Wall clock time and date at job start Tue Mar 31 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47266 * 2 1 4 4 H 1.09003 * 109.69756 * 59.73759 * 3 2 1 5 5 C 1.52760 * 109.50921 * 299.62517 * 3 2 1 6 6 C 1.53042 * 109.38257 * 185.70057 * 5 3 2 7 7 C 1.53042 * 109.53436 * 61.24015 * 6 5 3 8 8 C 1.53194 * 109.31566 * 298.63435 * 7 6 5 9 9 N 1.46918 * 109.58661 * 180.09584 * 3 2 1 10 10 C 1.34776 * 120.63144 * 353.41712 * 9 3 2 11 11 O 1.21276 * 120.00153 * 5.74315 * 10 9 3 12 12 C 1.50701 * 120.00091 * 185.72983 * 10 9 3 13 13 N 1.46902 * 109.47259 * 185.54422 * 12 10 9 14 14 C 1.46900 * 110.99969 * 190.79812 * 13 12 10 15 15 C 1.52997 * 109.47540 * 75.26729 * 14 13 12 16 16 C 1.46892 * 110.99728 * 66.84060 * 13 12 10 17 17 C 1.50701 * 109.47085 * 189.99889 * 16 13 12 18 18 H 1.08002 * 119.99732 * 0.02562 * 17 16 13 19 19 C 1.37874 * 120.00251 * 179.97438 * 17 16 13 20 20 N 1.31511 * 120.00310 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47083 * 90.00518 * 21 19 17 23 23 H 1.48508 * 109.47195 * 210.00172 * 21 19 17 24 24 H 1.48497 * 109.47234 * 330.00383 * 21 19 17 25 25 H 1.09001 * 109.47501 * 65.10149 * 1 2 3 26 26 H 1.08999 * 109.47156 * 185.10196 * 1 2 3 27 27 H 1.09001 * 109.47119 * 305.09955 * 1 2 3 28 28 H 1.09000 * 109.46497 * 240.00254 * 2 1 3 29 29 H 1.09000 * 109.46880 * 120.00591 * 2 1 3 30 30 H 1.09002 * 109.56155 * 65.67225 * 5 3 2 31 31 H 1.08999 * 109.38865 * 305.63105 * 5 3 2 32 32 H 1.09002 * 109.46034 * 301.22203 * 6 5 3 33 33 H 1.08993 * 109.44896 * 181.25052 * 6 5 3 34 34 H 1.08997 * 109.49657 * 178.67974 * 7 6 5 35 35 H 1.09005 * 109.49639 * 58.58860 * 7 6 5 36 36 H 1.09000 * 109.58714 * 294.85126 * 8 7 6 37 37 H 1.08999 * 109.70369 * 174.49203 * 8 7 6 38 38 H 1.09010 * 109.46815 * 65.54335 * 12 10 9 39 39 H 1.09001 * 109.47407 * 305.54896 * 12 10 9 40 40 H 1.09001 * 109.47000 * 195.27074 * 14 13 12 41 41 H 1.09007 * 109.46988 * 315.26352 * 14 13 12 42 42 H 1.08995 * 109.47198 * 174.93994 * 15 14 13 43 43 H 1.09001 * 109.47236 * 294.94129 * 15 14 13 44 44 H 1.09006 * 109.46925 * 54.94007 * 15 14 13 45 45 H 1.09000 * 109.47490 * 309.99785 * 16 13 12 46 46 H 1.09000 * 109.47159 * 70.00391 * 16 13 12 47 47 H 0.96996 * 120.00691 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6749 1.9613 0.8864 5 6 1.5391 2.1607 -1.2517 6 6 2.1650 3.5555 -1.3217 7 6 3.6875 3.4292 -1.4119 8 6 4.2129 2.7260 -0.1564 9 7 3.5092 1.4454 -0.0023 10 6 4.1984 0.2946 0.1289 11 8 3.6104 -0.7659 0.1457 12 6 5.6999 0.3257 0.2545 13 7 6.2201 -1.0482 0.2509 14 6 7.6402 -1.0743 0.6257 15 6 7.7737 -0.8570 2.1343 16 6 6.0082 -1.6878 -1.0544 17 6 6.3247 -3.1576 -0.9508 18 1 6.6502 -3.5748 -0.0093 19 6 6.1976 -3.9698 -2.0576 20 7 5.8007 -3.4619 -3.2040 21 14 6.5906 -5.7915 -1.9294 22 1 5.3636 -6.5371 -1.5498 23 1 7.0840 -6.2850 -3.2402 24 1 7.6364 -6.0008 -0.8961 25 1 -0.3634 0.4327 -0.9321 26 1 -0.3633 -1.0236 0.0914 27 1 -0.3633 0.5909 0.8408 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.4535 2.2508 -1.2109 31 1 1.8238 1.5894 -2.1351 32 1 1.8997 4.1180 -0.4265 33 1 1.7911 4.0773 -2.2026 34 1 4.1312 4.4221 -1.4853 35 1 3.9526 2.8457 -2.2936 36 1 4.0287 3.3515 0.7170 37 1 5.2831 2.5451 -0.2572 38 1 5.9764 0.8165 1.1877 39 1 6.1235 0.8768 -0.5851 40 1 8.0688 -2.0402 0.3584 41 1 8.1704 -0.2826 0.0962 42 1 8.8182 -0.9656 2.4260 43 1 7.4276 0.1447 2.3891 44 1 7.1702 -1.5953 2.6625 45 1 4.9688 -1.5604 -1.3570 46 1 6.6615 -1.2269 -1.7952 47 1 5.7117 -4.0332 -3.9827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081017951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:18 Heat of formation + Delta-G solvation = -48.395787 kcal Electronic energy + Delta-G solvation = -24017.572953 eV Core-core repulsion = 20813.640239 eV Total energy + Delta-G solvation = -3203.932714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56468 -38.93983 -37.64783 -35.25325 -34.71045 -33.74898 -31.68464 -30.38259 -29.93024 -27.31374 -25.63820 -24.99681 -24.25286 -22.56919 -21.96368 -21.32064 -19.84589 -18.58534 -17.77534 -17.10204 -16.85736 -16.39953 -15.83062 -15.67814 -15.59469 -15.37768 -14.98662 -14.54829 -14.38184 -14.21875 -14.15333 -13.97300 -13.76487 -13.45474 -13.15617 -12.97690 -12.83749 -12.61942 -12.57907 -12.55177 -12.35311 -12.03820 -11.90424 -11.81190 -11.73919 -11.56477 -11.47655 -11.37543 -11.24721 -10.60322 -9.89481 -9.42062 -8.94522 -8.19460 -6.27628 1.36289 1.40237 1.50240 1.78196 2.04595 2.39750 3.13029 3.30910 3.61240 3.86578 3.88060 4.03267 4.11574 4.19304 4.25373 4.29633 4.34381 4.42302 4.43260 4.53542 4.56144 4.65528 4.72099 4.76499 4.84690 4.90310 4.96607 4.99538 5.08431 5.09143 5.14146 5.19787 5.20684 5.27208 5.35079 5.39000 5.47376 5.47985 5.52667 5.64651 5.85277 6.07969 6.38787 6.45020 6.69120 6.87274 7.39897 7.45173 8.92297 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.005274 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.764265 B = 5307.648421 C = 6094.769418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C 0.150 3.850 4 H 0.091 0.909 5 C -0.130 4.130 6 C -0.113 4.113 7 C -0.136 4.136 8 C 0.101 3.899 9 N -0.617 5.617 10 C 0.502 3.498 11 O -0.544 6.544 12 C 0.040 3.960 13 N -0.534 5.534 14 C 0.054 3.946 15 C -0.131 4.131 16 C 0.214 3.786 17 C -0.515 4.515 18 H 0.059 0.941 19 C -0.003 4.003 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.279 1.279 23 H -0.278 1.278 24 H -0.260 1.260 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.028 0.972 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.040 0.960 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.125 0.875 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.007 0.993 46 H -0.046 1.046 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.004 18.672 7.851 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C 0.048 3.952 4 H 0.109 0.891 5 C -0.169 4.169 6 C -0.150 4.150 7 C -0.174 4.174 8 C -0.021 4.021 9 N -0.353 5.353 10 C 0.290 3.710 11 O -0.420 6.420 12 C -0.091 4.091 13 N -0.259 5.259 14 C -0.074 4.074 15 C -0.189 4.189 16 C 0.088 3.912 17 C -0.553 4.553 18 H 0.077 0.923 19 C -0.200 4.200 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.205 1.205 23 H -0.204 1.204 24 H -0.184 1.184 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.059 0.941 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.143 0.857 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.025 0.975 46 H -0.029 1.029 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.588 17.790 8.046 20.308 hybrid contribution 0.570 -0.930 -1.289 1.688 sum -5.018 16.860 6.757 18.844 Atomic orbital electron populations 1.21905 0.94664 1.01640 1.02512 1.21814 0.95481 0.95358 1.01752 1.21290 0.78662 0.96222 0.99059 0.89147 1.21962 1.01659 0.96864 0.96376 1.21506 0.94467 0.95513 1.03518 1.21945 0.97049 1.01553 0.96837 1.22022 0.97114 0.83452 0.99478 1.48301 1.06786 1.07090 1.73092 1.20972 0.90460 0.83585 0.75937 1.90793 1.70015 1.32011 1.49218 1.22094 0.91837 0.92050 1.03161 1.61786 1.17509 1.14818 1.31811 1.22064 0.87254 1.00719 0.97360 1.21699 1.01912 1.01732 0.93512 1.19325 0.94267 0.93613 0.83969 1.21432 1.43939 0.94149 0.95801 0.92302 1.25929 0.95303 1.03919 0.94842 1.70103 1.48870 1.37468 1.01410 0.85392 0.78603 0.78928 0.77734 1.20474 1.20365 1.18414 0.91876 0.93637 0.90884 0.95302 0.92737 0.88889 0.94589 0.89638 0.90629 0.87870 0.94084 0.88500 0.89553 0.85738 0.92762 0.92279 0.95010 0.90580 0.91679 0.93555 0.97457 1.02875 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.42 71.98 0.68 -3.11 16 2 C -0.11 -3.61 3.86 30.59 0.12 -3.49 16 3 C 0.15 3.97 3.00 44.83 0.13 4.10 16 4 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 5 C -0.13 -2.86 4.83 30.53 0.15 -2.71 16 6 C -0.11 -1.78 5.89 30.62 0.18 -1.60 16 7 C -0.14 -2.36 6.08 30.67 0.19 -2.18 16 8 C 0.10 1.97 6.33 86.36 0.55 2.52 16 9 N -0.62 -18.01 2.98 -795.84 -2.37 -20.38 16 10 C 0.50 19.79 7.10 87.66 0.62 20.41 16 11 O -0.54 -27.16 10.16 -3.02 -0.03 -27.19 16 12 C 0.04 1.44 3.88 85.56 0.33 1.77 16 13 N -0.53 -24.67 4.12 -905.36 -3.73 -28.40 16 14 C 0.05 2.09 5.53 86.30 0.48 2.57 16 15 C -0.13 -3.86 9.94 71.98 0.72 -3.14 16 16 C 0.21 12.46 4.36 85.56 0.37 12.83 16 17 C -0.51 -31.67 8.24 25.60 0.21 -31.46 16 18 H 0.06 3.56 7.30 -2.91 -0.02 3.54 16 19 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 20 N -0.94 -60.49 13.29 21.45 0.28 -60.21 16 21 Si 0.97 47.50 29.54 68.60 2.03 49.52 16 22 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 25 H 0.06 1.42 6.86 -2.39 -0.02 1.40 16 26 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.03 1.24 7.02 -2.39 -0.02 1.23 16 29 H 0.05 2.17 6.47 -2.39 -0.02 2.16 16 30 H 0.09 1.65 6.88 -2.39 -0.02 1.64 16 31 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.64 5.82 -2.39 -0.01 1.63 16 38 H 0.12 3.53 6.67 -2.38 -0.02 3.51 16 39 H 0.05 1.89 7.11 -2.39 -0.02 1.87 16 40 H 0.06 2.64 6.58 -2.39 -0.02 2.62 16 41 H 0.03 1.13 8.01 -2.38 -0.02 1.11 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 1.60 6.92 -2.39 -0.02 1.58 16 44 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.01 0.48 6.05 -2.39 -0.01 0.47 16 46 H -0.05 -2.86 8.12 -2.39 -0.02 -2.88 16 47 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -79.41 352.99 2.29 -77.12 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.92 Total: 12.73 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.18 Total: -3.20 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -5.81 Total: -108.98 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.03 Total: -27.19 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.52 kcal Total: -79.41 2.29 -77.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081017951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.726 kcal (2) G-P(sol) polarization free energy of solvation -79.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds