Wall clock time and date at job start Tue Mar 31 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47266 * 2 1 4 4 H 1.09003 * 109.69756 * 59.73759 * 3 2 1 5 5 C 1.52760 * 109.50921 * 299.62517 * 3 2 1 6 6 C 1.53042 * 109.38257 * 185.70057 * 5 3 2 7 7 C 1.53042 * 109.53436 * 61.24015 * 6 5 3 8 8 C 1.53194 * 109.31566 * 298.63435 * 7 6 5 9 9 N 1.46918 * 109.58661 * 180.09584 * 3 2 1 10 10 C 1.34776 * 120.63144 * 353.41712 * 9 3 2 11 11 O 1.21276 * 120.00153 * 5.74315 * 10 9 3 12 12 C 1.50701 * 120.00091 * 185.72983 * 10 9 3 13 13 N 1.46902 * 109.47259 * 185.54422 * 12 10 9 14 14 C 1.46900 * 110.99969 * 190.79812 * 13 12 10 15 15 C 1.52997 * 109.47540 * 75.26729 * 14 13 12 16 16 C 1.46892 * 110.99728 * 66.84060 * 13 12 10 17 17 C 1.50701 * 109.47085 * 189.99889 * 16 13 12 18 18 H 1.08002 * 119.99732 * 0.02562 * 17 16 13 19 19 C 1.37874 * 120.00251 * 179.97438 * 17 16 13 20 20 N 1.31511 * 120.00310 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47083 * 90.00518 * 21 19 17 23 23 H 1.48508 * 109.47195 * 210.00172 * 21 19 17 24 24 H 1.48497 * 109.47234 * 330.00383 * 21 19 17 25 25 H 1.09001 * 109.47501 * 65.10149 * 1 2 3 26 26 H 1.08999 * 109.47156 * 185.10196 * 1 2 3 27 27 H 1.09001 * 109.47119 * 305.09955 * 1 2 3 28 28 H 1.09000 * 109.46497 * 240.00254 * 2 1 3 29 29 H 1.09000 * 109.46880 * 120.00591 * 2 1 3 30 30 H 1.09002 * 109.56155 * 65.67225 * 5 3 2 31 31 H 1.08999 * 109.38865 * 305.63105 * 5 3 2 32 32 H 1.09002 * 109.46034 * 301.22203 * 6 5 3 33 33 H 1.08993 * 109.44896 * 181.25052 * 6 5 3 34 34 H 1.08997 * 109.49657 * 178.67974 * 7 6 5 35 35 H 1.09005 * 109.49639 * 58.58860 * 7 6 5 36 36 H 1.09000 * 109.58714 * 294.85126 * 8 7 6 37 37 H 1.08999 * 109.70369 * 174.49203 * 8 7 6 38 38 H 1.09010 * 109.46815 * 65.54335 * 12 10 9 39 39 H 1.09001 * 109.47407 * 305.54896 * 12 10 9 40 40 H 1.09001 * 109.47000 * 195.27074 * 14 13 12 41 41 H 1.09007 * 109.46988 * 315.26352 * 14 13 12 42 42 H 1.08995 * 109.47198 * 174.93994 * 15 14 13 43 43 H 1.09001 * 109.47236 * 294.94129 * 15 14 13 44 44 H 1.09006 * 109.46925 * 54.94007 * 15 14 13 45 45 H 1.09000 * 109.47490 * 309.99785 * 16 13 12 46 46 H 1.09000 * 109.47159 * 70.00391 * 16 13 12 47 47 H 0.96996 * 120.00691 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6749 1.9613 0.8864 5 6 1.5391 2.1607 -1.2517 6 6 2.1650 3.5555 -1.3217 7 6 3.6875 3.4292 -1.4119 8 6 4.2129 2.7260 -0.1564 9 7 3.5092 1.4454 -0.0023 10 6 4.1984 0.2946 0.1289 11 8 3.6104 -0.7659 0.1457 12 6 5.6999 0.3257 0.2545 13 7 6.2201 -1.0482 0.2509 14 6 7.6402 -1.0743 0.6257 15 6 7.7737 -0.8570 2.1343 16 6 6.0082 -1.6878 -1.0544 17 6 6.3247 -3.1576 -0.9508 18 1 6.6502 -3.5748 -0.0093 19 6 6.1976 -3.9698 -2.0576 20 7 5.8007 -3.4619 -3.2040 21 14 6.5906 -5.7915 -1.9294 22 1 5.3636 -6.5371 -1.5498 23 1 7.0840 -6.2850 -3.2402 24 1 7.6364 -6.0008 -0.8961 25 1 -0.3634 0.4327 -0.9321 26 1 -0.3633 -1.0236 0.0914 27 1 -0.3633 0.5909 0.8408 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.4535 2.2508 -1.2109 31 1 1.8238 1.5894 -2.1351 32 1 1.8997 4.1180 -0.4265 33 1 1.7911 4.0773 -2.2026 34 1 4.1312 4.4221 -1.4853 35 1 3.9526 2.8457 -2.2936 36 1 4.0287 3.3515 0.7170 37 1 5.2831 2.5451 -0.2572 38 1 5.9764 0.8165 1.1877 39 1 6.1235 0.8768 -0.5851 40 1 8.0688 -2.0402 0.3584 41 1 8.1704 -0.2826 0.0962 42 1 8.8182 -0.9656 2.4260 43 1 7.4276 0.1447 2.3891 44 1 7.1702 -1.5953 2.6625 45 1 4.9688 -1.5604 -1.3570 46 1 6.6615 -1.2269 -1.7952 47 1 5.7117 -4.0332 -3.9827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081017951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:19 Heat of formation + Delta-G solvation = -26.468091 kcal Electronic energy + Delta-G solvation = -24016.622097 eV Core-core repulsion = 20813.640239 eV Total energy + Delta-G solvation = -3202.981858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28031 -37.54124 -36.10019 -34.06955 -32.69307 -32.47072 -30.16024 -29.33281 -28.12815 -25.63380 -24.42571 -23.89615 -22.32719 -21.23282 -20.94626 -19.87321 -18.53079 -16.50680 -16.34961 -15.78620 -15.28591 -14.74414 -14.54635 -14.46731 -14.22201 -13.97211 -13.53412 -13.34120 -13.18934 -12.99260 -12.76713 -12.40222 -12.16627 -11.91958 -11.86036 -11.58767 -11.55977 -11.15571 -11.05147 -10.98067 -10.90752 -10.70547 -10.62158 -10.41995 -10.39677 -10.33987 -10.06429 -9.72485 -9.11875 -8.44679 -8.32793 -8.15804 -7.16450 -5.90511 -3.89426 3.18165 3.27065 3.40094 3.45503 3.48793 4.51852 4.63938 4.75231 4.81177 4.94858 5.05475 5.18753 5.27651 5.34049 5.43688 5.45500 5.51801 5.58393 5.62460 5.70014 5.74519 5.79588 5.83778 5.85816 5.88579 5.93908 6.01036 6.01939 6.06892 6.12991 6.29195 6.32025 6.33276 6.63990 6.70095 6.73731 6.82047 7.06208 7.39908 7.43090 7.74656 7.92260 8.25274 8.29964 8.63042 8.86012 9.16624 9.72616 11.20961 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.005274 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.764265 B = 5307.648421 C = 6094.769418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C 0.153 3.847 4 H 0.062 0.938 5 C -0.134 4.134 6 C -0.117 4.117 7 C -0.137 4.137 8 C 0.110 3.890 9 N -0.622 5.622 10 C 0.513 3.487 11 O -0.488 6.488 12 C 0.038 3.962 13 N -0.519 5.519 14 C 0.056 3.944 15 C -0.144 4.144 16 C 0.191 3.809 17 C -0.497 4.497 18 H 0.062 0.938 19 C 0.054 3.946 20 N -0.900 5.900 21 Si 0.896 3.104 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.274 1.274 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.017 0.983 42 H 0.048 0.952 43 H 0.040 0.960 44 H 0.061 0.939 45 H 0.046 0.954 46 H -0.018 1.018 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 16.293 6.211 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.151 4.151 3 C 0.050 3.950 4 H 0.080 0.920 5 C -0.173 4.173 6 C -0.155 4.155 7 C -0.175 4.175 8 C -0.013 4.013 9 N -0.360 5.360 10 C 0.301 3.699 11 O -0.360 6.360 12 C -0.094 4.094 13 N -0.244 5.244 14 C -0.072 4.072 15 C -0.201 4.201 16 C 0.067 3.933 17 C -0.535 4.535 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.541 5.541 21 Si 0.724 3.276 22 H -0.207 1.207 23 H -0.215 1.215 24 H -0.199 1.199 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.108 0.892 41 H 0.036 0.964 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.000 1.000 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.716 15.342 6.390 17.575 hybrid contribution 0.621 -0.279 -0.778 1.034 sum -5.095 15.063 5.612 16.863 Atomic orbital electron populations 1.21987 0.97440 1.01474 1.00698 1.22089 0.93158 0.94102 1.05762 1.21136 0.79341 0.97708 0.96820 0.91981 1.21991 1.00250 0.95998 0.99039 1.21497 0.95258 0.97052 1.01697 1.21930 0.96275 1.00619 0.98722 1.21655 0.97207 0.85005 0.97473 1.48220 1.06011 1.06820 1.74951 1.20708 0.89963 0.83114 0.76136 1.90792 1.69050 1.29728 1.46382 1.21994 0.92209 0.94173 1.01019 1.61930 1.15368 1.12036 1.35054 1.22006 0.89081 1.01788 0.94344 1.21801 1.00265 1.00876 0.97201 1.19833 0.97524 0.93908 0.82057 1.21108 1.43867 0.92794 0.95774 0.92006 1.24953 0.95707 0.98639 0.95346 1.69961 1.47995 1.35513 1.00588 0.86532 0.78560 0.85450 0.77038 1.20696 1.21481 1.19929 0.93233 0.92678 0.93544 0.90192 0.89560 0.90938 0.91324 0.92069 0.91959 0.91016 0.91260 0.91874 0.89775 0.89488 0.93661 0.89239 0.96441 0.93315 0.94077 0.92004 0.93553 0.99991 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.42 37.16 0.35 -1.66 16 2 C -0.11 -1.82 3.86 -26.73 -0.10 -1.92 16 3 C 0.15 2.07 3.00 -67.83 -0.20 1.87 16 4 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.13 -1.56 4.83 -26.83 -0.13 -1.69 16 6 C -0.12 -1.12 5.89 -26.69 -0.16 -1.27 16 7 C -0.14 -1.36 6.08 -26.61 -0.16 -1.53 16 8 C 0.11 1.21 6.33 -3.71 -0.02 1.19 16 9 N -0.62 -9.19 2.98 -165.48 -0.49 -9.68 16 10 C 0.51 9.73 7.10 -10.99 -0.08 9.65 16 11 O -0.49 -11.27 10.16 5.56 0.06 -11.21 16 12 C 0.04 0.68 3.88 -4.97 -0.02 0.67 16 13 N -0.52 -11.60 4.12 -237.51 -0.98 -12.58 16 14 C 0.06 1.09 5.53 -3.83 -0.02 1.07 16 15 C -0.14 -2.26 9.94 37.16 0.37 -1.89 16 16 C 0.19 5.23 4.36 -4.98 -0.02 5.21 16 17 C -0.50 -14.60 8.24 -34.44 -0.28 -14.89 16 18 H 0.06 1.80 7.30 -52.49 -0.38 1.42 16 19 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.86 13.29 55.43 0.74 -27.12 16 21 Si 0.90 22.57 29.54 -169.99 -5.02 17.55 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 25 H 0.05 0.57 6.86 -51.93 -0.36 0.22 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.57 7.02 -51.93 -0.36 1.20 16 29 H 0.09 1.59 6.47 -51.93 -0.34 1.26 16 30 H 0.07 0.73 6.88 -51.93 -0.36 0.38 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.90 5.82 -51.93 -0.30 0.60 16 38 H 0.09 1.33 6.67 -51.92 -0.35 0.99 16 39 H 0.05 0.79 7.11 -51.93 -0.37 0.42 16 40 H 0.09 1.94 6.58 -51.93 -0.34 1.60 16 41 H 0.02 0.32 8.01 -51.92 -0.42 -0.10 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.04 0.57 6.92 -51.93 -0.36 0.21 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.05 1.40 6.05 -51.93 -0.31 1.09 16 46 H -0.02 -0.51 8.12 -51.93 -0.42 -0.93 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -33.17 352.99 -9.41 -42.58 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -8.45 Total: -1.16 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -0.58 Total: -3.69 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.73 Total: -49.39 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.06 Total: -11.21 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.17 -9.41 -42.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081017951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.116 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds