.98 30.68 0.15 -2.67 16 6 C -0.11 -2.59 6.09 30.65 0.19 -2.41 16 7 C 0.04 1.22 5.09 86.33 0.44 1.66 16 8 N -0.50 -14.58 4.86 -900.95 -4.38 -18.96 16 9 C 0.04 1.22 4.41 85.55 0.38 1.59 16 10 C 0.46 19.00 7.09 87.65 0.62 19.62 16 11 O -0.58 -29.61 11.20 -3.03 -0.03 -29.64 16 12 N -0.60 -25.35 2.46 -826.19 -2.03 -27.38 16 13 C 0.10 3.07 5.97 86.38 0.52 3.59 16 14 C -0.16 -4.56 10.24 71.98 0.74 -3.82 16 15 C 0.26 14.24 5.20 85.63 0.45 14.69 16 16 C -0.53 -30.60 8.92 25.60 0.23 -30.37 16 17 H 0.05 3.08 7.42 -2.91 -0.02 3.06 16 18 C 0.01 0.36 5.46 84.65 0.46 0.82 16 19 N -0.93 -57.16 13.29 21.44 0.28 -56.87 16 20 Si 0.96 45.63 29.54 68.60 2.03 47.66 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C 0.04 1.14 4.26 86.33 0.37 1.50 16 25 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.97 6.62 -2.39 -0.02 0.95 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.66 6.70 -2.39 -0.02 1.64 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.02 0.82 6.00 -2.39 -0.01 0.80 16 35 H 0.07 2.08 8.06 -2.39 -0.02 2.06 16 36 H 0.12 2.91 7.11 -2.39 -0.02 2.89 16 37 H 0.13 2.84 7.40 -2.39 -0.02 2.82 16 38 H 0.11 2.26 6.44 -2.39 -0.02 2.24 16 39 H 0.07 2.20 7.89 -2.39 -0.02 2.18 16 40 H 0.04 1.31 7.26 -2.39 -0.02 1.30 16 41 H 0.05 1.42 7.22 -2.39 -0.02 1.40 16 42 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 43 H -0.01 -0.49 7.42 -2.39 -0.02 -0.50 16 44 H 0.02 0.99 7.89 -2.39 -0.02 0.97 16 45 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 46 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 47 H 0.04 1.55 5.36 -2.39 -0.01 1.53 16 Total: -1.00 -72.79 356.32 2.16 -70.64 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.92 Total: 16.43 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 5.37 Total: -1.87 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -6.12 Total: -103.21 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.03 Total: -29.64 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -72.79 2.16 -70.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079964623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.986 kcal (2) G-P(sol) polarization free energy of solvation -72.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds